BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311756
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06910.1 | Symbols: TRFL7 | TRF-like 7 | chr1:2120991-212374... 1781 0.0
> AT1G06910.1 | Symbols: TRFL7 | TRF-like 7 | chr1:2120991-2123748
FORWARD LENGTH=1528
Length=1528
Score = 1781 bits (964), Expect = 0.0
Identities = 1106/1174 (94%), Gaps = 11/1174 (1%)
Strand=Plus/Plus
Query 1 ATGGCACTGTCGCAGTGGAAGGAAGCTATACTCGAAGGGATTTTCATGGAGATTGAGGAT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 ATGGCACTCTCGCAGTGGAAGGAAGCTATACTCGAAGGGATTTTCATGGAGATTGAGGAT 168
Query 61 GGTGTTGTGGAAGAGAAGAATCTCGAGCGGTTAGAGAATCTAGTGGAGATTCTACACAAA 120
||| ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 169 GGTATTGTGGAAGAGAAGAATCTCGAGCGATTAGAGAATCTTGTGGAGATTTTACACAAA 228
Query 121 GAAGGTTCTAAAGTGCCCGAATCAGTCACGGAAGCTTATTGTAAAGTAGCTGTGGAGTGC 180
|||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 229 GAAGGTTCTAAAGTACCCAAATCAGTCACGGAAGCGTATTGTAAAGTAGCTGTGGAGTGC 288
Query 181 ACAGTGAAGTGTCTCGCTTATGAGAAAGATGCAAAAAAGGCTTATACTGAAGCAATCAGA 240
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 289 ACAGTGAAGTGTCTCGCTTATGAGAAAGATGCAAAAAAGGCTTACACCGAAGCAATCAAA 348
Query 241 TCGATATGGCTGGGTAGGATTATGCCTTTATGCGATAAGGTTAGTTGTTTGGTTACTCTT 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 ACGATATGGCTCGGTAGGATTATGCCTTTATGCGATAAGGTTAGTTGTTTGGTTACTCTT 408
Query 301 GACCTCTTGAAATGCTGTCGAAGATTATGGAAGGCCCACAATGACGACAAGGCTTGTAAG 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 409 GACCTCTTGAAATGCTGTCGAAGATTATGGAAGGCCCACACTGACGACAAGGCTTGTAAG 468
Query 361 ACACTCATGGATGAAGATACTAGAGACAAAGCTTTGGTTTCTTTGAGGAAGGTTGTTTTA 420
||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 469 ACACTGATGGATGAAGATACAAGAGACAAAGCTTTGGTTTGTTTGAGGAAGGTTGTTTTA 528
Query 421 GATTTGAATCCCATTCTTGTTTTAGAGAATC-CGAACATGGATGAATCAGAGGACATTGA 479
||||||||||||| ||||||||||||||||| | |||||||||||||| || || |||||
Sbjct 529 GATTTGAATCCCAATCTTGTTTTAGAGAATCTC-AACATGGATGAATCGGATGAGATTGA 587
Query 480 ATCTAGTGAAGAATCTCAAGAGACAGAGTCAATGGTTGAAGCAAGAGAGGGGGTGGTTAA 539
|||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 588 ATCTAGTGAAGAATCTGAAGAGACAGAATCAATGGTTGAAGCAAGAGAGGGCGTGGGTAA 647
Query 540 TCAGAACAGTCAGGCGTCTGAAGCAATGGAAGACGA--AC-AAGAGAGCCTCTTAGATAC 596
|||||||||||||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct 648 TCAGAACAGTCAGGCGTCTGAAGCTATGGAAGAAGACGACCAAGAGAGCCTCTTAGATAC 707
Query 597 AGAACTGGAGAGACCTATTTCTGGAGGGTCAAAAGCTGTATATGTACCCCGTCAATTCAA 656
|||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 708 TGAACTGGAAAGACCTACTTCTGGAGGGTCAAAAGCTGTATATGTACCCAGTCAATTCAA 767
Query 657 GCCCATTTCATCTGCAGTTGTTGACAGAGCGCTCAGAGAGCTTAGAGCTAGTAAAATCGA 716
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 768 TCCCATTCCATCTGCAGTTGTTGACAGAGCGCTCAGAAAGCTGAGAGCTAGTAAAATCGA 827
Query 717 GCTAATGAATGCTTTAGAAAAAGGACGACCTTCAAATTTAAACAATGAGAAGATTACAGA 776
||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 828 GCTAATGAAAGCTTTAGAAAAAGGAAGACCTTCAAATTTAAACAATGAGACGATTACAGA 887
Query 777 ACAAGAAAATGATGTTGCTAATCCTTCTGCAACAAACGCTTCACCAAGGCCTAGCTTGAT 836
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 888 ACAAGAAAACGATGTTGCTAATCCTTCTGCAACAAACGCTGCACCAAGGCCTAGCTTGAT 947
Query 837 GGAGCGACGTAGTACAGCACACACTTATGAATGGAAAGACTCCCTTGATGATTCAGATGG 896
||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 948 GGAGCCACGTAGCACAGCACACACTTATGAATGGAATGACTCCATTGATGATTCAGATGG 1007
Query 897 AGAAATGGGCGATGATGGTGTAAG-A--AA-A--TCAAAACGTAAAAGAATTGTCGTGTC 950
||||||||||||||| || ||| | || | ||||||||||||||||||||||||||
Sbjct 1008 AGAAATGGGCGATGACATTGAAAGGATTAATAAATCAAAACGTAAAAGAATTGTCGTGTC 1067
Query 951 TCCTTTGAAAAGAAACCGAGGTTTTGAAGGTGCTAGAAGGCCAAAAGTTCCTTGGAGTAC 1010
||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||
Sbjct 1068 TCCTTTGAAAAGAAACCGATGTTCAGAAGGTGCTAGAAGGCCAAAACTTCCTTGGAGTAC 1127
Query 1011 TGCAGAAACGCTGGCTGTACTGAAAGGCTATGAAAAGTATGGTGCAAACTGGAAGCGGAT 1070
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1128 TGCAGAAACGCTGGCCGTACTCAAAGGCTATGAAAAGTATGGTGCAAACTGGAAACGGAT 1187
Query 1071 CAAAGATGAGAATCCAATTCTAGTGCGCAGAACTAATGGTGATATTAAAGATAAATTTCG 1130
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CAAAGATGAGAATCCAGTTCTAGTGCGCAGAACTAATGGTGATATTAAAGATAAATTTCG 1247
Query 1131 AGTTGAGATGAGACGTGAAGAGCGCCATCATTGA 1164
|||||||||||||||||||||||||| |||||||
Sbjct 1248 AGTTGAGATGAGACGTGAAGAGCGCCGTCATTGA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5