BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311790
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07270.1 | Symbols: | Cell division control, Cdc6 | chr1:22... 2130 0.0
AT2G29680.1 | Symbols: CDC6, ATCDC6 | cell division control 6 |... 678 0.0
> AT1G07270.1 | Symbols: | Cell division control, Cdc6 | chr1:2229757-2232897
REVERSE LENGTH=1518
Length=1518
Score = 2130 bits (1153), Expect = 0.0
Identities = 1417/1540 (92%), Gaps = 35/1540 (2%)
Strand=Plus/Plus
Query 1 ATGCCTACCAACGCCGCCGGGGCGAGTTTATCTTCTTACAAGTATTTTGTAACCACCGG- 59
||||||||||| ||||||| | ||||| |||||||||||| || ||||| ||| |||
Sbjct 1 ATGCCTACCAA---CGCCGGGACAAGTTTGTCTTCTTACAAGCATATTGTAGCCATCGGA 57
Query 60 --GACGGTGAAATTCGAAAGCCTTGAATCTGCTGCGTATGAGATTCCTCGGAAGAGAAAG 117
||||||||||| ||| |||||||||||||| || ||||||||||| ||||||||||||
Sbjct 58 ACGACGGTGAAATCCGAGAGCCTTGAATCTGCCGCATATGAGATTCCGCGGAAGAGAAAG 117
Query 118 ATGAGATCGGATTCAGCGGCCGCGGTGAATCTTATGTCTGGAAATTCAATCTCCT-CGCC 176
||||||||||||||||| | || | | ||||||| |||||| ||| || ||||
Sbjct 118 ATGAGATCGGATTCAGC-G--GC-G-G-------TGTCTGGTAATTCAGTCT-CTACGCC 164
Query 177 GAAGAAATTGAAATCTCATCGACCTTGTTTTGTTTCTAATCCCAGAATATCAGTAAAGGA 236
|||||||||||||||||||| ||| ||| |||| | |||||| |||| |||| ||||||
Sbjct 165 GAAGAAATTGAAATCTCATCTACCAAGTTCTGTTCCCAATCCCGGAATGTCAGAAAAGGA 224
Query 237 AGTTATGGAA-ATTTTGA-GAGATCCAGTGA-ATTTGGTAGTGCA-GAAG-T-TATCTGA 290
|||| ||||| ||| | | || || | ||| || | |||| | | | | |||||
Sbjct 225 AGTTGTGGAAGATTCTAATGAAATTC--TGAGATAT-CCAGTGAATTTGGCTGTGTCTGA 281
Query 291 TTGTTTAGGCTCTAAATCTAACTGGAATCCTAGAGATGAGGAGCAAATGAGAGCTGTGAA 350
|||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 282 TTGTTTAGGCACTAAATCTAAGTGGAGTCCTAGAGATGAAGAGCAAATGAGAGCTGTGAA 341
Query 351 AGAGGCATTGCACGTGTCCAAACCACCATCAACAATTGTTTGCCGCGAGGACGAACACAT 410
|||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||
Sbjct 342 AGAGGCATTGCACGTGTCCAAAGCACCATCAACAATTCTTTGCCGTGAGGACGAACAAAT 401
Query 411 TCGCATTTTCG-GCTTTGTGAAAGGCTGCATAGATCAGCAAAAGGCTGGGAGTTTGTACA 469
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 402 TCGGATTTTCGAG-TTTGTGAAAGGCTGCATAGATCAGCAAAAGGCTGGGAGTTTATACA 460
Query 470 TATGTGGTTGTCCTGGAACTGGAAAATCACTGTCCATGGAGAAAGTAGTACAACAAGTTG 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 TATGTGGTTGTCCTGGAACTGGAAAATCACTGTCCATGGAGAAAGTAGTACAACAAGTTG 520
Query 530 GTGATTGGTCAACGCAGGCAGGTTTGCCCCCCGTGGATACATTGTCTGTGAATTGCACGT 589
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 521 GTGATTGGTCAACTCAGGCAGGTTTGCCACCAGTGGATACATTGTCTGTGAATTGCACGT 580
Query 590 CGCTGACTAAAACAACAGATATTTTCAGCAAGATACTTGGTGAAATCAAGCCTGGCAAGA 649
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 581 CGCTGAGTAAAACAACAGATATTTTCAGCAAGATTCTTGGTGAAATCAAGCCTGGCAAGA 640
Query 650 ATGCTAACACCAATTCTTCACCTCTACAACATCTTCA-AAGTTTGTTTTCTCAAAAACAA 708
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 641 ATGCTAACACCAACTCTTCACCTCTACAACATCTTCAGAA-TTTGTTTTCTCAAAAACAA 699
Query 709 GCATCGTCCAGCTCGAGAATGATGTTAATAATAGCAGATGAGATGGATTACTTGATCACT 768
| ||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 700 GAATCTTCCAGCTCAAGAATGATGTTAATAATTGCAGATGAGATGGATTACTTAATCAC- 758
Query 769 AAAA-ACCGAGGAGTCCTGTATGATCTTTTTATGCTTATAACTTTGCCATTTTCAAGGTG 827
|||| ||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct 759 AAAAGACCGAGGAGTCCTTTATGATCTTTTCATGCTTACAACTTTGCCATTTTCAAGGTG 818
Query 828 TATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAA 878
Query 888 GTCCCTTACTTGCAAACCTATGGTTATAACTTTCCGTGCTTATTCTAATGATCAGATCCT 947
|||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 879 GTCCCTTAATTGCAAACCTATGGTTATAACATTCCGTGCTTATTCTAAAGATCAGATCCT 938
Query 948 TAGGATACTTCAGGAGAGGCTTATGGTTCTTTCATATGTTGCATTTCAACCAAAAGCCTT 1007
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 939 TAGGATACTACAGGAGAGGCTTAGGGTTCTTTCATATGTTGCATTTCAACCAAAAGCCTT 998
Query 1008 GGAGCTCTGTGCCAGAAAAGTTGCTGCAGCATCAGGTGACATGAGAAAGGCACTATGTGT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 GGAGCTCTGTGCCAGAAAAGTTGCTGCAGCATCAGGTGACATGAGAAAGGCACTATGTGT 1058
Query 1068 CTGCAGAAGTGCTCTAGAAATCTTAGAAATGGAAGTAAGAAGATCAGCTGGTCCAGAATC 1127
||||||||||||||| |||||||||||||| ||| |||| ||||| |||||||||||||
Sbjct 1059 CTGCAGAAGTGCTCTTGAAATCTTAGAAATAGAAACAAGAGGATCAACTGGTCCAGAATC 1118
Query 1128 ACAAGGTCCTACTACAGATGATTCAGTGGTTAGGATGGATCATATGGCTGCTGCATTATC 1187
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1119 ACAAGGTCCTACTCCAGATGATTCAGTGGTGAGGATGGATCATATGGCTGCTGCATTATC 1178
Query 1188 CAAGACATTTAAATCACCTGTAGTTGAGACAATTCAGTCTCTCCCTCAACACCAACAAAT 1247
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1179 TAAGACTTTTAAATCTCCTGTAGTTGAGACAATTCAGTCTCTTCCTCAACACCAACAAAT 1238
Query 1248 CATAATATGTGCTGCTACAAAGGCTTTCAGAGGAAGCAAAAAGGATACAACCGTTGGAGA 1307
|||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1239 CATAATATGTGCTGCTGCAAAGGCTTTCAGAGGGAGCAAAAAGGATGCAACCGTTGGAGA 1298
Query 1308 GCTTAATATGTTATATCTAGAAATCTGTAAATCTTGGATGATTTCGCCAGCTGGAATTAC 1367
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1299 GCTTAATAAGTTATATCTAGAAATCTGTAAATCTTGGATGATTTCTCCAGCTGGAATCAC 1358
Query 1368 AGAGTTCACTAATATGTGTACAGTGCTAAACGATCAGGGGATATTAAAATTCGGTCAAGC 1427
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1359 AGAGTTCACTAACATGTGTACAGTGCTAAACGATCAGGGGATATTAAAAGTCGGTCAAGC 1418
Query 1428 TCGTGGGGATAAGCTAAAGAGAGTTAGCCTGAGAGTAGACGAATCAGACATCACGTTTGC 1487
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 TCGTAGGGATAAGCTAAAGAGAGTTAGCCTGAGAGTAGACGAATCAGACATCACGTTTGC 1478
Query 1488 TCTGCAGGAGATACGATTTTTCCGCAACTGTCTTGTGTGA 1527
||||||||||||||||||||||||||||||||| |||||
Sbjct 1479 TCTGCAGGAGATACGATTTTTCCGCAACTGTCTACTGTGA 1518
> AT2G29680.1 | Symbols: CDC6, ATCDC6 | cell division control 6
| chr2:12689581-12692872 FORWARD LENGTH=1643
Length=1643
Score = 678 bits (367), Expect = 0.0
Identities = 591/697 (85%), Gaps = 24/697 (3%)
Strand=Plus/Plus
Query 837 AGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAAGTCCCTTAC 896
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 935 AGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAAGTCTCTTAA 994
Query 897 TTGCAAACCTATGGTTATAACTTTCCGTGCTTATTCTAATGATCAGATCCTTAGGATACT 956
|||||||||| ||||| | ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 995 TTGCAAACCTTTGGTTGTCACTTTCCGTGCCTATTCTAAAGATCAGATCCTTAGGATTCT 1054
Query 957 TCAGGAGAGGCTTATGGTTCTTTCATATGTTGCATTTCAA-CCAAAAGCCTTGGAGCTCT 1015
|||||||||||| ||| ||| ||| |||||||||||| |||| |||||||| | |
Sbjct 1055 GCAGGAGAGGCTTGTGGCACTTCCATTTGTTGCATTTCAGTCCAAT-GCCTTGGAAATAT 1113
Query 1016 GTGCCAGAAAAGT-TGCTGCAGCATCAGGTGACATGAGAAAGGCACTATGTGTCTGCAGA 1074
|||| |||||||| | | || |||||||| |||||||||||||| ||||||||||||||
Sbjct 1114 GTGCAAGAAAAGTAT-CAGCTGCATCAGGAGACATGAGAAAGGCTCTATGTGTCTGCAGG 1172
Query 1075 AGTGCTCTAGAAATCTTAGAAATGGAAGTAAGAAGATCAGCTGG-TCCAGAATCACAAGG 1133
|| |||||||||||||||||||| ||||| ||| ||||| | | || |||| || ||||
Sbjct 1173 AGCGCTCTAGAAATCTTAGAAATAGAAGTTAGAGGATCAA-TAGATCAAGAACCAAAAGG 1231
Query 1134 TCCTACTAC-AGA-TGATTCA-GTGGTTAGGATGGATCATATGGCT-GCTGCATTATCCA 1189
||| | | | ||| || | || ||||| | ||||||||||||| | |||||||| ||||
Sbjct 1232 TCC-AGTTCCAGAGTG-T-CAAGTGGTCAAGATGGATCATATGA-TAGCTGCATTGTCCA 1287
Query 1190 AGACATTTAAATCACCTGTAGTTGAGACAATTCAGTCTCTCCCTCAACACCAACAAATCA 1249
|||| |||||||| || ||||||| || || |||||||| |||||||||||||||||||
Sbjct 1288 AGACGTTTAAATCTCCAATAGTTGACACCATCCAGTCTCTACCTCAACACCAACAAATCA 1347
Query 1250 TAATATGTGCTGCTACAAAGGCTTT-CAGAGGAAGCAAAAAGGATACAACCGTTGGAGAG 1308
|| | ||| ||||| |||||||||| | |||| ||||||||||||| |||| ||| ||||
Sbjct 1348 TAGTCTGTTCTGCTGCAAAGGCTTTTC-GAGGGAGCAAAAAGGATAGAACCATTGCAGAG 1406
Query 1309 CTTAA-TATGTTATATCTAG-AAATCTGTAAATCTTGGATGATTTCGCCAGCTGGAATTA 1366
|||| || | |||| || | ||||||||||||||| |||||| | |||||||||||||
Sbjct 1407 -TTAAATAAGCTATA-CTTGGAAATCTGTAAATCTTCGATGATAACTCCAGCTGGAATTA 1464
Query 1367 CAGAGTTCACTAATATGTGTACAGTGCTAAACGATCAGGGGATAT-TAAAA-TTCGGTCA 1424
| ||||||| ||||||||||||||||||||| ||||||||||| | ||||| || | ||
Sbjct 1465 CTGAGTTCAGTAATATGTGTACAGTGCTAAATGATCAGGGGAT-TCTAAAACTTAG-TCT 1522
Query 1425 AGCTCGTGGGGATAAGCTAAAGAGAGTTAGCCTGAGAGTAGACGAATCAGACATCACGTT 1484
||||| | ||||| ||||||||||| ||||| |||||||| ||| |||||||||| ||
Sbjct 1523 TGCTCGAGACGATAAACTAAAGAGAGTGAGCCTTAGAGTAGATGAAGCAGACATCACATT 1582
Query 1485 TGCTCTGCAGGAGATACGATTTTTCCGCAACTGTCTT 1521
|||||| ||||||| ||||| |||||||||||||||
Sbjct 1583 TGCTCTTAAGGAGATTCGATTCTTCCGCAACTGTCTT 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5