BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311844
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt... 270 9e-72
AT5G23600.1 | Symbols: | RNA 2'-phosphotransferase, Tpt1 / Kpt... 254 9e-67
> AT2G45330.1 | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt1
/ KptA family | chr2:18686336-18688035 FORWARD LENGTH=1035
Length=1035
Score = 270 bits (146), Expect = 9e-72
Identities = 170/182 (93%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 252 CACAACGGTTGAGTCAGAGAAGTTACTTAAACCAATCCTGTCACCAGAAGAAGCTCCGGT 311
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 511 CACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATACTGTCACCAGAAGAAGCTCCAGT 570
Query 312 GTGTGTGCATGGAACTTATAAGAAGAATTTGGAATCCATCTTATCATCGGGCTTAAAGCG 371
|||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 571 GTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTAGCATCGGGCTTAAAGCG 630
Query 372 CATGAATAGACTGCATATTCACTTCTCTTGTGGCTTGCCAACAGATGGTGAAGTGGTTAG 431
||||||||| ||||| |||||||||||||||| || |||||||||||||||||| ||||
Sbjct 631 TATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACAGATGGTGAAGTGATTAG 690
Query 432 TG 433
||
Sbjct 691 TG 692
Score = 233 bits (126), Expect = 1e-60
Identities = 141/148 (95%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 433 GACAACAAGAAAGCTCTTGAAGATGGGATTGCATTCTACATTTCAGACAACAAAGTGATT 492
|||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 728 GACATCAAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATATCAGACAACAAAGTGATT 787
Query 493 TTGACTGAAGGCATTGATGGTGTAGTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGG 552
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 788 TTGACTGAAGGCATTGATGGTGTATTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGG 847
Query 553 CCTGATCGA-AATCCTATACCTTTCTGA 579
|||||||| ||||| ||||||||||||
Sbjct 848 CCTGATCGGCAATCC-ATACCTTTCTGA 874
> AT5G23600.1 | Symbols: | RNA 2'-phosphotransferase, Tpt1 / KptA
family | chr5:7955994-7956632 FORWARD LENGTH=639
Length=639
Score = 254 bits (137), Expect = 9e-67
Identities = 167/182 (92%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 252 CACAACGGTTGAGTCAGAGAAGTTACTTAAACCAATCCTGTCACCAGAAGAAGCTCCGGT 311
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 276 CACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATATTGTCACCAGAAGAAGCTCCAGT 335
Query 312 GTGTGTGCATGGAACTTATAAGAAGAATTTGGAATCCATCTTATCATCGGGCTTAAAGCG 371
|||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 336 GTGTGTACATGGAACTTATAGGAAGAATTTAGAATCCATCTTAGCATCGGGCTTAAAGCG 395
Query 372 CATGAATAGACTGCATATTCACTTCTCTTGTGGCTTGCCAACAGATGGTGAAGTGGTTAG 431
||||||||| ||||| |||||||||||||||| || || ||||||||||||||| ||||
Sbjct 396 TATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCTACAGATGGTGAAGTGATTAG 455
Query 432 TG 433
||
Sbjct 456 TG 457
Score = 220 bits (119), Expect = 9e-57
Identities = 138/147 (94%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 434 ACAACAAGAAAGCTCTTGAAGATGGGATTGCATTCTACATTTCAGACAACAAAGTGATTT 493
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 494 ACATCAAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATTTCAGACAACAAAGTGATTT 553
Query 494 TGACTGAAGGCATTGATGGTGTAGTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGC 553
||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 554 TGACTCAAGGCATTGTTGGTGTCTTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGC 613
Query 554 CTGATCGA-AATCCTATACCTTTCTGA 579
||||||| ||||| ||||||||||||
Sbjct 614 CTGATCGGCAATCC-ATACCTTTCTGA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5