BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311762
Length=2490
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06970.1 | Symbols: CHX14, ATCHX14 | cation/hydrogen exchang... 4039 0.0
> AT1G06970.1 | Symbols: CHX14, ATCHX14 | cation/hydrogen exchanger
14 | chr1:2138109-2140818 FORWARD LENGTH=2490
Length=2490
Score = 4039 bits (2187), Expect = 0.0
Identities = 2391/2492 (96%), Gaps = 4/2492 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAAGCTAGACCTGGAGGAGGTGAACTCGATGCAGAGAGGCAAAGTTCATGGGCCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAAAGCTAGACCTGGAGGAGGTGAACTCGATGCAGAGAGGCAAAGTTCATGGGCCA 60
Query 61 TTCTTGGTGGAAAACATGGTGTGCCAGAAAAACCACATGTTGACCTCAAAGGGTGTTTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTGGTGGAAAACATGGTGTGCCAGAAAAACCACATGTTGACCTCAAAGGGTGTTTTC 120
Query 121 TTGGGCAGTGACCCTCTCAAATACGCAATGCCACTTATGTTGCTACAAATGTCCGTCATC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTGGGCAGTGACCCTCTCAAATACGCAATGCCACTTATGTTGCTGCAAATGTCCGTCATC 180
Query 181 ATCATCACCTCAAGGCTTCTCTACCGCCTCCTCAAGCCCTTGAAGCAAGGCATGATCTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCATCACCTCAAGGCTTCTCTACCGCCTCCTCAAGCCCTTGAAGCAAGGCATGATCTCT 240
Query 241 GCCCAAGTCTTGGCTGGGATTATCCTAGGACCGTCTCTCTTTGGCCAAAGCAGCGCATAC 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCCAAGTCTTGGCTGGGATCATCCTAGGACCGTCTCTCTTTGGCCAAAGCAGCGCATAT 300
Query 301 ATGCAGATGTTCCTTCCCATAAGCGGCAAAATCACTTTACAAACTCTCTCAAACCTCGGG 360
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ATGCAGATGTTCCTCCCCATAAGCGGCAAAATCACTTTACAAACGCTCTCAAACCTCGGG 360
Query 361 TTCTTCATCCATCTATTCTTACTTGGACTAAGAATCGACGCTAGCATCATTCGTAAAGCT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTTCATCCATCTCTTCTTACTTGGACTAAGAATCGACGCTAGCATCATTCGTAAAGCT 420
Query 421 GGTTCCAAAGCCATACTCATTGGTACAGCTTCCTACGCCTTACCATTCTCCCTCGGTAAC 480
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 421 GGTTCCAAAGCCATACTCATTGGCACAGCTTCCTACGCCTTGCCATTCTCCCTCGGTAAC 480
Query 481 CTCACTGTCCTCTTTTTGAAAAACACTTACAAGCTTCCGCCAGACGTTGTCCACTGCATC 540
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 481 CTCACTGTCCTCTTTTTGAAAAACACTTACAACCTCCCGCCAGACGTTGTCCACTGCATA 540
Query 541 AGCACAGTGATCTCCCTCAATGCAATGACCTCATTCCCGGTCACCACAACCGTCTTAGCT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCACAGTGATCTCCCTCAATGCAATGACCTCATTCCCGGTCACCACAACCGTCTTAGCT 600
Query 601 GAGCTTAACATCCTTAACTCTGATCTTGGACGGTTAGCCACAAACTGCTCCATTGTCTGC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGCTTAACATCCTTAACTCTGATCTTGGACGGTTAGCCACAAACTGCTCCATTGTCTGT 660
Query 661 GAGGCCTTTAGCTGGATTGTAGCACTTGTTTTCAGAATGTTCTTGCGGGAAGGGACAGTA 720
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| ||
Sbjct 661 GAGGCCTTTAGCTGGATAGTTGCACTTGTTTTCAGAATGTTCTTGCGGGATGGGACACTA 720
Query 721 GCTAGCCTTTGGTCTTTCGGTTGGGTGGCTGTTCTTATCCTCGTGATTTTCTTCGTCTGC 780
|||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 721 GCTAGCGTTTGGTCTTTCGTTTGGGTGACTGCTCTTATCCTCGTGATTTTCTTCGTCTGC 780
Query 781 AGACCAG-TCATCATCTGGTTGACAGATAGAAGAAGCATTTCGATCGATAAATCAGGCGA 839
||||| | | ||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 781 AGACCGGCT-ATCATCTGGTTGACAGAGAGAAGAAGCATTTCGATCGATAAAGCAGGCGA 839
Query 840 GATCCCATTCTTCCCGATCATAATGGTCTTGCTGACGATAAGCTTGACCTCCGAAGTTCT 899
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 GATCCCATTCTTCCCGATCATAATGGTCCTGCTGACGATAAGCTTGACCTCCGAAGTTCT 899
Query 900 CGGGGTCCATGCGGCGTTTGGAGCGTTCTGGCTCGGAGTATCGCTCCCGGATGGACCTCC 959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 CGGGGTCCATGCGGCGTTTGGAGCGTTCTGGCTCGGAGTATCACTCCCGGATGGACCTCC 959
Query 960 GTTAGGGACCGGGCTCACAACAAAGCTCGATATGTTTGCAACAAGCCTTATGCTCCCTTG 1019
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 960 TTTAGGGACCGGGCTCACCACAAAGCTCGAAATGTTTGCAACGAGCCTTATGCTCCCTTG 1019
Query 1020 TTTCATCGCCATTAGTGGATTGCAGACCAATTTCTTCATTATTGGAGAGAGCCATGTGAA 1079
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1020 TTTCATCTCCATTAGTGGATTGCAGACCAATTTCTTCATTATCGGAGAAAGCCACGTGAA 1079
Query 1080 GATCATTGAGGCCGTGATACTCATCACCTACGGCTGCAAATTCCTAGGAACAGCAGCCGC 1139
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 GATCATTGAGGCCGTTATACTCATCACCTACGGCTGCAAATTCCTAGGAACAGCAGCAGC 1139
Query 1140 TTCCGCTTATTGCAACATACAAATCGGAGACGCATTTTCTTTGGCCCTCTTGATGTGTTG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCCGCTTATTGCAACATACAAATCGGAGACGCATTTTCTTTGGCCCTCTTGATGTGTTG 1199
Query 1200 CCAAGGAGTCATTGAGATTTATACATGCGTCATGTGGAAAGACGAAAAGGTTCTAAACAC 1259
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 CCAAGGAGTCATTGAGATTTACACATGTGTCATGTGGAAAGACGAAAAGGTTCTAAACAC 1259
Query 1260 CGAATGCTTCAATCTCCTTATCATCACGCTCTTGCTCGTGACTGGGATATCGCGGTTCCT 1319
||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1260 AGAATGCTTCAATCTCCTTATCATCACGCTCTTGCTCGTGACAGGTATTTCGCGGTTCCT 1319
Query 1320 CGTAGTTTGCCTCTATGACCCATCGAAACGCTACAGAAGCAAGAGTAAGCGAACGATCCT 1379
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1320 CGTAGTTTGCCTCTATGACCCGTCTAAACGCTACAGAAGCAAGAGTAAGCGAACGATCCT 1379
Query 1380 CAATACGAGACAACGAAACCTTCAGTTCCGGCTCCTACTCTGCGTCTACAACGTCGAAAA 1439
| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1380 CGATACGAGACAACGGAACCTTCAGTTCCGGCTCCTGCTCTGTGTCTACAACGTTGAAAA 1439
Query 1440 CGTACCTTCCATGGTTAATCTTCTAGAAGCTTCTTACCCGAGTAGGTTCAGCCCGATCTC 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGTACCTTCCATGGTTAATCTTCTAGAAGCTTCTTACCCGAGTAGGTTCAGCCCGATCTC 1499
Query 1500 TGTCTTCACACTCCACCTCGTCGAGCTAAAAGGCCGAGCCCACGCGGTGCTTGTACCGCA 1559
|||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| || |||||
Sbjct 1500 TGTCTTCACACTCCACCTTGTCGAGCTTAAAGGTCGAGCGCACGCCGTGCTCGTGCCGCA 1559
Query 1560 TCACCAGATGAACAAACTCGATCCCAACACAGTTCAATCCACTCACATCGTCAACGGTTT 1619
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TCATCAGATGAACAAACTCGATCCCAACACAGTTCAATCCACTCACATCGTCAACGGTTT 1619
Query 1620 CCAACGATTCGAACAACAGAACCAAGGAACCCTAATGGCTCAGCATTTCACAGCAGCAGC 1679
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1620 CCAACGATTCGAACAGCAGAACCAAGGAACCCTAATGGCTCAGCATTTCACAGCTGCAGC 1679
Query 1680 TCCATTCTCTAGCATCAACGATGACATTTGCACTCTCGCCCTCGACAAGAAAGCGACGCT 1739
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TCCATTCTCCAGCATCAACGATGACATTTGCACTCTCGCCCTCGACAAGAAAGCGACGCT 1739
Query 1740 CATCGTCATCCCGTTTC-ATAAACAGTACGCGATAGACGGGACGGTAGACAACGTGAACC 1798
|||||||||||| |||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1740 CATCGTCATCCC-TTTCCACAAACAGTACGCGATAGACGGGACGGTAGACCACGTGAACC 1798
Query 1799 CATCAATCCGTAACATAAACCTTAATGTGCTAGAAAAGGCACCTTGTTCGGTTGGAATAT 1858
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1799 CATCAATCCGTAACATAAACCTTAACGTGCTAGAAAAGGCACCTTGTTCTGTCGGAATAT 1858
Query 1859 TCATCGATCGAGGAGAAACAGAAGGCCGCCGCTCTGTCCTCATGAGCTACACATGGCGAA 1918
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1859 TCATCGATCGAGGAGAAACAGAAGGCCGCCGCTCGGTCCTCATGAGCTACACATGGCGAA 1918
Query 1919 ACGTCGCAGTGATCTTCATAGAAGGCCGAGACGACGCAGAAGCCCTAGCTTTCTCCATGA 1978
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1919 ACGTCGCAGTGATCTTCATCGAAGGCCGAGATGACGCAGAAGCCCTAGCTTTCTCCATGA 1978
Query 1979 GAATCGCAGAGCACCCAGAAGTAAGCGTCACGATGATCCATTTCCGCCACAAGAGCTCCC 2038
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1979 GAATCGCAGAGCACCCGGAAGTAAGCGTCACGATGATCCATTTCCGCCATAAGAGCTCCC 2038
Query 2039 TCCAACAAAACCACGCAATAGATACGGAATCTGAATTCTCAGAATCTTACCTCATAAACG 2098
|||| || ||||||| | ||||| |||||| ||||| |||| || ||||| |||||||
Sbjct 2039 TCCAGCAGAACCACGTAGTAGATGTGGAATCCGAATTAGCAGAGTCCTACCTTATAAACG 2098
Query 2099 ATTTCAAGAATTTCGCAATGAACAAACCGAAAATCAGTTACAGAGAAGAGATAGTGAGAG 2158
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2099 ATTTCAAGAATTTCGCAATGAGCAAACCGAAAATCAGTTACAGAGAAGAGATAGTGAGAG 2158
Query 2159 ATGGCGTGGAAACCACGCAAGTGATTAGTTCACTAGGGGATTCATACGATCTGGTGGTTG 2218
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2159 ATGGCGTGGAAACCACGCAAGTGATTAGTTCACTAGGGGATTCATTCGATCTGGTGGTTG 2218
Query 2219 TGGGTCGTGACCATGACCTTGACTCGTCGGTATTGTATGGACTGACAGACTGGAGCGAGT 2278
|||||||||||||||||||||| |||||||| || || ||||| ||||||||||||||||
Sbjct 2219 TGGGTCGTGACCATGACCTTGAGTCGTCGGTGTTATACGGACTTACAGACTGGAGCGAGT 2278
Query 2279 GTCCTGAGCTAGGTGTGATCGGAGACATGTTTGCGTCGTCGGATTTTCATTTCTCGGTGC 2338
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 GCCCTGAGCTAGGTGTGATCGGAGACATGTTTGCGTCGTCGGATTTTCATTTCTCGGTGC 2338
Query 2339 TAGTGATTCATCAACAAGAAGGAGATTCTCTAGCGATGGATAATAGCTATAAATTGCCAG 2398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 TAGTGATTCATCAACAAGAAGGAGATTCTCTAGCGATGGATAATAGCTATAAATTGCCAG 2398
Query 2399 TTTCGCCTCCTAGGGTTGGGGATCCAAGAGTGCACCCACGTTTCTCTGTTGAAGACGGAT 2458
||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 2399 CTTCACCTCATAGGGTTGGGGATCCAAGAGTGCACCCTCGTTTCTCTGTTGAAGAAGGCT 2458
Query 2459 TTACTTCTGTTGATCTTCACAGCAACCGTTAA 2490
||||||||||||||||||||||||||||||||
Sbjct 2459 TTACTTCTGTTGATCTTCACAGCAACCGTTAA 2490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123561180609
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5