BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311660
Length=2880
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05790.1 | Symbols: | lipase class 3 family protein | chr1:... 1572 0.0
AT1G05785.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 296 7e-79
> AT1G05790.1 | Symbols: | lipase class 3 family protein | chr1:1733039-1737485
FORWARD LENGTH=2184
Length=2184
Score = 1572 bits (851), Expect = 0.0
Identities = 936/975 (96%), Gaps = 13/975 (1%)
Strand=Plus/Plus
Query 1821 TCATGTACATGGTATGGATACATCTCGCAAACACTATGGGCATTCAGGAATAGTAGAAGC 1880
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1092 TCATGTACATGGTATGGATACATCTCGCAAACACTATGGACATTCAGGAATAGTGGAAGC 1151
Query 1881 TGCAAGAGATCTATTTATGCAAATAGAAGGAGACCCCAAATTTGGAGAGTCAGGATCAAT 1940
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1152 TGCAAGAGATCTATTTATGCAAATAGAAGGAGACCCCAAATCTGGAGAGTCAGAATCAAG 1211
Query 1941 TGGGTTCTTGTCCTCATTGATTGGTGATGGGTGTGAGTGTGATGGCTACAGCATTCGCAT 2000
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1212 TGGGTTCTTGTCCTCATTGATTGGTGATGGTTGTGAGTGTGATGGCTACAGCATTCGCAT 1271
Query 2001 TGTTGGGCATTCTTTAGGAGGTGCTATCGCCTCATTACTGGGAATTAGACTTCGTCGCAG 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1272 TGTTGGGCATTCTTTAGGAGGTGCTATCGCCTCATTACTGGGAATTAGACTTCGTTGCAG 1331
Query 2061 ATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCAAGTGTAGATTCAGATGTGGC 2120
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1332 ATTCCCTAACCTATATGTATATGCCTATGGACCTCTCCCATGTGTAGATTCGGATGTGGC 1391
Query 2121 AGATGCATGTTCAGAATTTGTTACAAGCATTGTACTCGATAACGAATTCTCATCACGACT 2180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AGAGGCATGTTCAGAATTTGTTACAAGCATTGTACTCGATAACGAATTCTCATCACGACT 1451
Query 2181 TTCATATGGATCAATCCGCCGGCTCCAAGTAGCAGCAATCAAAGTACTGTCTCAAGACCC 2240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TTCATATGGATCAATCCGCCGGCTCCAAGTAGCAGCAATCAAAGTACTGTCTCAAGACCC 1511
Query 2241 AAAAGCTGATACAGCACTTATTTTCAGACTCGCACGCCGGTTTTTGTCTGCGAGCAAACG 2300
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1512 AAAAGCTGATACAGCACTCATTTTCAGACTCGCACGCCGGTTCTTGTCTGCAAGCAAACG 1571
Query 2301 CCAACGAGAAAATGTTGAAGAAAGAACTTCAGAAGAAGCAATGCCATCAATAATTGTTAA 2360
||||||||||||||||||||||| |||||||||||||||||| | | | |||||
Sbjct 1572 CCAACGAGAAAATGTTGAAGAAAAAACTTCAGAAGAAGCAAT---AG-A-T----GTTAA 1622
Query 2361 CAATTCACCGGAAAGCCAACAAGATCAAATATACCCAATATGGGAAGAAGCTGAAGCAGA 2420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1623 CAATTCACCGGAAAGCCAACACGATCAAATATACCCAATATGGGAAGAAGCTGAAGCAGA 1682
Query 2421 AATGCAGCAAGAT-GACGAAGAATTCATAAACCCGTTTCACGGTATGGCCTCAGAGGATA 2479
||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1683 AATGCAGCAAGATAG-CGAAGAGTTCATAAACCCATTTCACGGTATGGCCTCAGAGGATA 1741
Query 2480 ATCCCGTGTCTCAGTTTATGGAAACAAGCCCAACAAGAGAAGACGATGATGAAGCTCCCG 2539
|||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |
Sbjct 1742 ATCCCGTGTCTCAGTTTATGGAAACAGGACCAACAAAAGAAGACGATGATGAAGCTCCAG 1801
Query 2540 AGATGTTCATGCCAGGTTTAGTCATTCATATTGTACCAGAAGGAAACAACATGAGTGTGC 2599
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1802 AGATGTTCATGCCCGGTTTAGTCATTCATATTGTACCCGAAGGAAACAACATGAGTGTGC 1861
Query 2600 CGATATGGCGAGGATGGCCAATCTGTGATGTGACTGATGGTTACAAAGCTTATGTTGCAA 2659
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1862 CGATATGGCGAGGATGGCCAATCTGTGATGTGACGGATGGTTACAAAGCTTATGTTGCAA 1921
Query 2660 ACAGAGAGAGCTTCAAAGAAATTGTGGTTTCTCCATCAATGTTCCTTGATCATCTTCCTT 2719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1922 ACAGAGAGAGCTTCAAAGAAATTATGGTTTCTCCATCAATGTTCCTTGATCATCTTCCTT 1981
Query 2720 GGAGATGTAGACACGCGCTGCAGAAGGTTCTAGAATCTCGGAATCTCTTCTTCGATCTGA 2779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982 GGAGATGTAGACACGCGCTGCAGAAGGTTCTAGAATCTCGGAATCTCTTCTTCGATCTGA 2041
Query 2780 CAAGTGA-ATCTGAT 2793
||||||| | |||||
Sbjct 2042 CAAGTGAGA-CTGAT 2055
Score = 1003 bits (543), Expect = 0.0
Identities = 569/581 (98%), Gaps = 3/581 (1%)
Strand=Plus/Plus
Query 1095 GGGTGTTATTGAGGAAGACGAAGTGTGTTCAGTTGCAAGACTATTAGGTGATCTTGTTTC 1154
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 516 GGGTGTTATTGAGGAAGACGAAGTGTGTTCAGTTGCAAGACTCTTAGGTGATCTTGTTTC 575
Query 1155 ATATCGTGCATCTGGCACTGGCCATTTGGAATTTTTGGCAGGCCTTGCTCTGCTGCAGAA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 576 ATATCGTGCATCTGGCACTGGCCATTTGGAATTTTTGGCAGGCCTTGCTCTGCTGCA-AA 634
Query 1215 -TAATAGCCGGTTTCCTGAATCATATGAGGACTGTATGGAAGCTCCAGCATTTCATCTTC 1273
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GTAATAGCCAGTTTCCTGAATCATATGAGGACTGTATGGAAGCTCCAGCATTTCATCTTC 694
Query 1274 AGGAGGCTGCTATGTTGCATAAATTTGCAGAAGCTGCTTATACTGGGCCGCTGCTTGATG 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGGAGGCTGCTATGTTGCATAAATTTGCAGAAGCTGCTTATACTGGGCCGCTGCTTGATG 754
Query 1334 TTGGGAGAAATCCTGCCTTATTTTTATGCACATGGATTTGTAGGCAAGGGATTTTAACAC 1393
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 755 TTGGGAGAAATCCTGCTTTATTTTTATGCACATGGATTTGTAGACAAGGGATTTTAACAC 814
Query 1394 CTTGGAGCCGTAAATGGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAG 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTTGGAGCCGTAAATGGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAG 874
Query 1454 CTGCCTTCCTTAAGTTTATAAATTTTCCTGCTCATGTTCTTCGACGAGGTCGAATTTGTA 1513
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 875 CTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATTTGTA 934
Query 1514 GGGAGAAGTGTAAAGCAACATACTTTGTTGTAGTCTTACATTATCTTAGATGTGTTGTAA 1573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GGGAGAAGTGTAAAGCAACATACTTTGTTGTAGTCTTACATTATCTTAGATGTGTTGTAA 994
Query 1574 TTGCTGTTCGGGGTACTGAGACGGCTGAAGACCTCATAACTGATGGTTTAGGCCGTGCGT 1633
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TTGCTGTTCGAGGAACTGAGACGGCTGAAGACCTCATAACTGATGGTTTAGGCCGTGCGT 1054
Query 1634 GTTCACTAACTGTTGAGGACTTGGATGGACTAACAAAGTCA 1674
|||||||||||||||||||||||||||| |||||||| |||
Sbjct 1055 GTTCACTAACTGTTGAGGACTTGGATGGGCTAACAAA-TCA 1094
Score = 854 bits (462), Expect = 0.0
Identities = 498/516 (97%), Gaps = 0/516 (0%)
Strand=Plus/Plus
Query 502 ATGTGGATTTCGAGGTTGAAGAGAGTTAGAAGAACGATTATGGTTCTAGGCGTTGCCAAT 561
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGTGGATTTCGAGGTTGAAGAGAGTTAGGAGAACGATTATGGTTCTGGGCGTTGCCAAT 60
Query 562 TTCGTCGTGATTGTTTCCGGCTGCGTTCTTACTCTGGTTTCTGACTCAGGTTGCGACAGC 621
||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||
Sbjct 61 TTCGTCGTGATTGTTTCCGGCTGCGTTCTTACTCTCGTTTCTGACGCAGATTGCGACAGC 120
Query 622 GCCGGACAACTATTTCCCCTCTTCGCCGTTTGTTTCGCTGCCGGCGTCAAACTCGCCGCC 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCGGACAACTATTTCCCCTCTTCGCCGTTTGTTTCGCTGCCGGCGTCAAACTCGCCGCC 180
Query 682 ATGGTTAAGGTCGGTACTACTCAGGAACTCATGGCTATGACCATTATGGATTCTCCTACT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGTTAAGGTCGGTACTACTCAGGAACTCATGGCTATGACCATTATGGATTCTCCTACT 240
Query 742 CAGAACAACCACCAAAGAAAGTTGAAGTATAAGACCTGGCTTTGGTGGACTCGGTTTGCA 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGAACAACCACCAAAGAAAGTTGAAGTATAAGACCTGGCTTTGGTGGACTCGGTTTGCA 300
Query 802 ATGGTAATTACTGTATTGCAATTTATTGGTGCAACTTACCTTATGTTCCGTGTGGCCAAA 861
||||| |||||||||||||||||||||||||| ||||||||| | |||||| | ||||||
Sbjct 301 ATGGTGATTACTGTATTGCAATTTATTGGTGCCACTTACCTTTTATTCCGTCTCGCCAAA 360
Query 862 TATGTTTCCCGTGATGGATTGCCAAGGAATTGCGTTTTAGGGTTATCTCCAGACACTCGT 921
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 361 TATGTTTCCCGTGATGGATTGCCAAGGAATTGCGTTTTAGGGTTATCTCCGGACACTGGT 420
Query 922 GGGTGGAAGCAAACGCTTCAAGTTATCTTCTTGATCACAGTTTGCTTTGTTGCGCTGGCA 981
|||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 421 GGGTGGAAGCAAACACTTCAGGTTACCTTCTTGATCACTGTTTGCTTTGTTGCGCTGGCA 480
Query 982 CAATGCTTTACGGGATCAGATATATTGCAATGGCGG 1017
||||||||||||||||||||||||||||||||||||
Sbjct 481 CAATGCTTTACGGGATCAGATATATTGCAATGGCGG 516
> AT1G05785.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr1:1730249-1732626 FORWARD LENGTH=734
Length=734
Score = 296 bits (160), Expect = 7e-79
Identities = 170/175 (97%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 100 GGGGACTGTCTGTTTCGTCCTTGGACTCTTTCTTATATTTGTACGTTGGCCCATTGTCGG 159
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 307 GGGGACTATCTGTTTCGTCCTTGGACTCTTTCTAATATTTGTACGTTGGCCCATTATCGG 366
Query 160 CATTATCTTGGAGATATACGGTGTCATTGTCCTATTCGGCGGATTTTGGTCAACCGTAAA 219
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 367 CATTATCTTGGAGATATACGGTGTCATTGTCCTATTCGGCGGATTTTGGTCAACAGTAAA 426
Query 220 GGCATTCCTTTCCCAGATTCCTTTTGTCGGATGGATAATACAGTATCCTCTCATG 274
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGCATTTCTTTCCCAGATTCCTTTTGTCGGATGGATAATACAGTATCCTCTCATG 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143126288379
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5