BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311681
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06020.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1624 0.0
AT1G06030.1 | Symbols: | pfkB-like carbohydrate kinase family ... 1317 0.0
> AT1G06020.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:1824548-1826101 FORWARD LENGTH=1038
Length=1038
Score = 1624 bits (879), Expect = 0.0
Identities = 986/1039 (95%), Gaps = 2/1039 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCATCCACCGGCGAGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGAC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCATCATCCACCGGCGAGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGAC 60
Query 61 TTCGTCCCTACTGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAGGCTCCG 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TTCGTCCCTACCGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAAGCTCCC 120
Query 121 GGCGGTGCTCCGGCCAACGTCGCCATCGCTGTCTCACGTCTCGGAGGTCGTGCCGCCTTC 180
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 GGCGGTGCTCCGGCCAACGTCGCCATCGCTGTTTCACGTCTTGGAGGTCGTGCCGCCTTC 180
Query 181 GTAGGGAAGCTCGGAGACGATGATTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAAC 240
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTGGGAAGCTGGGAGACGATGATTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAAC 240
Query 241 GGTGTCGACGATCAGGGGATCAATTTCGACAAAGGAGCAAGAACCGCACTCGCTTTTGTG 300
|||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||
Sbjct 241 GGTGTCGACGATCAGGGGATCAATTTCGACGAAGGGGCGAGAACTGCACTCGCTTTTGTC 300
Query 301 ACTCTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATG 360
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTTTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATG 360
Query 361 CTTCTCCGGCCAGACGAACTCAACCTCGAACTAATCAGATCCGCGAAGGTGTTCCACTAT 420
|||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||
Sbjct 361 CTTCTCCGGCCAGATGAACTGAATCTTGAACTTATCAGATCCGCGAAAGTGTTCCACTAT 420
Query 421 GGATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTG 480
Query 481 GCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTGAGGGAACCTCTTTGGCCA 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTTTGGCCA 540
Query 541 TCCCCTGAAGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAG 600
|| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCACCTGAAGAAGCTAGGACACAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAG 600
Query 601 GTCAGTGACGTTGAGCTTGAGTTCTTGACCGAAAACAAAACGATGGATGATAAGACAGCT 660
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 601 GTCAGTGACGTGGAGCTTGAATTCTTGACCGAAAACAAAACCATGGATGATAAGACAGCA 660
Query 661 ATGTCTCTATGGCATCCCAATCTGAAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGT 720
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGTCTCTATGGCATCCCAACCTTAAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGT 720
Query 721 ACTTATTTCACAAAGAATTTCCATGGATCAGTTGAAACATTCCTTGTGGACGC-GATAGA 779
||||||||||||||||| ||||||||||| || |||||||||| ||||||||| | | ||
Sbjct 721 ACTTATTTCACAAAGAAATTCCATGGATCGGTAGAAACATTCCATGTGGACGCCG-TGGA 779
Query 780 TACTACCGGAGCTGGAGATTCGTTTGTTGGTGCGCTTCTAAAACAGATTGTTGATGACCA 839
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 780 TACTACCGGAGCTGGAGATTCGTTTGTTGGTGCACTTCTACAACAGATTGTTGATGACCA 839
Query 840 ATCCGTACTCGAGGATGAAGCTAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 899
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 840 GTCCGTACTCGAGGATGAAGCGAGGTTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 899
Query 900 AGCCATCACGACAACTAAAAAGGGAGCCATACCAGCTCTTCCTACAGACAGTGAAGCTCT 959
||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 900 AGCCATCACAACAACTAAAAAAGGAGCCATTCCAGCTCTTCCTACAGACATTGAAGCTCT 959
Query 960 TAGTTTTCTTAAAGACAAAAAGAAACGTCAAACTTATCTTAAATTCTCAAAATTGTGTTG 1019
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 960 CAGTTTTCTTAAAGACCAAAAGAAACGTCAAACCAATCTTAAATTCTCAAAATGGTGTTG 1019
Query 1020 TACGGCTCCTCCTTGTTAA 1038
||||||| |||||||||||
Sbjct 1020 TACGGCTTCTCCTTGTTAA 1038
> AT1G06030.1 | Symbols: | pfkB-like carbohydrate kinase family
protein | chr1:1826880-1828161 FORWARD LENGTH=1021
Length=1021
Score = 1317 bits (713), Expect = 0.0
Identities = 908/1002 (91%), Gaps = 14/1002 (1%)
Strand=Plus/Plus
Query 7 TCATCCACCGGCG---AGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGACTTC 63
||||||| ||||| | ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 7 TCATCCAACGGCGATAATAAAGGTCTCGTCGTTAGCTTCGGCGAGATGCTCATTGACTTC 66
Query 64 GT-CCCTACTGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAGGCTCCGGG 122
|| ||| || | |||||||||||||||||| |||||| | ||||||||||| ||||| ||
Sbjct 67 GTGCCC-ACGGAATCCGGCGTCTCCCTCTCTGAATCCTCTGGATTTCTCAAAGCTCCTGG 125
Query 123 CGGTGCTCCGGCCAACGTCGCCATCGCTGTCTCACGTCTCGGAGGTCGTGCCGCCTTCGT 182
|||||||| || |||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 126 TGGTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCGT 185
Query 183 AGGGAAGCTCGGAGACGATGA-TTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAACG 241
|| || ||||| |||||||| ||| || |||||||| ||||||||||||||||||||||
Sbjct 186 CGGAAAACTCGGGGACGATGAGTTT-GGCCATATGCTTGCCGGAATCTTGAGAAAGAACG 244
Query 242 GTGTCGACGATCAGGGGATCAATTTCGACAAAGGAGCAAGAACCGCACTCGCTTTTGTGA 301
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 245 ATGTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGTGA 304
Query 302 CTCTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGC 361
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CTCTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGC 364
Query 362 TTCTCCGGCCAGACGAACTCAACCTCGAACTAATCAGATCCGCGAAGGTGTTCCACTATG 421
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 365 TTCTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACTATG 424
Query 422 GATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGG 481
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 425 GATCAATAAGTTTGATTACAGAGCCATGTAGATCAGCTCACATGAAGGCGATGGAGGTGG 484
Query 482 CGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTGAGGGAACCTCTTTGGCCAT 541
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 485 CGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGGCCAT 544
Query 542 CCCCTGAAGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAGG 601
|||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 545 CCCCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATTAAGG 604
Query 602 TCAGTGACGTTGAGCTTGAGTTCTTGACCGAAAACAAAACGATGGATGATAAGACAGCTA 661
|||||||||| ||||||||||||||||| | |||||||||||| |||||| |||||||||
Sbjct 605 TCAGTGACGTCGAGCTTGAGTTCTTGACAGGAAACAAAACGATTGATGATGAGACAGCTA 664
Query 662 TGTCTCTATGGCATCCCAATCTGAAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGTA 721
||||||| |||||||| ||| ||||||||||||||||||| || |||||||| ||||||
Sbjct 665 TGTCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAATGGATGT- 723
Query 722 C-TTATTTCACAAAGAATTTCCATGGATCAGTTGAAACATTCCTTGTGGACGC-GATAGA 779
| ||| | ||| ||| ||||||||||||| |||||||| |||| ||| ||||| | | ||
Sbjct 724 CGTTACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTTGACGCTG-TGGA 782
Query 780 TACTACCGGAGCTGGAGATTCGTTTGTTGGTGCGCTTCTAAAACAGATTGTTGATGACCA 839
|||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 783 TACTACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTTGATGATCA 842
Query 840 ATCCGTACTCGAGGATGAAGCTAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 899
||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 843 ATCTGTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 902
Query 900 AGCCATCACGACAACTAAAAAGGGAGCCATACCAGCTCTTCCTACAGACAGTGAAGCTCT 959
||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 903 AGCAATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTACAGATTGTGAAGCTCT 962
Query 960 TAGTTTTCTTAA-AGACAAAAAGAA-ACGTCAAACTTATCTT 999
||||||||||| | |||| |||| | || |||||| ||||
Sbjct 963 CAGTTTTCTTAAGATACAAGTAGAATA-GTAAAACTTCTCTT 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5