BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311783
Length=2934
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07200.2 | Symbols: | Double Clp-N motif-containing P-loop ... 4471 0.0
> AT1G07200.2 | Symbols: | Double Clp-N motif-containing P-loop
nucleoside triphosphate hydrolases superfamily protein | chr1:2208719-2212546
REVERSE LENGTH=3484
Length=3484
Score = 4471 bits (2421), Expect = 0.0
Identities = 2767/2937 (94%), Gaps = 11/2937 (0%)
Strand=Plus/Plus
Query 1 ATGCCGACGCCGGTGACTACGGCGAGAGAATGCTTGACGGAGGAAGCTGCTCGTGCTCTC 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 231 ATGCCGACGCCGGTGACTACGGCGAGAGAATGCTTGACGGAAGAAGCTGCTCGTGCCCTC 290
Query 61 GACGATGCTGTTGCTGTGGCTCGTCGGAGAAGCCACGCTCAGACGACGTCTCTTCATGCA 120
||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 291 GACGATGCTGTTGTTGTAGCTCGTCGGAGAAGCCACGCGCAGACGACGTCTCTTCATGCA 350
Query 121 GTTTCTGCTCTTTTAGCTATGCCGTCGTCGATTCTCCGGGAAGTTTGCGTCTCACGCGCC 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 351 GTTTCTGCTCTTTTAGCTATGCCGTCGTCGATTCTCCGTGAAGTTTGCGTCTCACGCGCC 410
Query 181 GCTAGGAGTACTCCTTACTCGTCGCGACTTCAATTCCGAGCTCTTGAGCTTTGCGTCGGC 240
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 GCTAGGAGTGTTCCTTACTCGTCGCGACTTCAATTCCGAGCTCTTGAGCTCTGCGTCGGT 470
Query 241 GTATCTCTCGACAGGCTTCCGTCGTCGAAGTCTCCGGCGACTGAAGAAGATCCACCGGTT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 471 GTATCTCTCGACAGGCTTCCGTCGTCGAAGTCTCCGGCGACGGAAGAAGATCCACCGGTT 530
Query 301 TCGAATTCGCTCATGGCGGCGATCAAACGGTCTCAGGCGAATCAGAGACGGCATCCGGAG 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 531 TCGAATTCGCTCATGGCGGCGATCAAACGGTCTCAGGCGAACCAGAGACGGCATCCGGAG 590
Query 361 ACGTATCATCTTCAGCAGATCCACGCCAGTAACAACGGCGGCGGCGGATGCCAAACGACG 420
||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||
Sbjct 591 TCGTATCATCTTCAGCAGATCCACGCTAGTAACAACGGCGGGGGAGGATGCCAGACGACG 650
Query 421 GTTCTGAAAGTCGAATTGAAGTATTTCATACTATCGATCCTCGACGATCCGATTGTGAAT 480
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 651 GTTTTGAAAGTCGAATTGAAGTATTTCATACTCTCGATCCTTGACGATCCGATTGTGAAT 710
Query 481 CGGGTATTCGGCGAAGCTGGGTTTCGTAGCTCGGATATTAAGCTCGACGTGCTTCACCCT 540
||||||||||| |||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 711 CGGGTATTCGGAGAAGCTGGGTTTCGGAGCTCCGAAATTAAGCTCGATGTGCTTCACCCT 770
Query 541 CCGGTAACGCAA-TTCTCTTCCCGTTTCTCTCGAGGTCGTTGTCCGCCTCTCTTCCTCTG 599
|||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 771 CCGGTAACACAACTT-TCTTCCCGTTTCTCTAGAGGTCGTTGTCCGCCTCTCTTCCTCTG 829
Query 600 TAATCTTCCAAACTCAGATCCGAATCGTGAGTTCCCGTTTTGTGGGAGCAGTGGCTTCGA 659
||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 830 TAATCTTCCCAACTCAGATCCGAATCGTGAGTTCCCGTTTAGTGGGAGCAGTGGTTTCGA 889
Query 660 TGAAAATTCCCGGAGAATCGGAGATGTTTTAGGCCGGAAAGATAAGAAGAACCCTCTGCT 719
||||||||||||||| || ||||| || |||||| |||||||||||||||||||||||||
Sbjct 890 TGAAAATTCCCGGAGGATTGGAGAAGTATTAGGCAGGAAAGATAAGAAGAACCCTCTGCT 949
Query 720 TGTTGGTAATTGCGCTAACGAAGCTCTTAAAACGTTCATGGATTCGATCAACAGTGGGAA 779
| ||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 950 TATTGGTAACTGTGCTAATGAAGCTCTTAAAACGTTCACGGATTCGATCAACAGTGGGAA 1009
Query 780 GTTAGGGTTTCTTCCGATGGATACTAGCGGATTAAGCTTGATTAGCATAGAGAAGGAGAT 839
|||||||||||||| |||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1010 GTTAGGGTTTCTTCAGATGGATATTAGCGGATTAAGCTTGATTAGTATCGAGAAGGAGAT 1069
Query 840 TAGTGAAATTTTAGCCGATGGATCGAAAAACGAAGAGGAGGTTCGAGTGAAAGTGGATGA 899
|||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 1070 TAGTGAGATTTTAGCCGATGGATCGAAAAACGAAGAAGAGATTCGAATGAAAGTGGATGA 1129
Query 900 CCTAGGAAGAATTGTAGAGCAAAATGGCTCGAAATCGGGGATAGTGCTTAATCTGGGAGA 959
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1130 CCTAGGAAGAACTGTAGAGCAAAGTGGCTCGAAATCGGGGATAGTGCTTAATCTGGGAGA 1189
Query 960 GCTCAAGGTTTTGACCAGTGAAGCTAATGCTGCTCTTGAGAATTTGGTGTCGAAGCTTTC 1019
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 1190 GCTCAAGGTTTTGACCAGTGAAGCCAATGCGGCTCTTGAGATTTTGGTGTCGAAGCTTTC 1249
Query 1020 GGATTTGCTGAAACATCCAAGTAAGA-AACTTTGGTTCATCGGATGTGTATCGAGCAACG 1078
|||||||||||||||| |||||| | |||||| ||||||||||||||||||||| || |
Sbjct 1250 GGATTTGCTGAAACATGAAAGTAA-ACAACTTTCGTTCATCGGATGTGTATCGAGTAATG 1308
Query 1079 AGACTTACACGAAGCTTATCGATCGGTTCCCTACAATCGAGAAGGATTGGGACCTTCATG 1138
||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 1309 AGACTTACACGAAGCTTATTGATCGGTTTCCTACTATAGAGAAGGATTGGGACCTTCATG 1368
Query 1139 TTCTTCCAATCACAGCCTCTACTAAACCTTCGAGTCAAGGGGTTTATCCAAAATCAAGCT 1198
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1369 TTCTTCCAATCACAGCCTCTACTAAACCTTCGACTCAAGGGGTTTATCCCAAATCGAGCT 1428
Query 1199 TGATGGGATCCTTTGTTCCTTTTGGAGGCTTCTTCTCGTCAACATCAGATTTCAGAGTAC 1258
||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||| |
Sbjct 1429 TGATGGGATCCTTTGTTCCCTTTGGAGGGTTCTTCTCATCAACATCAAATTTCAGAGTTC 1488
Query 1259 CGTTGAGTAGCACAGTGAATCAGACGCTCTCTAGATGCCACCTCTGCAACGAGAAGTATT 1318
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CATTGAGTAGCACAGTGAATCAGACGCTCTCTAGATGCCACCTCTGCAACGAGAAGTATT 1548
Query 1319 TGCAAGAAGTAGCCGCTGTTCTCAAGGCCAGTTCGAGTCTTTCTCTGGCTGACCAATGTT 1378
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1549 TGCAAGAAGTAGCCGCTGTTCTCAAGGCCGGTTCGAGTCTTTCTCTGGCTGACAAATGTT 1608
Query 1379 CCGAGAAGTT-GCCCCCTTGGCTTCGGGCTGTAGAGACCAAAGAAGACAAGGGAACAACA 1437
|||||||||| ||||| | |||| |||||| | |||||||||||||||||||||| ||||
Sbjct 1609 CCGAGAAGTTAGCCCCAT-GGCTACGGGCTATTGAGACCAAAGAAGACAAGGGAATAACA 1667
Query 1438 GGCAGCAGTAAGGCTTTAGATGACGCTAACACATCAGCCTCGCAAACCGCAGCTCTGCAG 1497
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1668 GGCAGCAGTAAGGCTTTAGATGACGCTAATACATCAGCCTCGCAAACCGCTGCTCTACAG 1727
Query 1498 AAGAAATGGGACAACATATGCCAAAGTATCCATCAAACTCCAGCAATTCCTAAACTCGGT 1557
||||||||||||||||||||||||||||||||||| ||||| || |||||||||| |||
Sbjct 1728 AAGAAATGGGACAACATATGCCAAAGTATCCATCACACTCCGGCGTTTCCTAAACTTGGT 1787
Query 1558 TTTCAGTCAGTGAGTTCGCAGTTCCCAGTTCAGACAGAGAAGAGTGTGAGAACTCCTACA 1617
|||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1788 TTTCAGTCGGTGAGTCCGCAGTTCCCAGTTCAGACTGAGAAGAGTGTGAGAACTCCTACA 1847
Query 1618 AGCTTTTTGGAGACGCCTAAACTGCTGAATCCGCCAATCTCAAAGCCAAAACCTATGGAG 1677
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 AGCTATTTGGAGACGCCTAAACTGCTGAATCCGCCAATCTCAAAGCCAAAACCTATGGAG 1907
Query 1678 AATCTCACCACATCAGTGACTAACCGCACAGTGAGTTCGCCTTTGAGCTGTGTTACGACA 1737
|||| || |||| |||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1908 GATCTTACGGCATCGGTGACTAACCGCACAGTGAGTTTGCCTTTGAGCTGTGTTACTACA 1967
Query 1738 GATTTTGGGTTGGGAGTAATCTATGCATCAAAAAACCAGGAATCAAAAACAGCGAGGGAG 1797
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1968 GATTTTGGGTTGGGAGTAATCTATGCATCCAAAAACCAGGAATCAAAAACAACGAGGGAG 2027
Query 1798 AAACCGCTGCTGGTGACTCTAAACTCTTCTTTAGAACATACATATCAGAAAGATTTCAAG 1857
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2028 AAACCGATGCTGGTGACTCTAAACTCTTCTTTAGAACATACATATCAGAAAGATTTCAAG 2087
Query 1858 TCTCTCAGAGAATTACTCTCTCGTAAAGTTGCCTGGCAGACGGAAGCTGTGAATGCCATA 1917
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2088 TCTCTCAGAGAAATACTCTCTCGTAAAGTTGCCTGGCAGACCGAAGCTGTAAATGCCATA 2147
Query 1918 AGCCAAATTATCTGCGGGTGCAAAACCGACTCCACGAGAAGAAACCAAGCAAGCGGAATT 1977
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2148 AGCCAAATTATCTGCGGATGCAAAACCGACTCCACGCGAAGAAACCAAGCAAGCGGAATT 2207
Query 1978 TGGCTGGCTCTTCTTGGACCCGATAAAGTCGGGAAGAAGAAAGTGGCAATGGCTCTTTCT 2037
||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 2208 TGGCTGGCTCTTCTTGGACCCGATAAAGTGGGGAAGAAGAAAGTGGCGATGACTCTTTCT 2267
Query 2038 GAAGTCTTCTTTGGTGGTCAGGTCAATTGCATATGTGTAGATTTTGGGGCAGAGCATTGT 2097
|||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct 2268 GAAGTCTTCTTTGGTGGTAAAGTCAATTACATATGTGTAGATTTTGGGGCAGAGCATTGT 2327
Query 2098 TTTCTTGATGACAAATTTAGAGGCAAAACAGTGGTTGATTACATAACCGGTGAGTTATCA 2157
| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 2328 TCCCTTGATGACAAATTCAGAGGCAAAACAGTGGTGGATTACGTAACCGGTGAGTTATCT 2387
Query 2158 AGGAAACCACACTCTGTTGTTTTATTAGAAAACGTGGAAAAAGCTGATTTCCCGGATCAG 2217
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 2388 AGGAAACCACACTCTGTTGTTTTACTCGAAAACGTGGAAAAAGCTGAGTTCCCGGATCAG 2447
Query 2218 ATGAGATTGTCTGAAGCTGTGAGTACTGGGAAAATTCGTGATTCGCATGGAAGAGTGATC 2277
|||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 2448 ATGAGATTGTCTGAAGCTGTGAGTACGGGGAAAATCCGTGATTTGCATGGAAGAGTGATT 2507
Query 2278 AGTATGAAAAATGTGATTGTTGTTGCGACGTCTGGGATTGCCAAGGATAATGCTACTGAC 2337
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2508 AGTATGAAAAATGTGATTGTTGTTGTGACGTCTGGGATTGCCAAGGATAATGCCACTGAC 2567
Query 2338 CATGTTACTAAACCTGTGAAGTTTCCTGAGGATCAAGTTCTCAGTGGGAGAAGCTGGAAA 2397
||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 2568 CATGTTATTAAACCTGTGAAGTTTCCTGAGGAGCAAGTTCTCAGCGCGAGAAGCTGGAAA 2627
Query 2398 CTGCAGATAAAGCTAGGAGATGCTACTAAAATTGGGGTAAATAAGAGAAAACATGAGCTA 2457
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2628 CTGCAGATAAAGCTAGGAGATGCTACTAAATTTGGGGTAAATAAGAGAAAATATGAGCTA 2687
Query 2458 GAAACAGAGCAACGTGCAGTGAAGGTGCAACGTTCATATCTGGATCTGAACCTTCCAGTG 2517
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2688 GAAACAGCGCAACGTGCAGTGAAGGTGCAACGTTCATATCTGGATCTGAATCTTCCAGTG 2747
Query 2518 AATGAAACAGAAGTTAGCC-TCGATCATGAGACAGAAGACAGTAACACTTGGTTCGAAGA 2576
|||||||||||| |||||| | ||||||||| |||| ||||| || |||||||||| ||
Sbjct 2748 AATGAAACAGAATTTAGCCCT-GATCATGAGGCAGAGGACAGGGACGCTTGGTTCGATGA 2806
Query 2577 TTTCATTGAACAAGTAGATGGAAAAGTGACGTTCAAACCGGTTGATTTCGATGGGTTAGC 2636
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2807 ATTCATTGAAAAAGTAGATGGAAAAGTGACGTTCAAACCGGTTGATTTCGATGAGTTAGC 2866
Query 2637 CAAGAACATTCAAGAGAAGATTGGTTTGCATTTTGAGCGGTGCTTTGGATCGGAAACACA 2696
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2867 CAAGAACATTCAAGAGAAGATTGGTTCACATTTTGAGCGGTGCTTTGGATCCGAAACACA 2926
Query 2697 TCTAGAGCTTGATAAAGAAGTGATCATTCAGATTCTGGCGGCTTCATGGTCATCATTATC 2756
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2927 TCTAGAACTTGATAAAGAAGTGATCCTTCAGATTCTGGCGGCTTCATGGTCATCATTATC 2986
Query 2757 ATCGGGCGAAGAAGAAGGGAAAACA---GTTGATAAGTGGATGCAAACCGTTCTTGCTCC 2813
|||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||
Sbjct 2987 ATCGGGCGAAGAAGAAGGGAGAACAATAGTTGATCAGTGGATGCAAACAGTTCTTGCTCG 3046
Query 2814 AAGCTTTGCTGAAGCGAAACAGAAGTACGGTTTGAATCCCATGTTGGCCGTGAAGCTGGT 2873
||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 3047 AAGCTTTGCTGAAGCAAAACAGAAGTACGGTTCGAATCCCATGTTGGGCGTGAAGCTGGT 3106
Query 2874 TGCTTCTTCTAGCGGTTTAGCTTCCGGAATAGAGTTGCCGGCGAAGGTGGATGTGAT 2930
||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct 3107 TGCTTCTTCTAGCGGCTTAGCTTCCGGAGTAGAATTGCCGGCGAAGGTGGATGTGAT 3163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145835303301
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5