BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311764
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06990.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1640 0.0
> AT1G06990.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:2148387-2150152 FORWARD LENGTH=1232
Length=1232
Score = 1640 bits (888), Expect = 0.0
Identities = 1019/1084 (94%), Gaps = 2/1084 (0%)
Strand=Plus/Plus
Query 1 ATGTTGATCCATGTAATTATATTCATGATCATAACCACAATGCTAA-TCTCGACGACATG 59
||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 7 ATGTTGATCCATGTAATTATATTCATGATCATAACGACAATGC-AATTCTCGACGACATG 65
Query 60 CCATGCAAATGTGATCAACGTGACCAACATTAACGTATCAATGTTCCCGGCGATTCTTGT 119
||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 66 CCATGCATATGTGATTAACGTGACCAACGTTAACGTATCAATGTTCCCGGCTATTCTTGT 125
Query 120 GTTTGGGGATTCCACAATCGATACCGGCAACAACAACTACATCAAAACCTACATCCGGGC 179
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATTCGGGGATTCAACAATCGATACCGGCAACAACAACTACATCAAAACCTACATCCGGGC 185
Query 180 TAATTTCCCTCCTTACGGCTGCAATTTCCCCGGCCACAACGCTACCGTAAGATTCTCCAA 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 186 TAATTTCCCTCCTTACGGCTGCAATTTCCCCGGCCACAACGCTACCGGAAGATTCTCTAA 245
Query 240 CGGTAAACTCATTCCGGACTTCATAGCATCGCTTATGGGAATCAAAGACACCGTTCCTCC 299
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 246 CGGTAAACTTATTCCGGACTTCATAGCATCTCTTATGGGAATCAAAGACACCGTTCCTCC 305
Query 300 TTTCCTCGACCCTCATTTGTCGGATTCCGATATCCTCACCGGGGTGTGCTTTGCCTCGGC 359
|||||| |||||||| ||||| |||||||||||| ||||||| ||||||||||| |||||
Sbjct 306 TTTCCTAGACCCTCACTTGTCTGATTCCGATATCATCACCGGAGTGTGCTTTGCTTCGGC 365
Query 360 TGGTTCGGGTTACGACAACCTCACAGATCTAGCAACTTCATCTCTATCCGTCGCTAAACA 419
|||||| |||||||||||||||||||||| |||||||||| |||||||||| | ||||||
Sbjct 366 TGGTTCCGGTTACGACAACCTCACAGATCGAGCAACTTCAACTCTATCCGTTGATAAACA 425
Query 420 GGCGGATATGCTCAGAAGTTACGTGGAGAGGTTGAGCGGGATCGTAGGGGAAGAGAAAGC 479
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 426 GGCGGATATGCTCAGAAGTTACGTGGAGAGGTTGAGCCAGATCGTCGGGGACGAGAAAGC 485
Query 480 TGCCACGATAGTCAGCGAGGCTTTGGTGATTGTAAGCTCTGGAACTAACGATTTCAATCT 539
||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 486 GGCCTCGATAGTCAGCGAGGCTCTGGTGATTGTAAGCTCCGGAACTAACGATTTCAATCT 545
Query 540 AAATCTCTATGATACTCCTTCTCCTCGCCACAAGCTCGGCGTTGATGGCTATCAAAGTTT 599
||||||||| ||||||||||||| ||| || ||||| |||||||||||||||||||| ||
Sbjct 546 AAATCTCTACGATACTCCTTCTCGTCGTCAGAAGCTTGGCGTTGATGGCTATCAAAGCTT 605
Query 600 CATTCTTTCGAGTGTACACAACTTTGTTCAAGAACTATATGACATTGGATGCCGTAAAAT 659
|||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 606 CATTCTCTCGAATGTACACAACTTCGTTCAAGAACTATATGACATTGGATGCCGTAAAAT 665
Query 660 AATGGTGTTAGGACTACCACCGGTCGGGTGTTTACCGATTCAGATGACGATGGCTATGCA 719
||||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 666 AATGGTGTTGGGTCTACCGCCGGTCGGGTGTTTACCAATTCAGATGACAATGGCTATGCA 725
Query 720 AAAGCAAAACAAGAGAAGATGCATCGACAAACAAAATTCAGATTCACAAGAGTTTAACCA 779
|||||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 726 AAAGCAGAACGAGAGACGATGCATCGACAAACAAAACTCAGATTCACAAGAGTTTAACCA 785
Query 780 GAAGCTAGAAAAGTCCTTGACGGATATGCAATCCAATCTCACTGGCAGTGTCATCTTCTA 839
||||||| |||| ||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 786 GAAGCTAAAAAACTCCTTGACGGAGATGCAATCCAACCTCACTGGAAGTGTCATCTTCTA 845
Query 840 CGGCGATATCTACGGAGCATTGTTCGACATGGCTACTAATCCTCAAAGATACGGGTTAAA 899
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 846 CGGCGATATCTACGGAGCATTGTTCGACATGGCCACTAATCCTCAAAGATACGGGTTAAA 905
Query 900 GGAGACGACGAGAGGATGTTGCGGGACTGGAGAAATGGAGTTAGCGTACTTGTGCAATGC 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 906 GGAGACGACGAGAGGATGTTGCGGGACTGGAGAAATAGAGTTAGCGTACTTGTGCAATGC 965
Query 960 TTTAACTCGGACTTGTCCTGACCCTAACCAATTCCTTTTCTGGGACGACATTCATCCTTC 1019
||||||||||| ||||||| |||||||||| | ||||||||||||||| |||||||||||
Sbjct 966 TTTAACTCGGATTTGTCCTAACCCTAACCAGTACCTTTTCTGGGACGATATTCATCCTTC 1025
Query 1020 CCAAGTTGCTTACATAGTCATCAGTCTCAGTCTTGTTGAACAAATTCTCCACGTACTCTC 1079
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1026 CCAAATTGCTTACATAGTCATCAGTCTCAGTCTTGTTGAACAAATTTTCCACGTACTCTC 1085
Query 1080 TTGA 1083
||||
Sbjct 1086 TTGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5