BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311805

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G07473.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   521    1e-147


> AT1G07473.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G07476.1); 
Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2294566-2295489 
REVERSE LENGTH=924
Length=924

 Score =  521 bits (282),  Expect = 1e-147
 Identities = 346/378 (92%), Gaps = 0/378 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGAACAGTGTAAACATGTCTGGGAAAAGTGAGTCCCCAAGATCACCAACTAGGCTG  60
            |||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||| |||
Sbjct  385  ATGGAGAACAGTGTGAACATGTTTGGGAAAAGTGAGTCCCCGAGATCACCCACTAGACTG  444

Query  61   CAGAGGCAAGCACCCACGGCTCTGCAACTTGACCTTGTTCCCGATAACCCCTTCTTGCAG  120
            |||| ||||||||||||||||||||| || | |||||||||||| ||||||||||| |||
Sbjct  445  CAGAAGCAAGCACCCACGGCTCTGCATCTAGGCCTTGTTCCCGAGAACCCCTTCTTACAG  504

Query  121  CAGTCTTGTGATGTGGTTACAACGACAGTTATTCCTCTGCTTTCACctctctttgtctct  180
            ||||||| ||||||||||  |||||||| ||||||||||||||||||||| ||||| |||
Sbjct  505  CAGTCTTCTGATGTGGTTGGAACGACAGCTATTCCTCTGCTTTCACCTCTTTTTGTGTCT  564

Query  181  ccaaatctgcactcttctctctctAAAGAAGGGGACAATTGCGTGTTTCCGGTGGGATTT  240
            |||| || |||||||||||||||||||||||||||| ||| | |||| ||||||||||| 
Sbjct  565  CCAAGTCCGCACTCTTCTCTCTCTAAAGAAGGGGACGATTCCATGTTACCGGTGGGATTA  624

Query  241  ACTGAAAAGAATGGATCTCAGCCGTCAATGGACCACAAGGAAGGGCCGCAATATTCGGCT  300
            ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  625  ACTGAAAAGAACGGATCTCAGCCGTCAATGGACCAGAAGGAAGGGCCGCAATATTCAGCC  684

Query  301  AAGGCCGACAATAGCAACGAGATGGCTCTCTTGAATATGTTTCAGACCAAGTTCGTGCTT  360
            ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct  685  AAGGCCGACCATAGCAACCAGATGGCTCTCATGAATATGTTTCAGACCAAGTTCGTGCTT  744

Query  361  GTAGATCATTCACAGTAA  378
            ||||| ||||||||||||
Sbjct  745  GTAGACCATTCACAGTAA  762



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5