BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311675
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05920.1 | Symbols: | Domain of unknown function (DUF313) ... 983 0.0
AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding ... 113 2e-24
> AT1G05920.1 | Symbols: | Domain of unknown function (DUF313)
| chr1:1796778-1798254 FORWARD LENGTH=1477
Length=1477
Score = 983 bits (532), Expect = 0.0
Identities = 724/815 (89%), Gaps = 20/815 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTCGCGTGATAACCaaaaaaaaCCCAAGACTGTCGCACAAGTaagagaagagaaa 60
|||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||| | ||
Sbjct 414 ATGATTTCGCGTTATAACCAAAAAAAGGCCAAGACTGTCGCACAAGTAAAAGAAG-GGAA 472
Query 61 agg-aagagaagagaagagaTGAGTTCGCGTGATAACC-aaaaaaaGACCAAGACTGTCG 118
||| ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||
Sbjct 473 AGGTAAGAGAAGAGAAGAGATGATTTCGCGTGATAACCGAACAAAA-CCCAAGACTGTCG 531
Query 119 CACAAGTAAGAGAAGAGAAAAGAAAGAGATTCTTCGATCGCGTCCCCAAAGGAAAAAGGG 178
||||||||||||| | |||||| |||||| |||||||| |||||||| ||||| |||||
Sbjct 532 CACAAGTAAGAGATGCGAAAAGGAAGAGAACCTTCGATCACGTCCCCAGAGGAACAAGGG 591
Query 179 AAGGTCACGCATACCTTCGCAAGGATCCAGAGCCGCAAGTTGCTTCTGTCCCCAAGACTG 238
|| |||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||
Sbjct 592 AACCTCACGCATACCTTCGCAATGATCCAGCGCCTCAAGTTGCTTCTGTCCCCAAGAGTG 651
Query 239 TCCCAGAAGATAAAGATGTGATATTGGATAGAATCTTGAGTAACGTCCCCAGAAGAAAAA 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TCCCAGAAGAGAAAGATGTGATATTGGATAGAATCTTGAGTAACGTCCCCAGAAGAAAAA 711
Query 299 AGACTACCTCTTACGAATACGTCCGACCAAAAGACCCACAAGAACCGATAAAGACACCGG 358
||||||| |||||||||| ||||| ||||||| ||||||||||||| | || ||
Sbjct 712 AGACTACTTCTTACGAATTCGTCCCACCAAAACACCCACAAGAACC------G-CAATGG 764
Query 359 AAGCACCAGAATGGCTTGTCCAGGT--TATGAACGGCGCTGATGATCCGAAGCTAGTCAT 416
| || | || || | | || ||||||||||||| ||||||||||||| ||||
Sbjct 765 CTTCTCC---A-GG-TTAT-GA-GTCGCATGAACGGCGCTGGTGATCCGAAGCTAATCAT 817
Query 417 AGTGAAGACTCTGGACTCGAACGATGTTGATCCACTTCAAAACCGTCTCTCAATCCCTAT 476
|| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 818 AGAGAAGAATCTGGACTCGAACGATGTTGATCCACGTCAAAACCGACTCTCAATCCCTAT 877
Query 477 CAATAGCGTAATCCAAAACGATTTCTTGACGCTTGACGAGTCAAGATTGATTGATGACGA 536
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 878 CAATACCGTAATCCAAAACGATTTCTTGACGCTTGACGAGTCAAGGTTGATTGATGAAGA 937
Query 537 CGACATCACTAACCAAGGGAATATGGGTGTGGCATCGTTTCTTATGGATCAACGTAGTAA 596
||| ||||||||| |||||||||||||||| ||| |||||||| | ||||| || | |||
Sbjct 938 CGAAATCACTAACGAAGGGAATATGGGTGTTGCAGCGTTTCTTGTTGATCAGCGAACTAA 997
Query 597 AAAGTGGAACGTAGGTTTTAAGCAATGGTTTATGACGACTGATTCAGGGAGCAGCTACTG 656
||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 998 GAAGTGGAACATGGGTTTTAAACAATGGTTTATGACGACTGATTCAGGGAGCAGTTACTG 1057
Query 657 GAGTTTTGTGTTGAGAGGTGAATGGAGCAACGTCGTTAAGACTAATGGATTGAAAGAAGG 716
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1058 GAGTTTTGTGTTGCGAGGTGAATGGAGCAACGTCGTTGAGACTAATGGACTGAAAGAAGG 1117
Query 717 CGACAACATCAGTCTTTGGTCTTTCAGGTCCAATGAAATCCTCTGCTTTGCCCTTGTTCC 776
|||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1118 CGACAAAATCAGCCTTTGGTCTTTCAGGTCCAACGATATCCTCTGTTTTGCCCTTGTTCC 1177
Query 777 TCCCACGAGCTCTGTTGTTGATTCTGTAGATAAGT 811
||| ||||||||||||||||| ||| |||||||||
Sbjct 1178 TCCAACGAGCTCTGTTGTTGAGTCTTTAGATAAGT 1212
Score = 178 bits (96), Expect = 8e-44
Identities = 114/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 25 aaaCCCAAGACTGTCGCACAAGTaagagaagagaaaaggaagagaagagaagagaTGAGT 84
|||||||||||| ||||| ||||||||||||||| | | ||||||||||||||||||| |
Sbjct 282 AAACCCAAGACTTTCGCAGAAGTAAGAGAAGAGATATGTAAGAGAAGAGAAGAGATGATT 341
Query 85 TCGCGTGATAACCaaaaaaaGACCAAGACTGTCGCACAAGTAAGAGAAGAGAAAAGAAAG 144
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 342 TCGCGTGATAACCAAAAAAAAACCAAGACTGTCGCACAAGTAAGAGAAGAGAAAGGTAAG 401
Query 145 AGA 147
|||
Sbjct 402 AGA 404
> AT3G25182.1 | Symbols: | Pseudogene of AT5G24050; DNA binding
protein | chr3:9171056-9172204 REVERSE LENGTH=1026
Length=1026
Score = 113 bits (61), Expect = 2e-24
Identities = 236/319 (74%), Gaps = 17/319 (5%)
Strand=Plus/Plus
Query 457 AACCGTCTCTCAATCCCTATCAATAGCGTAATCCAAAACGATTTCTTGACGCT-TGACGA 515
|||||||||||||| ||| |||| | | || ||| |||||||||||||| | || ||
Sbjct 676 AACCGTCTCTCAATGCCTTTCAACAACTTACTCCGCAACGATTTCTTGAC-TTCTGTGGA 734
Query 516 GTCAAGATTGATTGATGACGACGACATCACTAACCA-AGGGAATATGGGTGTGGCATCGT 574
||||||| | | | | ||| | ||||||| ||| | | ||| || || |||| | ||
Sbjct 735 GTCAAGAATCA-T-A-GACAAAGACATCAAAAACGATA-AGAAGATTGGAGTGGGAGCGA 790
Query 575 TTCTTATGGATCAAC-GTAGTAAAAAGTGGAACGTAGGT-TTTAAGCA-ATGGTTTATGA 631
||||| ||||||||| || |||| |||||| || | | || ||| | |||| ||||
Sbjct 791 TTCTTGTGGATCAACGGT-GTAAGAAGTGGGGTGT-GATGTTAAAG-AGATGGGAGATGA 847
Query 632 CGACTGATTCAGGGAGCAGCTA-CTGGAGTTTTGTGT-TGAGAGGTGAATGGAGCAACGT 689
|| || ||||| | || | ||||| || | | | ||| |||| | | |
Sbjct 848 AGAAGGAATCAGGTA-AAGGAAGCTGGA-ATTACAATCTAATCTGTGGGTGGAACGATAT 905
Query 690 CGTTAAGACTAATGGATTGAAAGAAGGCGACAACATCAGTCTTTGGTCTTTCAGGTCCAA 749
||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 906 TGTTGAGGCTAATGGATTGAAAGAAGGCGACAACATTAGTCTTTGGTCATTCAGGTCCTG 965
Query 750 TGAAATCCTCTGCTTTGCC 768
|| ||||||||||||||||
Sbjct 966 TGGAATCCTCTGCTTTGCC 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5