BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg311805 Length=378 Score E Sequences producing significant alignments: (Bits) Value AT1G07473.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 521 1e-147 > AT1G07473.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07476.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2294566-2295489 REVERSE LENGTH=924 Length=924 Score = 521 bits (282), Expect = 1e-147 Identities = 346/378 (92%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 1 ATGGAGAACAGTGTAAACATGTCTGGGAAAAGTGAGTCCCCAAGATCACCAACTAGGCTG 60 |||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||| ||| Sbjct 385 ATGGAGAACAGTGTGAACATGTTTGGGAAAAGTGAGTCCCCGAGATCACCCACTAGACTG 444 Query 61 CAGAGGCAAGCACCCACGGCTCTGCAACTTGACCTTGTTCCCGATAACCCCTTCTTGCAG 120 |||| ||||||||||||||||||||| || | |||||||||||| ||||||||||| ||| Sbjct 445 CAGAAGCAAGCACCCACGGCTCTGCATCTAGGCCTTGTTCCCGAGAACCCCTTCTTACAG 504 Query 121 CAGTCTTGTGATGTGGTTACAACGACAGTTATTCCTCTGCTTTCACctctctttgtctct 180 ||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| ||| Sbjct 505 CAGTCTTCTGATGTGGTTGGAACGACAGCTATTCCTCTGCTTTCACCTCTTTTTGTGTCT 564 Query 181 ccaaatctgcactcttctctctctAAAGAAGGGGACAATTGCGTGTTTCCGGTGGGATTT 240 |||| || |||||||||||||||||||||||||||| ||| | |||| ||||||||||| Sbjct 565 CCAAGTCCGCACTCTTCTCTCTCTAAAGAAGGGGACGATTCCATGTTACCGGTGGGATTA 624 Query 241 ACTGAAAAGAATGGATCTCAGCCGTCAATGGACCACAAGGAAGGGCCGCAATATTCGGCT 300 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 625 ACTGAAAAGAACGGATCTCAGCCGTCAATGGACCAGAAGGAAGGGCCGCAATATTCAGCC 684 Query 301 AAGGCCGACAATAGCAACGAGATGGCTCTCTTGAATATGTTTCAGACCAAGTTCGTGCTT 360 ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 685 AAGGCCGACCATAGCAACCAGATGGCTCTCATGAATATGTTTCAGACCAAGTTCGTGCTT 744 Query 361 GTAGATCATTCACAGTAA 378 ||||| |||||||||||| Sbjct 745 GTAGACCATTCACAGTAA 762 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17794783146 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5