BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311711

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G06330.1 | Symbols:  | Heavy metal transport/detoxification ...   721    0.0  


> AT1G06330.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr1:1931671-1932266 REVERSE LENGTH=480
Length=480

 Score =  721 bits (390),  Expect = 0.0
 Identities = 423/439 (96%), Gaps = 2/439 (0%)
 Strand=Plus/Plus

Query  1    ATGAGAGTTCACATGGATTGTGTGGGGTGCGAAAGCAGAGTTAAAAATGCCCTTCAAAAG  60
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  43   ATGAGAGTTCACATGGATTGTGTGGGATGCGAAAGCAGAGTTAAAAATGCGCTTCAAAAG  102

Query  61   ATGAGAGGAGTGGATG-AGGTAGAAATCGACATGGTGCAGCAGAAAGTGACGGTGACTGG  119
            |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct  103  ATGAGAGGAGTGGATGCA-GTTGAAATCGACATGGTGCAGCAGAAAGTGACGGTGACTGG  161

Query  120  CTACGCCGATCAGAAGAAGGTTCTGAAGAAAGTGAGAAAAACCGGCCGGCGAGCTGAGCT  179
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  162  CTATGCCGATCAGAAGAAGGTTCTGAAGAAAGTGAGAAAAACCGGCAGGCGAGCTGAGCT  221

Query  180  ATGGCAGCTTCCTTATAACCCTGAGCACATGGGCGGAAGCAGCAGCAACGGGGGCTACTT  239
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  222  ATGGCAGCTTCCTTATAACCCTGACCACATGGGCGGAAGCAGCAGCAACGGCGGCTACTT  281

Query  240  CTACAACCCTCATGGCTGCAACGGCCCAATCAACCACGCCGCACCAGTCCCGACTTCATC  299
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  282  CTACAACCCTCAGGGCTGCAACGGCCCAATCAACCACGCCGCACCAGTCCCGACTTCGTC  341

Query  300  TTACAACTATTACAAGCATGGATACGACAGCAATGACTATTCGTCTTACCGCCACCACCC  359
            |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  342  TTACAATTATTACAAGCATGGCTACGATAGCAATGACTATTCGTCTTACCGCCACCACCC  401

Query  360  TGTTCATGCCTCTATCTTCAGCCACCAAACTGGTTCTAAGTTTAGTGACGAGAATCCTAA  419
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  402  TGTTCATGCCTCTATCTTCAGCCACCAAACTGGTTCTAAGTTTAGTGATGAGAATCCTAA  461

Query  420  CGCTTGTTCTATAATGTGA  438
            |||||||||||| ||||||
Sbjct  462  CGCTTGTTCTATCATGTGA  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5