BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311814
Length=3033
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07620.1 | Symbols: ATOBGM | GTP-binding protein Obg/CgtA | ... 2108 0.0
AT1G07615.1 | Symbols: | GTP-binding protein Obg/CgtA | chr1:2... 1520 0.0
> AT1G07620.1 | Symbols: ATOBGM | GTP-binding protein Obg/CgtA
| chr1:2344390-2346842 REVERSE LENGTH=2053
Length=2053
Score = 2108 bits (1141), Expect = 0.0
Identities = 1443/1584 (91%), Gaps = 39/1584 (2%)
Strand=Plus/Plus
Query 7 AAGCATTTGAAAAACGATAATACAAGTCCAAAAGATGGCAAATATAATCACAAATC-AGG 65
||||||||||||||||| | | |||||||||| |||||||||| ||||||||| | |||
Sbjct 235 AAGCATTTGAAAAACGAGAGTTCAAGTCCAAACCATGGCAAATACAATCACAAA-CTAGG 293
Query 66 ATGGTTAGCTGGAATGCTTCATGTGCTTGACTTTCACCATTGGAGAACTAAGAACCGACC 125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 ATGGTTAGCTGGAATGCTTCATGTGCTTGACTTCCACCATTGGAGAACTAAGAACCGACC 353
Query 126 AATTTGTTGGAAGACCCCAAGAACCCATTCCTTGATGCGTGAAACTGAGGAACAAGAACC 185
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AATCTGTTGGAAGACCCCAAGAACCCATTCCTTGATGCGTGAAACTGAGGAACAAGAACC 413
Query 186 GTTTCTTGATTCTAAGGAAGGA-GATTCAAAGATGCTTAATGTTGCTGCAGATAATAAGC 244
|||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||||
Sbjct 414 GTTTCTTGATTCTAAG-ATTAATGATTCAAAGATGCTTAGTGTTGTTGCAGATAATAAGC 472
Query 245 CAACAAGAC-AGGGAACAAAACCGAAGAAGATGATGGCTACGAAGCAAGTAACTGAGTAC 303
|||| |||| || |||||||| |||||||| |||| | || ||||||||||| ||||||
Sbjct 473 CAACGAGACCAGA-AACAAAACTGAAGAAGACGATGACAACAAAGCAAGTAACCGAGTAC 531
Query 304 GTGGATTTTCTTGAAATATTGAGAAAGGAAGATGTTTTTGTCAAGATACTGAAAGATCGA 363
||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
Sbjct 532 GTGGATTTTCTTGAAATCTTGAGGAAGGAAGATGTTTTTGTCAAGATAATGAAAGATCAA 591
Query 364 GTCCAGATCAAGTCTAATCCACGAGTTTTGCCCAAGTCAGGCTCGTTTCCTATCTCAGGC 423
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 592 GTCCAGATCAAGTCTAATCCAAGGGTTTTACCCAAGTCAGGCTCGTTTCCTATCTCAGGA 651
Query 424 TCTTCACGTCCCGCTAGGAT-CGAACACAAGCAGAAGGAGAATTGGTATGCTCCAAAGCA 482
||||||||||| |||||||| | |||||||||||||||||||||||||||| ||||||||
Sbjct 652 TCTTCACGTCCTGCTAGGATTC-AACACAAGCAGAAGGAGAATTGGTATGCCCCAAAGCA 710
Query 483 AAACGGTGCCGTTTTAACTTTGAATGTTCCAAGAGACACTTCTCAAGAGCACAAACCTAT 542
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||
Sbjct 711 GAACGGTGCCGTTTTGACTTTGAAGGTTCCAAGAGACACTTCTCAAGAGTGCAAACCAAT 770
Query 543 CTCTCCTTCTCATGGCTCAGCTGATGATGATCATGGATTTAACCACGCTGTTATAACCGG 602
||||||||||||||||||||||||||||||||||||||| || |||||| | |||| |||
Sbjct 771 CTCTCCTTCTCATGGCTCAGCTGATGATGATCATGGATTCAATCACGCTATCATAAACGG 830
Query 603 ATTTAGAGAAATCAAGAAGTTGATCAAGAACGCACTTAAAGACCGAAATCACACAAAGAA 662
|||||||||||||||||||||| |||| || |||| ||||||||||||| |||||||||
Sbjct 831 ATTTAGAGAAATCAAGAAGTTGCTCAAAAATACACTCAAAGACCGAAATCGCACAAAGAA 890
Query 663 GAAGAAGAAG--G----TTTCGGATGTTCCAAAAGATGATTATGTGGGGAGATATTCTCA 716
|||||||||| | ||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 891 GAAGAAGAAGAAGAAGGTTTTGGATGTTGCGAAAGATGATTATGTGGGGAGATATTCTCA 950
Query 717 ACTCTTGGAGCAGAGTTT-TAGAAGAGAAGGTGGCAAACT-GCGTTCAAAGAGCTTAAAA 774
||||||| |||||| ||| ||||||||||||||| | || |||||| ||||||||||||
Sbjct 951 ACTCTTGAAGCAGA-TTTCTAGAAGAGAAGGTGGTGA-CTTGCGTTCGAAGAGCTTAAAA 1008
Query 775 CTTTCATATGAAGAGAAAAAGAGCGATTCAAGAGATAATAAACCGCAATTCTTCAGACGG 834
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1009 CTTTCATATGAAGAGAAAAAGAGCGATTCGAGAGATAATAAACCGCAATTCTTCAGACGG 1068
Query 835 ATTTCGTCCTTGTCCAGCCTTGAAGTTCTTGGTTCATTTCTGACCGACCTTCCAAGAGAC 894
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1069 ATTTCGTCCTTGTCCAGCCTTGAAGTTCTTGGTTCATTTCTGACCGACCTCCCTCGAGAC 1128
Query 895 AGTTCTACTTCCAATCAGGAACCTAAGAAACCTGTGGACCAAGATACTAACTTTGGATCC 954
||||||||||||||||||||| ||| || | ||| ||||||||||||||||||||| ||
Sbjct 1129 AGTTCTACTTCCAATCAGGAAACTAGGATATCTGAAGACCAAGATACTAACTTTGGAGCC 1188
Query 955 AAGAAATCTGTATTGTTATCCGAATCTCTGGTAAGAGCAGAGAAGGAAGAGAAATATGAG 1014
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1189 AAAAAATCTGTATTGTCATCCGAATCTCCGGTAAGAGCAGAGAAGGAAGAGAAGTATGAG 1248
Query 1015 GTGCAAGAGGAGAGAAGCCAAGAAATTCACCTAGACAGCTCAAACCAAAGAATAATCCTG 1074
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1249 GTGCAAGAGGAGAGAAGCCAAGAAAATCACCTAGACAGCTCAAACCAAAGAAT---CCTG 1305
Query 1075 CAACAAGATCAAGATTCAGTTCATAGTACCGATGATACTGCAGAAAAGACAGAGACTTTA 1134
|||||||| | ||||||||||| ||||||| || | || |||||||||||||||||||||
Sbjct 1306 CAACAAGAACCAGATTCAGTTCCTAGTACCAATAAAACCGCAGAAAAGACAGAGACTTTA 1365
Query 1135 CTCCCACAAGGTTTAGGTCTAAGTTCTTCAGAGATTTACAACCATGAAGAAGAAGATGAA 1194
|| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 1366 CTACCACAAGGTTTAGGTCTAAGTTCTTTAGAAATTTACAAACATGAAGAAGAAGATGAA 1425
Query 1195 GATGCCTACTTCTGTTACGTAAAGAAGGTTCTAAAAGTTTCAGGCTTCCTCGAA------ 1248
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1426 GATGCCTACTTCTGTTACGTAAAGAAGGTTTTAAAAGTTTCAGGCTTCCTCGAAAACAAA 1485
Query 1249 GA-AA--AA------TGGCACTCAGAGGAACAGCCACTAAATCCATCACTGCTTCACGAG 1299
|| || || ||| ||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 1486 GACAACGAAGAAAAGTGGTACTCAGAGGAACAACCACTGAATCCATCACTGCTTTACGAA 1545
Query 1300 CTCGAGATACACGAAGAAGTA---GTGAACGACAAAGAGCTTCTCTTTGATTTGGTTAAC 1356
||||| ||||| ||||||| | |||||||||||||||||||| || ||||||||||||
Sbjct 1546 CTCGATATACAAGAAGAAGAAACAGTGAACGACAAAGAGCTTCTATTCGATTTGGTTAAC 1605
Query 1357 GAGGCAGTCGTCGAGACACACAACCAATCACAAATATACTTCCCCAAAACATATCCATAT 1416
|||||| |||||||||| || ||||| ||||||||||||||||||||||||| |||||||
Sbjct 1606 GAGGCAATCGTCGAGACTCAAAACCATTCACAAATATACTTCCCCAAAACATTTCCATAT 1665
Query 1417 GGAAAACGTTATCTTGATGAGGTATGGGGAAGAGTCGAGTGGAGCCTCTCTGGTTTAGGA 1476
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1666 GGCAAACGTTATCTTGATGAGGTATGGGGAAGAGTGGAGTGGAGCCTCTCTGGTTTAGGA 1725
Query 1477 GCTGAGAATAGAGATCGTTCATTGGATGATATTGTGGGAAGAGATCTTCTTACAAAGAGT 1536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 GCTGAGAACAGAGATCGTTCATTGGATGATATTGTGGGAAGAGATCTTCTTACAAAGAGT 1785
Query 1537 GATGGATGGATGAATCTTCAAGGT 1560
||||||||||||||||| ||||||
Sbjct 1786 GATGGATGGATGAATCTCCAAGGT 1809
> AT1G07615.1 | Symbols: | GTP-binding protein Obg/CgtA | chr1:2342198-2344271
REVERSE LENGTH=1632
Length=1632
Score = 1520 bits (823), Expect = 0.0
Identities = 951/1013 (94%), Gaps = 7/1013 (1%)
Strand=Plus/Plus
Query 2023 GATTTAGATCCATGGGAACTTCCTGGCTCACTGGTTGAGGATCCTGCATCCGAGGAGAAC 2082
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GATTTGGATCCATGGGACCTTCCTGGCTCACTGGTTGAGGATCCTGCATCCGAGGAGAAT 605
Query 2083 TCTGATGTTCAGCAGGAAACTATGCCTGATTCTGTTCAAGTTGATGATACTGAGCAAGAG 2142
||||||||||| |||||||||||| |||| |||| |||| |||||||||||||| |||
Sbjct 606 TCTGATGTTCATCAGGAAACTATGTCTGAGTCTGATCAA---GATGATACTGAGCAGGAG 662
Query 2143 AGTTTAACGAGACATTTGGGCATGCCAAAGGAAGCTGATTTGGAAGACGACGAAGAAGAG 2202
|||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 663 AGTTTAACGAGACAGTTAGGCATGCCAAAGGAAGCTGATTTTGAAGACGACGATGAAGAG 722
Query 2203 ATTGATCAAATCAGGTATAATGCTGCGGAATTAACACAACAAGGTCAGAGAATAATCATT 2262
|||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||
Sbjct 723 ATTGATCAAATCAGGTATAATGTTGCCGAATTGACACAACAAGGTCAGAGAGTAATCATT 782
Query 2263 GCTCGTGGCGGTGAAGGCGGTTTGGGTAATGTTTCTGCTACACGCTATGTAAGAGGCAGC 2322
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 783 GCTCGTGGCGGTGAAGGTGGTTTGGGTAATGTTTCCGCTACACGTTATGTAAGAGGCAGT 842
Query 2323 AAGTTTGCTAAAACCGCAATCCGTCAAACCAATTTGAGGAGCTTGGAGGACGATGCTGAA 2382
|||||||||||| || |||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 843 AAGTTTGCTAAATCCACAATCCGTCAAACCAATTTGAGGAGCATGGAAGACGATGCTGAA 902
Query 2383 GATGATGATGAAACGTTGAGTATTAAAGCTGGTTTGCTCGGTTCCGAGGCTGTTCTGATA 2442
|| |||||||||| || |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 903 GAGGATGATGAAAGGTCGAGTATTAAAGCCGGTTTGCTCGGTTCTGAGGCTGTTCTGATA 962
Query 2443 TTAGAACTCAAGAGCATCGCCGACGTTGGCCTTGTTGGGTTGCCAAACGCAGGGAAAAGC 2502
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 963 TTAGAACTCAAGAGCATCGCCGACGTTGGCCTTGTTGGGATGCCAAACGCAGGGAAAAGC 1022
Query 2503 ACTCTTCTTGGTGCGCTATCCCGCGCTAAACCCCGTGTAGGTCACTACGCGTTCACGACC 2562
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1023 ACTCTTCTTGGTGCATTATCCCGAGCTAAACCCCGTGTAGGTCACTACGCGTTCACGACA 1082
Query 2563 CTCCGTCCCAATTTAGGAAACGTAAACTACGACGACTTCTCCATGACGGTAGCAGATATT 2622
|||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||
Sbjct 1083 CTCCGTCCCAATTTAGGAAACGTAAACTACGATGATTTCTCCATGACAGTAGCGGATATT 1142
Query 2623 CCGGGGCTTATAAAAGGAGCTCATCAGAACCG-GGGTCTAGGCCACAACTTTCTCCGCCA 2681
|| || |||||||||||||||||||||||| | ||| |||||||| ||||||||||||||
Sbjct 1143 CCAGGTCTTATAAAAGGAGCTCATCAGAACAGAGGG-CTAGGCCATAACTTTCTCCGCCA 1201
Query 2682 CATTGAACGGACCAAAGTCTTGGCATACGTTGTGGATTTAGCATCGGGGCTAGACGGTTG 2741
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1202 CATCGAACGGACCAAAGTCTTGGCTTACGTTGTGGATTTAGCATCGGGGCTAGACGGTTG 1261
Query 2742 CAG-AGGAGTGACACCGTGGCAACAACTGCGAGATCTGGTGATGGAGCTTGAGTTCCACG 2800
| | |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1262 C-GAAGGACTGACGCCGTGGCAACAACTGAGAGATCTGGTGATGGAGCTTGAGTTCCACG 1320
Query 2801 AAGAAGGGTTATCCGATAGGTCGTCTTTGATTGTGGCGAATAAGATCGATGAGGAAGGTG 2860
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1321 AAGAAGGGTTATCCGATAGGTCATCTTTGATTGTGGCGAATAAGATCGATGAGGAAGGTG 1380
Query 2861 CGGAAGAGAGACTGAAAGAACTTGAGAGGAGAGTGAAAGGAGTGAAGATATTTCCGGTTT 2920
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1381 CGGAAGAGAGATTGAAAGAACTTAAGAGGAGAGTGAAAGGAGTGAAGATATTTCCGGTTT 1440
Query 2921 GCGCGGTTCTTGAAGAAGGCGTGGCCGAGCTGAAAGATGGTCTGAAAATGCTTGTCGACG 2980
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1441 GCGCGGTTCTTGAAGAAGGCGTGGCTGAGCTGAAAGATGGTCTGAAAATGCTTGTCGACG 1500
Query 2981 GTGATGGTGAGGGATCGGAGAGATTAAAATTGGAGAATATCTGTGTTGACTAG 3033
|| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1501 GTAATGGTGAGCCATCGGAGAGATTAAAATTGGAGAATATATGTGTTGACTAG 1553
Score = 730 bits (395), Expect = 0.0
Identities = 444/468 (95%), Gaps = 2/468 (0%)
Strand=Plus/Plus
Query 1557 AGGTCGCCGGAGATCCATCGGCAACAAGTTGATGTGGCTAACCCGGGCGATTGTTTCC-G 1615
|||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 41 AGGTCGCCGGAGATTCGTCGGCAACAAGTTGATGTGGCTAATCCGGGCGATTG-TTCCTG 99
Query 1616 TTCGATATTTGGGATCTTACAAGAGACCTCAAAAACCGCCATGGATGAGAATTCCAGTGG 1675
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 100 TTCGATATTTGGGATCTTACAAGAGACCTCAAAAGCCGCCATGGATGAGAAATCCAGTGG 159
Query 1676 TATTGTACTCAGACTTTTCGGAAAAGAAAGGGAAAGTTTCTCCTTTGCAGGAGACTAGAA 1735
|||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 160 TATTCTACTCAGACTTTTCGGAGAAGAAAGGGAAAGTTGCTCCTTTGCAGGAGACTAGAA 219
Query 1736 TGAGAGATAGGTTTACTCTGTACGCACGCGGCGGTGAAGGTGGTAGTGGTTGTTCTAGCG 1795
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 220 TGAGAGATAGGTTTACTTTGTACGCACGAGGCGGTGAAGGTGGTAGTGGTTGTTCTAGCG 279
Query 1796 TTCGCCGGAGCCGTGCCGATCGCTATGGAAAACCTGATGGTGGAAATGGTGGTAGAGGAG 1855
| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 280 TCCGCCGGAGCCGTGCCGATCGCTATGGCAAACCTGATGGTGGTAATGGTGGGAGAGGAG 339
Query 1856 GTGATGTGATTTTAGAATGCACACACGCAGTTTGGGATTTCAGCGGATTACAACCCCATA 1915
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 340 GTGATGTGATTTTAGAATGCACACACGCAGTTTGGGATTTCAGTGGATTACAACCTCATA 399
Query 1916 TTAAAGGTGGGAAAGCTGGACATGGAACTTCCAAGAACAGGATAGGAAACAGAGGAGAAG 1975
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 400 TTAAAGGTGGGAAAGCTGGACACGGAACTTCCAAAAACAGGATAGGAAACAGAGGAGAAG 459
Query 1976 ACAAGATCTTGCAAGTACCTATTGGGACAGTGATTCATCTTCAGGAGG 2023
||||| || ||| ||| |||||||||||||||||||||||||||||||
Sbjct 460 ACAAGGTCCTGCTAGTGCCTATTGGGACAGTGATTCATCTTCAGGAGG 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150801830658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5