BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311843
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07900.1 | Symbols: LBD1 | LOB domain-containing protein 1 |... 843 0.0
AT2G28500.1 | Symbols: LBD11 | LOB domain-containing protein 11... 313 1e-84
> AT1G07900.1 | Symbols: LBD1 | LOB domain-containing protein 1
| chr1:2442622-2443632 FORWARD LENGTH=576
Length=576
Score = 843 bits (456), Expect = 0.0
Identities = 538/577 (93%), Gaps = 8/577 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAGTAAAAGTGACGCTTCCGCCGCCACCACTCCAATCATCTCTTCTTCTTCTTCT 60
||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||
Sbjct 3 ATGGAGAGTAAAAGTGACGCTTCTGTCGCCACCACTCCAATCATATCTTCTTCCTCTTCT 62
Query 61 CCTCCACCACCTTTTTCACCGAGGGTGGTACTCAGCCCATGCGCTGCTTGCAAAATCTTG 120
||||||||| | |||||||| |||| || || || ||||| ||||||||||||||||||
Sbjct 63 CCTCCACCATCACTTTCACCGCGGGTAGTGCTTAGTCCATGTGCTGCTTGCAAAATCTTG 122
Query 121 AGGCGGCGTTGCGCAGAGAGATGCGTTTTGGCACCGTACTTCCCTCCAACGGATCCAGCC 180
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 123 AGGCGACGTTGTGCAGAGAGATGCGTTTTGGCACCGTACTTCCCTCCAACGGATCCGGCC 182
Query 181 AAATTCACTATCGCCCACCGCGTTTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAA 240
|| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 183 AAGTTCACTATTGCACACCGCGTCTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAA 242
Query 241 CTTCCAGAATCACAAAGAACTGATGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTCGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 CTTCCAGAATCACAAAGAACTGATGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTAGA 302
Query 301 ATTAGAGATCCAGTGTATGGATGTGCAGGTTCTATATACCATCTACAACGACAAGTGAGT 360
|| ||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||
Sbjct 303 ATAAGAGATCCAGTGTATGGATGTGCAGGTGCCATATACCATTTACAAAGACAAGTGAGT 362
Query 361 GAACTCCAAGCACAACTTGCAAAATCTCAAGTGGAGATGGTGAATATGCAATTTCAAAGA 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 363 GAACTCCAAGCACAACTTGCAAAAGCTCAAGTGGAGATGGTGAATATGCAATTTCAAAGA 422
Query 421 TCAAATTTACTAGAGTT-ACTTTATAAAATGGACCAACA---GAACCAAGAACAAGATAA 476
||||||||||||||| | | ||||||| ||||||||||| ||| ||||||||||||||
Sbjct 423 TCAAATTTACTAGAGCTGA-TTTATAACATGGACCAACAACAGAAACAAGAACAAGATAA 481
Query 477 TATATTGTCCTTTGAGAGCAATGATTTGGGATTCCTTGAAGACAACTCCAACACCAACTC 536
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 482 TAT---GTCCTTTGAGAGCAATGATTTGGGATTCCTTGAAGACAAGTCCAACACCAACTC 538
Query 537 ATCAATGTTGTGGTGGGATCCTCTTTGGACATGTTGA 573
|||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCAATGTTGTGGTGGGATCCTCTTTGGACATGTTGA 575
> AT2G28500.1 | Symbols: LBD11 | LOB domain-containing protein
11 | chr2:12186569-12188142 REVERSE LENGTH=765
Length=765
Score = 313 bits (169), Expect = 1e-84
Identities = 308/376 (82%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 84 GGTGGTACTCAGCCCATGCGCTGCTTGCAAAATCTTGAGGCGGCGTTGCGCAGAGAGATG 143
||| ||||| ||||| || || |||||||| || ||| ||||||| ||||| || | |||
Sbjct 182 GGTTGTACTAAGCCCTTGTGCGGCTTGCAAGATTTTGCGGCGGCGGTGCGCCGATAAATG 241
Query 144 CGTTTTGGCACCGTACTTCCCTCCAACGGATCCAGCCAAATTCACTATCGCCCACCGCGT 203
||||||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| ||
Sbjct 242 TGTTTTGGCACCGTACTTTCCTCCTACGGACCCGGCGAAGTTCACAATCGCTCACCGTGT 301
Query 204 TTTTGGAGCCAGCAACATCATTAAGTTCTTGCAGGAACTTCCAGAATCACAAAGAACTGA 263
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 302 CTTTGGAGCTAGCAACATTATTAAGTTCTTGCAGGAACTTCCAGAATCGCAAAGAACAGA 361
Query 264 TGCGGTCAACAGTATGGTGTATGAAGCCGAAGCTCGAATTAGAGATCCAGTGTATGGATG 323
||| || || || ||||| |||||||||| |||| | || |||||||| || || |||||
Sbjct 362 TGCTGTTAATAGCATGGTCTATGAAGCCGGAGCTAGGATGAGAGATCCGGTTTACGGATG 421
Query 324 TGCAGGTTCTATATACCATCTACA-ACGACAAGTGAGTGAACTCCAAGCACAACTTGCAA 382
||| ||| | || || ||| | || | ||||||||||||| || ||||||||||||||||
Sbjct 422 TGCGGGTGCAATTTATCATTTGCAGA-GACAAGTGAGTGAGCTTCAAGCACAACTTGCAA 480
Query 383 AATCTCAAGTGGAGATGGT-GAATATGCAATTTCAAAGATCAAATTTACTAGAGTT-ACT 440
|| ||||||| ||| | || | |||||| | |||||||||| | ||||||| || | |
Sbjct 481 AAACTCAAGTAGAGTTAGTAGGC-ATGCAACTCCAAAGATCAAGTCTACTAGAATTGA-T 538
Query 441 TTATAAAATGGACCAA 456
||||| ||||| |||
Sbjct 539 ATATAATATGGAGCAA 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5