BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311676
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05930.1 | Symbols: | Domain of unknown function (DUF313) ... 662 0.0
> AT1G05930.1 | Symbols: | Domain of unknown function (DUF313)
| chr1:1799418-1800933 FORWARD LENGTH=957
Length=957
Score = 662 bits (358), Expect = 0.0
Identities = 776/962 (81%), Gaps = 92/962 (10%)
Strand=Plus/Plus
Query 84 GGCTACGTTGAATGATGCAGAACAACGCGCAAGAAAAGGAAAAGCCAAGATTGTCTCTAA 143
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 66 GGCTACGTTGAGTGATGAAGAACAACGCGCAAGAAAAGGAAAAGCCAAGATTGTCTGTAA 125
Query 144 AGAAGAAGACAACGTCTTTATCaaaaagaaa-aaaGACGATGACGAAGAGAGCGAGAAGA 202
|||||||||| |||||||||||||||||||| ||| | | || ||||||||||||||||
Sbjct 126 AGAAGAAGACCACGTCTTTATCAAAAAGAAAGAAA-AATACGAGGAAGAGAGCGAGAAGA 184
Query 203 AGAAATTCTTCAGTCATGTCCCCAGAAAGATAAGGCCTGCGCTTAGATACCCACAACCTA 262
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 GGGAATTCTTCAGTCATGTCCCCAGAAAGATAAGGCCTGCGCTTAGATACCCACAACCTA 244
Query 263 ACTTTGAAAACCCTAATGGGGCTTCTACTTCTTCTTCATCGCCTTGTTCTTC-AACCTTA 321
|||||||||||||||||||||||||| |||||| | | | || |||| || |
Sbjct 245 ACTTTGAAAACCCTAATGGGGCTTCTTCTTCTT-TAAA-C---TTACCCTTCGAAGAAGA 299
Query 322 CCCTTTGGAAACTACATCCCTGA-TGAGTACAAGAAGACAGAGATGAAAAACCCATCAAA 380
| | | |||||| |||| | | ||||||||||| |||| | ||||||| | ||
Sbjct 300 C--T----A--CTACATGGCTGAGT-ACTACAAGAAGACGGAGACCATAAACCCACCTAA 350
Query 381 CACTAATCACCAATGGTCTCCATATCCGTGGCT-AACGGAGTACACAAACCCCACCGAGG 439
| || |||||||||||||||| | | ||| || ||||||||||||| |||| | ||
Sbjct 351 CCCTTATCACCAATGGTCTCCTTCTTCGTT-CTTAACGGAGTACACACACCCTAG-GA-- 406
Query 440 TGCGTGAGATGTTACAGAGAAGGAGTAGTGGTGGATTCAAGAAACC-GAAGGTAACtttt 498
||| |||| ||||||| | | |||| |||||| | ||| | |||||||| |
Sbjct 407 TGCTTGAGGTGTTACATCGC-----T-GTGG---ATTCAACAGACCAGT-GGTAACTTGT 456
Query 499 t-ttCCAAGGA-GGACGTGGGGGATGCCGTGGTGGCAATTT-C-AGGTGATGAGAGACAT 554
| ||| ||||| || | ||| ||||| |||||||| || | ||||||||| ||||||
Sbjct 457 TATTC-AAGGACGGCCA-GGGAGATGCGGTGGTGGC--TTCGCCAGGTGATGAAAGACAT 512
Query 555 GA-ATGGAGAAGACCTGACACTAATCTTAGAGAAGACTCTGTCCA-AATCTGATGTCAAC 612
|| | | ||||||||| ||||| |||||||||||||||||||||| || ||||||| | |
Sbjct 513 GAGA-GCAGAAGACCTAACACTTATCTTAGAGAAGACTCTGTCCACAA-CTGATGTGATC 570
Query 613 CCAAC-AC---TGGGCCGTCTCTTAATGCCTTTCAACAGCTTAATCAGGAACGAGTTCTT 668
|||| || ||| |||| ||| ||||| ||||||||| |||||||| ||||| |||||
Sbjct 571 ACAACGACACATGG-CCGTTTCTCAATGCATTTCAACAGATTAATCAGTAACGACTTCTT 629
Query 669 GACGCCTGAGGAGCGGAGTATCATAGAAGAAGATATCGACAATGATGATGATGAGAAGAT 728
|| ||||||||||||||||||| |||||||||||| | |||||||||| || || |
Sbjct 630 GAAGCCTGAGGAGCGGAGTATCCTAGAAGAAGATACCTACAATGATGA-GACGAT--G-- 684
Query 729 GGAAGTGGGAGCCATTCTCGTGGATCCAAGGTTTGAAAAGTGGGGTGTGGTTTTGAAGAA 788
||| || ||||||||||||||||||| ||||| | |||||||| ||||| |||||||||
Sbjct 685 GGA-GTTGGAGCCATTCTCGTGGATCAAAGGTCTCAAAAGTGGAGTGTGATTTTGAAGA- 742
Query 789 ATGGGAGGTGGGGAATCATTCAGGAAACGTAAGCTGGAATTACTGTTTGACTTGTGGTTG 848
| | ||||| | ||| || || || || ||| | |||||| ||
Sbjct 743 --G--A--TGGGG---C---CAG-AAT--TA--CT----TT-CTGA--G--TTGTGGCTG 776
Query 849 GAACGATGTTGTTAAGGCTAATGATTTGAAAGAC-GGTGACAACATCGGTGTTTGGGCGT 907
|||||| ||||||||||||||| | ||||||| | || ||| ||||| || |||||||||
Sbjct 777 GAACGACGTTGTTAAGGCTAATAAATTGAAAG-CTGGCGACGACATCTGTCTTTGGGCGT 835
Query 908 TTAGGTGCGGTGGAGTCCTCTGTTTTGCCCTTATGC-----CGTGGAATCCTATGTTT-G 961
||||||||| ||||||||||||||||||| | | || ||||||||||| ||||| |
Sbjct 836 TTAGGTGCGATGGAGTCCTCTGTTTTGCCATGAGGCAGTGGCGTGGAATCCTCTGTTTTG 895
Query 962 CCCTTGTTCCTCCTCTTACATTGAGACAGAGTAGCTCTTCCAATGCTCTCCGTCTCTGCT 1021
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 896 CTCTTGTTCCTCCTCTTACATTGAGACAGAGTAGCTCTTCCAATGCTCGCCGTCTCTGCT 955
Query 1022 AA 1023
||
Sbjct 956 AA 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5