BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311699
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06210.1 | Symbols: | ENTH/VHS/GAT family protein | chr1:18... 1868 0.0
> AT1G06210.1 | Symbols: | ENTH/VHS/GAT family protein | chr1:1897203-1899208
FORWARD LENGTH=1481
Length=1481
Score = 1868 bits (1011), Expect = 0.0
Identities = 1105/1152 (96%), Gaps = 0/1152 (0%)
Strand=Plus/Plus
Query 1 ATGGACAAATTGAAGATAGCAGAATGGGGAGAGAAGCTGAAGACTGGTGGAGCTCAGATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 ATGGACAAATTGAAGATAGCAGAATGGGGAGAGAAGCTGAAGACTGGTGGAGCTCAGATG 167
Query 61 AGCAGAATGGTGAGTGAGAAAGTGAAAGATATGCTTCAAGCTCCGACCTTGGAATCGAAA 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 168 AGCAGAATGGTGAGTGAGAAAGTGAAAGATATGCTTCAAGCTCCAACCTTGGAATCCAAA 227
Query 121 ATGGTGGATGAAGCTACTTTGGAGACATTAGAGGAGCCTAATTGGGGAATGAACATGAGG 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 228 ATGGTGGATGAAGCTACTTTAGAGACTTTAGAGGAGCCTAATTGGGGAATGAACATGAGG 287
Query 181 ATATGTGCTCAGATTAACAACGATGAGTTTAACGGCACTGAGATTGTTAGAGCCATTAAG 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 288 ATTTGTGCTCAGATTAACAACGATGAGTTTAACGGCACTGAGATTGTTAGAGCTATCAAG 347
Query 241 AGGAAGATCTCAGGTAAGAGCCCTGTGAGCCAAAGGCTGAGCCTTGAGCTTTTGGAGGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 348 AGGAAGATCTCAGGTAAGAGCCCTGTGAGCCAAAGGCTGAGCCTTGAGCTTTTAGAGGCT 407
Query 301 TGTGCTATGAACTGCGAGAAGGTTTTCTCTGAAGTTGCTTCTGAAAAAGTTCTTGATGAG 360
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 408 TGTGCTATGAATTGCGAGAAGGTTTTCTCTGAAGTTGCTTCTGAGAAAGTTCTTGATGAG 467
Query 361 ATGGTTTGGTTGATCAAGAACGGAGAAGCTGATAACGAGAACAGAAAGCGAGCTTTTCAG 420
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 468 ATGGTTTGGTTAATCAAGAACGGAGAAGCTGATTCCGAGAACAGAAAGCGAGCTTTTCAG 527
Query 421 CTTATTAGAGCTTGGGGACAATCCCAAGAACTTACTTATCTTCCTGTTTTCCACCAGACT 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 528 CTTATTAGAGCTTGGGGACAATCCCAAGATCTTACTTATCTTCCTGTTTTCCACCAGACT 587
Query 481 TATATGGGCTTGGAAGGCGAAAACGGATTACATGCTCGAGGTGAAGAGAATTCAATGCCG 540
|||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 588 TATATGAGCTTGGAAGGCGAAAATGGATTACACGCTCGAGGTGAAGAGAATTCAATGCCG 647
Query 541 GGACAAAGTTCTCTGGAGTCTCTTATGCAACGGCCTGTTCCAGTGCCTCCACCTGGTAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GGACAAAGTTCTCTGGAGTCTCTTATGCAACGGCCTGTTCCAGTGCCTCCACCTGGTAGC 707
Query 601 TATCCAGTTCCTAATCAAGAACTGGCTCGTGGGGACGATGATGGTCTTGACTATAACTTT 660
||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 708 TATCCGGTTCCTAATCAAGAACAGGCTCTTGGGGACGATGATGGTCTTGACTATAACTTT 767
Query 661 GGAAACTTATCGATAAAGGATAAGAAAGAACAGATTGAGATTACCCGGAACAGCCTCGAA 720
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 768 GGGAACTTATCGATAAAGGATAAGAAAGAACAGATTGAGATTACACGGAACAGCCTCGAA 827
Query 721 TTGCTCGCTAGCATGTTGAATACTGAAGGGAAGCCGAATCACACAGAGGACGATCTCACG 780
|||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 828 TTGCTCTCTAGCATGTTGAATACTGAAGGAAAGCCAAATCACACAGAGGACGATCTAACG 887
Query 781 GTAAGCCTGATGGAGAAATGCAAGCAATCGCAGCCGTTGATTCAAATGATTATAGAGAGC 840
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 888 GTTAGCCTGATGGAGAAATGCAAGCAATCGCAGCCATTGATTCAAATGATCATAGAGAGT 947
Query 841 ACAACAGACGACGAGGGAGTCCTGTTTGAGGCTCTGCATCTGAATGATGAGCTCCAACGC 900
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 948 ACAACAGACGACGAGGGAGTCCTGTTCGAGGCTCTGCATCTGAATGATGAGCTCCAACAA 1007
Query 901 GTTCTATCTAGTTACAAGAAGCCTGATGAAACCGAGAAGAAAGCGTCCATTGTGGAACAA 960
||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1008 GTTTTATCTAGTTACAAGAAGCCTGATGAAACCGAAAAGAAAGCCTCCATTGTGGAACAA 1067
Query 961 GAATCATCAGGAAGCAAAGAGGCTGGTCCGAAACCAACAGAAGAAGAAGAAGAACAACCT 1020
|||||||||||||||||||| |||||||||||||||||||| |||||||| || | |||
Sbjct 1068 GAATCATCAGGAAGCAAAGATACTGGTCCGAAACCAACAGAACAAGAAGAACAAGAGCCT 1127
Query 1021 GTAAAGAAAACGGGTGATGATGATGACACAAAACATTCAGAAGCATCAGGATCCTCCAAC 1080
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1128 GTAAAGAAAACGGGTGCTGATGATGACAAAAAACATTCAGAAGCATCAGGATCCTCCAAC 1187
Query 1081 AAAACCGTCAAAGAAGATAAGCAGGCCGTGAAAATAGAACTCGGGCTTTCTAGTGATGAA 1140
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1188 AAAACCGTCAAAGAAGAGAAGCAGGCCGTGAAAATAGAACTGGGGCTTTCGAGTGATGAA 1247
Query 1141 GATGAAAAATAA 1152
||||||||||||
Sbjct 1248 GATGAAAAATAA 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5