BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311624
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1515 0.0
> AT3G03360.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:794906-797013 FORWARD LENGTH=1732
Length=1732
Score = 1515 bits (820), Expect = 0.0
Identities = 1201/1374 (87%), Gaps = 70/1374 (5%)
Strand=Plus/Plus
Query 48 CAAAGAAGCTGGAGACTTGATCAGTAGTTTGCATGATGATATTCTCCAACTTATTCTCTC 107
||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||
Sbjct 287 CAAAGAAGCTGGAGACTTGATCAGTAGGTTGCCTGATGATATTCTCCAACTAATTCTCTC 346
Query 108 CTATCTTCCAACCAGATTCGCCATCAGAACGTCCGCCTTGTCCCGGCGATGGAGGCATCT 167
|||||||||||||||||| || |||| ||| |||| || ||| |||||||||||||| |
Sbjct 347 CTATCTTCCAACCAGATTGGCGATCAAAACTTCCGTTTTATCCAGGCGATGGAGGCATGT 406
Query 168 ATGGTCTGATACATGGTCCCTCACCTTTTATGGGGATAGACCAGATGCTGCTTCTATTAA 227
|||||||||||||||||||||| |||| || |||| ||||| |||||| ||| ||||||
Sbjct 407 ATGGTCTGATACATGGTCCCTCTCCTTCCATAGGGACAGACCGGATGCTCCTTGTATTAA 466
Query 228 CGGAATCCTAGATCGCTACAGGGCTCCCAAGATGATGAGTTTCCGTATCTGTTCCCGTTC 287
| |||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 467 CAGAATCCTAGATCGCTACAGGGCTCCCAAGATGATGAGTTTTCGTATC---T---GTT- 519
Query 288 CCTCTGTTCCCGTTCCCTCCGTTCCCGTGCCAACCGATCCGACAAGCTTGCTGACATCGA 347
|| |||| | | | | || || || | || |||||| || ||||||||||||
Sbjct 520 -CT-TGTTGCAG----GGCAG--CCTGTATCAGCAGACCCGACACGCATGCTGACATCGA 571
Query 348 CAGTTGGATCAACTTCGCCGTGTCCCGAAACGTGGAGAATCTGTCCCTGTATCTCGATAA 407
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 572 CAGTTGGATCAACTTCGCCATGTCCCGAAACGTGGAGAATCTGTCCCTGTATCTCGATGA 631
Query 408 GGATGAATATGATATCCCTGACTTCCTTTACGTCAATTCCTCTCTCAAACAACTCTACCT 467
|||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 632 GGATAAATATGATATCCCTGAATTCCTTTACATCAATTCCTCTCTCAAGCAACTCTACCT 691
Query 468 TCA-AT----T-----AAGGTATTTCACTAATGATATGAATCCCAAATGCTCTGTGTCTT 517
| | | | |||| |||| | | || | ||||||||||||| ||||||||||
Sbjct 692 TGATTTCGGCTGCAAAAAGG-ATTTTA-T-AT-CTCTGAATCCCAAATGTTCTGTGTCTT 747
Query 518 GGATATCCCTTAAGACCCTGTCATTGTATGATTGCAACATCTCTGATGAATCTATTGCTA 577
||| |||||| |||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 748 GGACATCCCTGAAGAACCTGTCATTGTATCATTGCAACATCTCTGATGAATCCATTGCTA 807
Query 578 ATATTCTATCTGGTTGTCCCGTTCTCGAGAGCTTATCT-TTGCTTTTCTGCAATAAACTG 636
||||||||||||||||||| ||||||| ||||||| | ||| |||||||||| ||||||
Sbjct 808 TTATTCTATCTGGTTGTCCCATTCTCGAAAGCTTAT-TGTTGTTTTTCTGCAAGAAACTG 866
Query 637 AGGGTTCTTGATCTCAGCAAATCACCGCATCT-ACTAACATTAGAAATCAAGCGTTA-TT 694
| ||| |||||||||||||||||||||| ||| | ||||||||||||||| || || |
Sbjct 867 AAGGTCCTTGATCTCAGCAAATCACCGCGTCTGA-TAACATTAGAAATCACTCG-TAGAT 924
Query 695 GT-GTTACGGAGCCAACACAGCTCGTTGCACCACATATCCGTTGTCTCAGATTGAGGAAC 753
|| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 925 GTCG-AATGGAGCCAACACAGCTCGTTGCACCACATATCCGTTGTCTCAGATTGATAAAC 983
Query 754 TCTGAGAAACCATGTGCTTTAGTTGATGTCTCCTCTTTATCCCAAGCTGAACTAGACATT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TCTGAGAAACCATGTGCTTTAGTTGATGTCTCCTCTTTATCCCAAGCTGAACTAGACATT 1043
Query 814 GCCGTTTTCAAAATAGTTGATAATAAACTGGACGTTGATTTTCATCAGACCATGGTGGTA 873
||| || | ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1044 ACCGCTTACGCAATAGTTGATAATAAACTGGAGGCTGATTTTCATCAGACCATGGTGGTA 1103
Query 874 AAGATGCTAGAAAAGTGTCAGAATGTGGAGAAGCTTACTTTGGGGGCAAACATTCTTAAG 933
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1104 AAGATGTTAGAAAAGTGTCAGAATGTGGAGAAGCTTACTTTGGGGGCAAACTTTCTTAAG 1163
Query 934 ATTTTATCTCTTGCCGAGCTCCGTGTTGTTTCTTTTCCAAAGTTGAAG-CTTAAAGCTTT 992
|| |||||||||||||||||||||| |||||||||||||||||||||| || |||||| |
Sbjct 1164 ATGTTATCTCTTGCCGAGCTCCGTGGTGTTTCTTTTCCAAAGTTGAAGGCT-AAAGCTCT 1222
Query 993 GACACTTGACACAATGATCTCTCGATATGTTATTGCC-GGTATAGTAAGGGTGCTACAAA 1051
|| |||||| |||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1223 GATACTTGAGACAATGATCTCTCGATATGTTATT-CATGGTATAGTAAAGGTGCTACAAA 1281
Query 1052 ACTCGCCTGACTTGAAGAAGCTAACCATACAACCAATGGG--CA-C------ATATCCCA 1102
||||||||||||||||||||||||||||||| |||||||| | | ||||||||
Sbjct 1282 ACTCGCCTGACTTGAAGAAGCTAACCATACACCCAATGGGGTCTGCCGGCTCATATCCCA 1341
Query 1103 TACCGGAAAAGCATATTGACATATACTTGGATTCTCATGGCTTGAATTGGGATCAATCCT 1162
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1342 TACCGGAAGAGCATATTGACATATACTTGGATTCTCATGGCTTGAATTGGGATCCATCCT 1401
Query 1163 GGAGCTCGGAGTTT--GA----T----GTAG-A--GT----T-AAAGCAAGTGGCTTCGT 1204
|||||||||||||| || | | || | || | |||||||||||||||||
Sbjct 1402 GGAGCTCGGAGTTTAAGAACACTTCCCGCAGGAATGTAGAGTCAAAGCAAGTGGCTTCGT 1461
Query 1205 TTATGCAACTTGTGCTTAAAACCACAA-AGACATTAGAGTTGATTGTAGCAAGGGTGAAA 1263
|| ||||||||||||||||||||| | | ||||||||||||||||| |||||| || ||
Sbjct 1462 TTCTGCAACTTGTGCTTAAAACCATATCA-ACATTAGAGTTGATTGTCGCAAGGTTGGAA 1520
Query 1264 GATTATATCAAAGGAAGATGTTTTGTAGAGTTGCGTCGGATGGTACCAATGCTTACTCGC 1323
| |||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||
Sbjct 1521 GGTTATATCAAAGGAAGACGTTTTGTAGAGTTGCGTCAGATGGTTCCAATGCTTCCTCGC 1580
Query 1324 AACAACAATGTCTCCATTGTGCTCAGCTCAAGaaaaaaaCGATGCAGAGCGACT 1377
|||||| ||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 1581 AACAACGATGTCTCCATTGTGCTCAGCTCAAGAAGAAAACGATTCAGAGTGACT 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5