BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311617
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05291.1 | Symbols: | Protein of unknown function (DUF1218)... 702 0.0
> AT1G05291.1 | Symbols: | Protein of unknown function (DUF1218)
| chr1:1541348-1542432 REVERSE LENGTH=724
Length=724
Score = 702 bits (380), Expect = 0.0
Identities = 495/548 (90%), Gaps = 18/548 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGAGGGGAACA-AAACGGAGAAGAAAGGATGCTTAATCAGCGTCATCATTGTTTG 59
|||||||||||||| | ||||||||||||||||||| |||| | |||||||||||||||
Sbjct 110 ATGGAAGAGGGGAA-AGGAACGGAGAAGAAAGGATGCATAATTACCGTCATCATTGTTTG 168
Query 60 CATTGTTTTGACTGTAGGCTTTGATATCGTCGCTGGTTTCGTCGGATTACAAGCCGAAGC 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 169 CATTGTTTTGACTGTAGGCTTAGATATCGTCGCTGGTTTCGTCGGATTACAAGCCCAAGC 228
Query 120 CGCCCAACAAGATGTGAAGCACAATAAGCTCGAGTGTCAAGCTCCAAGCAAAACAGCTTT 179
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 229 CGCCCAACAATATGTGAAGCACGATAAGCTCGAGTGTAAAGCTCCAAGCAAAACAGCTTT 288
Query 180 CGTGTTAGGGATAATCGCAGTGTCATGTTTGGCAGCAGCTCATCTCAGTGCCAATGTGAT 239
||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 289 CGTGTTAGGGATAATTGCAGTGTCATGTTTGGCAACAGCTCATGTCAGTGCCAATGTGAT 348
Query 240 CGGATGCTCTATCTCCAATCTATTCCAAGCACTCGGCGCCTTACCTAAGAATAAGATCAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CGGATGCTCTATCTCCAATCTATTCCAAGCACTCGGCGCCTTACCTAAGAATAAGATCAC 408
Query 300 TACATACTTCAACATGACATGCCTTTG-CATCAATTGGATCGTAGGAATAGCGGGAGCAT 358
|||||||||||||||| ||||||||| | ||| |||| |||||||||| |||||||
Sbjct 409 TACATACTTCAACATGGCATGCCTTTTTC-TCATTTGGGTCGTAGGAATCTTTGGAGCAT 467
Query 359 TGATCCTTGCGG-TGGGGATATGGTCGAACAGAGAATCAAGA-TCAGAATGT-GTATTCA 415
||||||||||| |||| ||||||||||||| ||| |||||| | ||| ||| | |||||
Sbjct 468 TGATCCTTGCGAATGGG-ATATGGTCGAACACAGAGTCAAGAATAAGA-TGTAG-ATTCA 524
Query 416 CAAACAAAGTCCATGTGTTTTCTATCGGGGGTAAAGTGTGTTTCCTTCATGCCATTGTCT 475
||||||| ||||||||| ||||| || || |||||||||||||||||||||||||| |
Sbjct 525 CAAACAA---CCATGTGTTCTCTATTGGAGGCAAAGTGTGTTTCCTTCATGCCATTGTTT 581
Query 476 CTGTCATATATTACGTATCGTCTATAGTAGCTAGGTG-T-GGTCATTTTaaccgaaccga 533
||| |||||||||| |||||||||| ||||| ||| | | || |||||| |||||||| |
Sbjct 582 CTGGCATATATTACATATCGTCTATTGTAGCAAGG-GCTCGG-CATTTTCACCGAACCAA 639
Query 534 accgaaac 541
||| ||||
Sbjct 640 ACC-AAAC 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5