BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311885
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08320.1 | Symbols: TGA9, bZIP21 | bZIP transcription factor... 1509 0.0
AT1G08315.1 | Symbols: | ARM repeat superfamily protein | chr1... 1504 0.0
> AT1G08320.1 | Symbols: TGA9, bZIP21 | bZIP transcription factor
family protein | chr1:2621904-2627848 REVERSE LENGTH=1829
Length=1829
Score = 1509 bits (817), Expect = 0.0
Identities = 850/866 (98%), Gaps = 2/866 (0%)
Strand=Plus/Plus
Query 38 AGAGGAAGGCTACAACTTCAGGCAAACAGCTTGATGCTAAGAC-TCTGAGACGTTTGGCC 96
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 668 AGAGGAAGGCTACAACTTCAGGCAAACAGCTTGATGCTAAGACGT-TGAGACGTTTGGCC 726
Query 97 CAAAATAGAGAAGCTGCTCGCAAAAGCCGTCTTAGGAAAAAGGCGTATGTGCAACAGCTA 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CAAAATAGAGAAGCTGCTCGCAAAAGCCGTCTTAGGAAAAAGGCGTATGTGCAACAGCTA 786
Query 157 GAATCAAGTAGGATAAAGCTTTCCCAATTGGAGCAAGAACTTCAGCGAGCTCGTTCTCAG 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GAATCAAGTAGGATAAAGCTTTCCCAATTGGAGCAAGAACTTCAGCGAGCTCGTTCTCAG 846
Query 217 GGGCTGTTCATGGGTGGTTGTGGACCACCAGGACCTAACATCACTTCCGGAGCTGCAATA 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GGGCTGTTCATGGGTGGTTGTGGACCACCAGGACCTAACATCACTTCCGGAGCTGCAATA 906
Query 277 TTTGACATGGAATATGGGAGATGGCTAGAGGATGATAACCGGCATATGTCGGAGATTCGA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTTGACATGGAATATGGGAGATGGCTAGAGGATGATAACCGGCATATGTCGGAGATTCGA 966
Query 337 ACCGGTCTTCAGGCTCATTTATCGGACAATGATTTAAGGTTGATCGTTGACGGTTACATT 396
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 967 ACCGGTCTTCAGGCTCATTTATCTGACAATGATTTAAGGTTGATCGTTGACGGTTACATT 1026
Query 397 GCTCATTTTGATGAGATATTCCGATTAAAAGCCGTGGCCGCAAAAGCGGATGTTTTTCAC 456
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1027 GCTCATTTTGATGAGATATTCCGATTAAAAGCCGTGGCAGCGAAAGCCGATGTTTTTCAC 1086
Query 457 CTCATCATCGGAACATGGATGTCCCCAGCTGAACGTTGTTTTATTTGGATGGCCGGTTTC 516
|||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1087 CTCATCATTGGGACATGGATGTCCCCAGCCGAACGTTGTTTTATTTGGATGGCTGGTTTC 1146
Query 517 CGTCCATCCGACCTAATCAAGATATTGGTGTCGCAAATGGATCTATTGACGGAGCAACAA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 CGTCCATCCGACCTAATCAAGATATTGGTGTCGCAAATGGATCTATTGACGGAGCAACAA 1206
Query 577 CTGATGGGAATATATAGCCTACAACACTCGTCACAACAAGCAGAGGAGGCTCTCTCGCAA 636
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1207 CTGATGGGAATATATAGCCTACAACACTCGTCGCAACAAGCAGAGGAGGCTCTCTCGCAA 1266
Query 637 GGCCTCGAACAACTTCAGCAATCTCTCATTGATACTCTCGCCGCATCTCCAGTCATTGAC 696
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1267 GGCCTCGAACAACTTCAGCAATCTCTCATCGATACTCTCGCCGCATCTCCAGTCATTGAC 1326
Query 697 GGAATGCAACAAATGGCTGTCGCTCTCGGCAAGATCTCTAATCTCGAAGGCTTTATCCGC 756
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1327 GGAATGCAACAAATGGCTGTCGCTCTCGGAAAGATCTCTAATCTCGAAGGCTTTATCCGC 1386
Query 757 CAGGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCCTGACCGTCCGA 816
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1387 CAGGCTGATAACTTGAGGCAGCAGACCGTTCACCAGCTGAGGCGGATCTTGACCGTCCGA 1446
Query 817 CAAGCCGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGACGGCTCAGAGCTCTTAGC 876
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CAAGCTGCACGGTGTTTCCTAGTCATCGGAGAGTACTATGGACGGCTCAGAGCTCTTAGC 1506
Query 877 TCCCTTTGGTTGTCTCGCCCACGAGA 902
|||||||||||||| |||||||||||
Sbjct 1507 TCCCTTTGGTTGTCACGCCCACGAGA 1532
> AT1G08315.1 | Symbols: | ARM repeat superfamily protein | chr1:2620335-2621545
REVERSE LENGTH=1211
Length=1211
Score = 1504 bits (814), Expect = 0.0
Identities = 890/928 (96%), Gaps = 0/928 (0%)
Strand=Plus/Plus
Query 903 CTCTGTCTCTGAGCAAACCAGAGCCGCCGCTTTAGCTGAGCTTAGACTCATCTCCAAACA 962
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 CTCTGTCTCTGAGCAAACCAGAGCCGCTGCTTTAGCTGAGCTTAGACTCATCTCCAAACA 178
Query 963 AGATCCTGATAGCCGTCTAATCATCGCCGACGCCGGAGCTATTCCGTACCTCGCCGAAAC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 AGATCCTGATAGCCGTCTAATCATCGCCGACGCCGGAGCTATTCCGTACCTCGCCGAGAC 238
Query 1023 TCTCTACTCTTCCTCTCACTCTTCTCAGGAAAACGCCGCCGCGACTCTCCTCAACCTCTC 1082
||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCTTTACTCGTCGTCACACTCTTCTCAGGAAAACGCCGCCGCGACTCTCCTCAACCTCTC 298
Query 1083 AATCACCTCTCGCGAACCCCTAATGTCTTCACGCGGCTTACTGGACGCGCTTTCTCACGC 1142
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 AATCACCTCTCGCGAACCCCTAATGTCTTCACGCGGCTTACTCGACGCGCTTTCTCACGC 358
Query 1143 GCTTCGCCATCACGACACCACCACTTCCCCCGCCGCGGTTCAATCCTCCGCCGCCACGAT 1202
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 359 GCTTCGTCATCACGACACCACCACTTCCCCCGCCGCGGTTCAATCCTCCGCCGCTACGAT 418
Query 1203 TTACAGCCTTTTGATCGCCGAAGAGTCTTACCGACCTATCGTCGGATCTAAGCGCGATAT 1262
||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 TTATAGCCTTTTGATAGCCGAAGAGTCTTACCGACCTATCATCGGATCTAAGCGCGATAT 478
Query 1263 CATCTTCTCCCTCATTCACATCATTAGATATGCAGATTCGCATCCTCGATCGATCAAAGA 1322
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 CATCTTCTCCCTCATTCACATCATTAGATATCCAGATTCGCATCCTCGATCGATCAAAGA 538
Query 1323 CTCGCTCAAGGCACTCTTCGCGATTGCTCTATATCCGATGAACCGATCGACGATGATCTC 1382
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 539 CTCGCTCAAGGCACTCTTCGCGATCGCTCTGTATCCGATGAACCGATCGACGATGATCTC 598
Query 1383 GCTCGGCGCGATTCCTGCTCTGTTTTCGCTGATCGTGAAGGATTCACGGAGCGGGATCGT 1442
|||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 599 TCTCGGCGCGATTCCGGCTCTGTTTTCGCTGATCGTGAAAGATTCGCGGTGCGGGATCGT 658
Query 1443 GGAAGATGCGACGGCGGTTATGGCGCAAGTCGCTGGATGCGAAGAGAGCGAGGAAGGGAT 1502
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 659 TGAAGATGCGACGGCGGTTATGGCGCAAGTCGCTGGATGCGAAGATAGCGAGGACGGGAT 718
Query 1503 GAGGAGAGTTTCAGGAGCTAACGTTCTCGCGGATCTGTTAGATCCTTGCACTGGTTCCAG 1562
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 719 GAGGAGAGTTTCAGGAGCTAACGTTCTAGCGGATCTGTTAGATCCTTGCACTGGTTCGAG 778
Query 1563 CCTACGGATCAAAGAGAACGCCGTTGCTGCGCTTCTGAATCTGGCGAGATGCGGAGGCGA 1622
||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||| |
Sbjct 779 CCTACGGATCAAAGAGAACTCCGTTGGTGCGCTTTTGAATCTGGCGAGATGTGGAGGAGC 838
Query 1623 TGCAGCGAGGTCTGAAGTTGCGGCGGCGGTTGCCTCTGGTGCTGATGAAGGAGCCGTGGA 1682
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 839 TGCAGCGAGGTCTGAAGTTGCGGCGGCGGTTGCGTCTGGTGCTGATGAAGGAGCCATGGA 898
Query 1683 AGGGATCGTGTATGTAGCGGAGAATGGTAGTGTGAAAGGAAGGAAGAAGGCGGTTGATCT 1742
|||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||
Sbjct 899 AGGGATCGTGTATGTAGCTGAGAATGGTAGTCTGAAAGGAAGGAAGAAAGCGGTTGATCT 958
Query 1743 GTTGAAGCTCGTTGTCTCCGGCAATGGCGGCGGCGATTCACGTTTTGATTATTTGATCAA 1802
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 959 GTTGAAGCTCGTTGTCTCCGGTAATGGCGGCGGCGATTCACGTTTTGATTATTTGTTCAA 1018
Query 1803 TGAAAATCCAAATAGCAGAAGCAGCTGA 1830
||||||||||||||||||||||||||||
Sbjct 1019 TGAAAATCCAAATAGCAGAAGCAGCTGA 1046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90561783180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5