BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311691
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06130.1 | Symbols: GLX2-4 | glyoxalase 2-4 | chr1:1857767-1... 1537 0.0
AT2G31350.1 | Symbols: GLX2-5 | glyoxalase 2-5 | chr2:13368292-... 952 0.0
AT1G06135.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 375 5e-103
AT1G06137.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 315 1e-84
> AT1G06130.1 | Symbols: GLX2-4 | glyoxalase 2-4 | chr1:1857767-1860730
REVERSE LENGTH=1353
Length=1353
Score = 1537 bits (832), Expect = 0.0
Identities = 906/943 (96%), Gaps = 0/943 (0%)
Strand=Plus/Plus
Query 516 GAAGCTAGCTAGTCAGCCATGTGTGAGGCCTTGCGTGAGACAGCTTCACCTCAGAAAGGG 575
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 144 GAAGCTAGTTAGTCAGCCATGTGTGAGGCCTTGCGTGAGACAGCTTCACGTCAGAAAGGG 203
Query 576 TCTTGTCTCTGGTGCCATGAAGCTTTTCTCTTCCCCTCTTAGGACTTTGCGTGGTGCTGG 635
|||||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 204 TCTTGTCTCTGGTGTCATGAAGCTGTTCTCTTCACCTCTTAGGACTTTGCGTGATGCTGG 263
Query 636 TAAATCCGTTCGCTTTTCAAGGTTCTGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAAT 695
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 264 TAAATCCGTTCGCATTTCAAGATTCTGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAAT 323
Query 696 TGAACTGGTGCCATGTCTTACGGACAACTATGCTTATATTTTACATGACGAGGATACTGG 755
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 324 TGAACTGGTGCCATGTCTTACGGACAACTATGCTTATATCTTACATGATGAGGATACCGG 383
Query 756 TACAGTTGGTGTCGTTGACCCTTCTGAAGCTGTACCTGTTATGGATGCCCTGCAGAAGAA 815
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 384 TACAGTTGGTGTGGTTGACCCTTCTGAAGCTGTACCTGTTATGGATGCCCTCCAGAAGAA 443
Query 816 TAGTCGAAATCTAACTTACATATTAAATACACATCACCATTATGATCACACTGGTGGCAA 875
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TAGTCGAAATCTAACTTATATATTAAATACACATCACCATTATGATCACACTGGTGGCAA 503
Query 876 TTTGGAATTAAAAGACAGGTATGGTGCAAAGGTGATCGGCTCAGCTGTAGATAGGGACCG 935
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 504 TTTGGAATTAAAAGACAGGTATGGTGCAAAGGTGATCGGCTCAGCTGCAGATAGGGACCG 563
Query 936 CATACCTGGAATTGATGTAGCCTTGAAAGATGGTGACAAATGGATGTTTGCTGGCCATGA 995
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 564 GATTCCTGGAATTGATGTAGCCTTGAAAGATGCTGACAAATGGATGTTTGCTGGCCATGA 623
Query 996 AGTACATGTTATGGAAACTCCTGGCCATACTAGAGGCCATATTAGTTTCTACTTTCCAGG 1055
||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 624 AGTCCATATTATGGAAACTCCTGGCCACACCAGAGGCCATATTAGTTTCTACTTTCCAGG 683
Query 1056 GGCACGAGCAATTTTCACCGGGGACACCTTATTTAGCTTATCATGTGGTAAGCTCTTCGA 1115
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 684 GGCACGAGCAATTTTCACCGGGGACACCTTGTTTAGCTTATCATGTGGTAAACTCTTCGA 743
Query 1116 AGGTACTCCAGAGCAGATGCTAGCTTCTCTCCAGAGGATAATTGCTTTGCCAGATGATAC 1175
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 744 AGGTACTCCAGAGCAGATGCTAGCTTCTCTACAGAGGATAATTGCGTTGCCAGATGACAC 803
Query 1176 AAGCGTATACTGTGGCCATGAATACACACTGAGTAATTCCAAATTTGCGTTGTCTATAGA 1235
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 804 AAGCGTATACTGTGGCCATGAATATACACTGAGTAATTCCAAGTTTGCATTGTCTATAGA 863
Query 1236 ACCAACAAACGAAGTACTCCAGTCTTATGCAGCCTACGTTGCAGAACTCCGTGAGAAGAA 1295
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 864 ACCAACAAACGAAGTGCTCCAGTCTTATGCAGCCTACGTTGCAGAACTCCGTGACAAGAA 923
Query 1296 ACTACCAACGATTCCAACAACGATGAAGATGGAGAAAGCCTGTAACCCGTTTCTCCGCAC 1355
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 924 ATTACCAACGATTCCAACGACGATGAAGATGGAGAAAGCTTGTAACCCGTTTCTCCGCAC 983
Query 1356 TGGGAACACAGATATCCGTCGAGCTTTAGGTATTCCAGAAACAGCAGATGAAGCAGAAGC 1415
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 984 TGAGAACACAGATATCCGTCGAGCTTTAGGTATTCCAGAGACAGCAGATGAAGCAGAAGC 1043
Query 1416 TCTGGGTATTATAAGAAGAGCAAAGGACAATTTCAAAGCTTAG 1458
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TCTGGGTATTATAAGAAGAGCAAAGGACAATTTCAAAGCTTAG 1086
> AT2G31350.1 | Symbols: GLX2-5 | glyoxalase 2-5 | chr2:13368292-13371057
FORWARD LENGTH=1389
Length=1389
Score = 952 bits (515), Expect = 0.0
Identities = 795/928 (86%), Gaps = 27/928 (3%)
Strand=Plus/Plus
Query 543 GCCTTGCGTGAGACAGCTTCACCTCAGAAAGGGTCTTGTCT-CTG-GTGCCATGAAGCTT 600
||| || |||||||||||| || | |||||| ||||||| | | | ||| ||||||||
Sbjct 228 GCCATGTGTGAGACAGCTTAACATAAGAAAGAGTCTTGTGTGCAGAGTG--ATGAAGCTG 285
Query 601 TTCTCTTCCCCTCTTAGGACTTTGCGTGGTGCTGGTAAATCCGTTCGCTTTTCAAGGTTC 660
||||||| |||||||||||||||||||||||||||||||| | || |||||| ||||
Sbjct 286 GTCTCTTCACCTCTTAGGACTTTGCGTGGTGCTGGTAAATCTATCCGAGTTTCAAAGTTC 345
Query 661 TGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAATTGAACTGGTGCCATGTCTTACGGAC 720
|||||||||||||||| || |||||||||||||||||||||||||| || |||| |||
Sbjct 346 TGCAGTGTCTCCAATG--TC-TCCTCATTGCAAATTGAACTGGTGCCTTGCCTTAAGGAT 402
Query 721 AACTATGCTTATATTTTACATGACGAGGATACTGGTACAGTTGGTGTCGTTGACCCTTCT 780
|||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 403 AACTATGCTTATATCTTGCATGACGAGGATACTGGTACAGTTGGGGTGGTTGACCCTTCT 462
Query 781 GAAGCTGTACCTGTTATGGATGCCCTGCAGAAGAATAGTCGAAATCTAACTTACATATTA 840
||||||| |||| |||| ||| | || ||| || | |||| |||||||| || ||||||
Sbjct 463 GAAGCTGAACCTATTATCGATTCGTTGAAGAGGAGTGGTCGTAATCTAACATATATATTA 522
Query 841 AATACACATCACCATTATGATCACACTGGTGGCAATTTGGAATTAAAAGACAGGTATGGT 900
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 523 AATACACATCATCATTATGATCACACTGGTGGGAATTTGGAATTAAAAGACAGGTACGGG 582
Query 901 GCAAAGGTGATCGGCTCAGCTGTAGATAGGGACCGCATACCTGGAATTGATGTAGCCTTG 960
||||||||||| ||||||||| | |||| ||||| || |||||||||||| | ||||||
Sbjct 583 GCAAAGGTGATTGGCTCAGCTATGGATAAAGACCGGATTCCTGGAATTGATATGGCCTTG 642
Query 961 AAAGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTACATGTTATGGAAACTCCTGGC 1020
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 643 AAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTCCATGTTATGGATACTCCTGGC 702
Query 1021 CATACTAGAGGCCATATTAGTTTCTACTTTCCAGGGGCACGAGCAATTTTCACCGGGGAC 1080
|| || | ||||||||| || || ||||||||||| ||||||| || ||||||||||||
Sbjct 703 CACACAAAAGGCCATATCAGCTTATACTTTCCAGGATCACGAGCGATCTTCACCGGGGAC 762
Query 1081 ACCTTATTTAGCTTATCATGTGGTAAGCTCTTCGAAGGTACTCC-AGAGCAGATGCTAGC 1139
|| | |||||||||||||||||||| ||||| ||||| ||||| | |||||||||| ||
Sbjct 763 ACGATGTTTAGCTTATCATGTGGTAAACTCTTTGAAGGCACTCCTA-AGCAGATGCTTGC 821
Query 1140 TTCTCTCCAGAGGAT-A-ATTGCTTTGCCAGATGATACAAGCGTATACTGTGGCCATGAA 1197
||||||||| | ||| | || |||| |||||||| |||||| |||||||||| ||||||
Sbjct 822 TTCTCTCCAAAAGATCACAT--CTTTACCAGATGACACAAGCATATACTGTGGTCATGAA 879
Query 1198 TACACACTGAGTAATTCCAAATTTGCGTTGTCTATAGAACCAA-CAAACGAAGTACTCCA 1256
|| ||||||||||||||||| |||||||||||| |||| |||| ||| ||||||||| ||
Sbjct 880 TATACACTGAGTAATTCCAAGTTTGCGTTGTCTCTAGAGCCAAACAA-CGAAGTACTTCA 938
Query 1257 GTCTTATGCAGC-CTACGTTGCAGAACTCCGTGAG-AAGAAACTACCAACGATTCCAACA 1314
||| |||||||| | | |||||||| ||||| || |||||| ||||||||||||| |||
Sbjct 939 GTCCTATGCAGCTC-ATGTTGCAGAGCTCCGA-AGCAAGAAATTACCAACGATTCCGACA 996
Query 1315 AC-GATGAAGATGGAGAAAGCCTGTAACCCGTTTCTCCGCA-CTGGGAACACAGATATCC 1372
|| | |||||||||||||||| |||||||| || ||||||| || || ||||||||||
Sbjct 997 ACAG-TGAAGATGGAGAAAGCTTGTAACCCCTTCCTCCGCAGCTCA-AATACAGATATCC 1054
Query 1373 GTCGAGCTTTAGGTATTCCAGAAACAGCAGATGAAGCAGAAGCTCT-GGGTATTATAAG- 1430
|||| |||||| | |||||||| | |||||||||||||||||| | ||| ||||| |
Sbjct 1055 GTCGGGCTTTACGCATTCCAGAGGCCGCAGATGAAGCAGAAGCTTTAGGG-ATTATCCGG 1113
Query 1431 AAGAGCAAAGGACAATTTCAAAGCTTAG 1458
|| ||||||||| ||||| ||||||||
Sbjct 1114 AA-AGCAAAGGATGATTTCTAAGCTTAG 1140
> AT1G06135.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G31345.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr1:1862197-1862742 FORWARD LENGTH=546
Length=546
Score = 375 bits (203), Expect = 5e-103
Identities = 215/221 (97%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 260 GTACTCAACCATGGCACCTACGTGTACCACGGGGAATATTGGTGCAACCATTTCGACCTG 319
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct 324 GTACTCAACCATGGCACCTAGGTGTACCACGGGGAATGTTGGTGCAACCATTTGGACCTG 265
Query 320 ACCCGCTGACTGGACCCCTTTGCAGTGCTTGGAACACGAACCGGATCTCATCGGCAGCTG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 ACCCGCTGACTGGACCCCTTTGCAGTGCTTGGAACACGAACCGGATCTCATCGGCAGCTG 205
Query 380 TTGGGAACGGCCTCATTGCTTCAACTTGCTTGATGTCCAAGAATACAACAAAAAAGGCAA 439
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 204 TTGGGAACGGCCTCATTGCTTCAACTTGCTTGACGTCCAAGAATACAACAAAAAAGGCAA 145
Query 440 CTAAGATAACAACGATCATTACTTGTCTCTTCATCTTCCTC 480
|||| ||||||| ||||||||||||||||||||||||||||
Sbjct 144 CTAACATAACAAAGATCATTACTTGTCTCTTCATCTTCCTC 104
> AT1G06137.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G06135.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:1863544-1863750 REVERSE LENGTH=207
Length=207
Score = 315 bits (170), Expect = 1e-84
Identities = 193/204 (95%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAACAATTGATACTTGGAGTGATTTTGCTCGGACTATTCGTAATTTTCTTGAAC 60
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAGAAACAATTAATACTTGGAGTGATTTTGCTCGGACTATTCGTGATTTTCTTGAAC 60
Query 61 ACCACACAAGTCGAAGCCGCTAGGCCGCTCCAAGCCGACGGTGAGATCCGATTCGTGTTC 120
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 61 ACCACACAAGTCGAAGCCGCTAGGCCGCTTCAAGCCGACAGTGAGATCCGATTCGTGTTC 120
Query 121 CAGTTGCTGCAAAGGGGTTC-GGTTCCAGGGTCAGGTCCGAACGGTTGCACAAACATCCC 179
||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 121 CAGTTGCTGCAAAGGGG-CCAGGTTATAGGGTCAGGTCCGAACGGTTGCACAAACATCCC 179
Query 180 AGGAGGTTCGGGCACGTGTCGCCC 203
||||||||| ||||| ||||||||
Sbjct 180 AGGAGGTTCTGGCACTTGTCGCCC 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5