BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg311904 Length=852 Score E Sequences producing significant alignments: (Bits) Value AT1G08530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 632 1e-180 > AT1G08530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:2701226-2703091 FORWARD LENGTH=939 Length=939 Score = 632 bits (342), Expect = 1e-180 Identities = 376/392 (96%), Gaps = 3/392 (1%) Strand=Plus/Plus Query 462 GGCCATGGGTAGAGCTGCAACTTCCTTTGCCAAGTTAGCCGACACAGCTCGCAAAGAACT 521 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 419 GGCCATGGGTAGAGCTGCAACTTCCTTTGCAAAGTTAGCTGACACAGCTCGCAAAGAACT 478 Query 522 CCCTAGTACATTGGCAGCCGTAAGGCTCTCCGGCATGGAAATAAGCGATCTTACTCTAGA 581 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct 479 CCCTAGTACATTGGCAGCGGTAAGGCTCTCTGGCATGGAAATAAGCGATCTTACTCTTGA 538 Query 582 ATTGAGCGATTTAAGCCAAGATATAGCTGATGGGATAAACAAATCAGCTAAAGCGGTTCA 641 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 539 ATTGAGCGATTTAAGCCAAGATATAACAGATGGGATAAACAAATCAGCTAAAGCGGTTCA 598 Query 642 AGCAGCGGAAGCTGGAATCAAACAGATTGGAACACTTGCACAAG-AGCAAACTCTCTCAA 700 |||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 599 AGCAGCTGAAGCTGGAATCAAACAGATTGGAACACTTGCAC-AGCAGCAAACTCTCTCAA 657 Query 701 TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTGCAACCTGTTGTGGCTGGTGCGG 760 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 658 TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTACAACCTGTTGTGGCTGGTGCAG 717 Query 761 CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACTAAGAGACTAATGAACATTATAACCG 820 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 718 CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACCAAGAGACTAATGAACATTATAACCG 777 Query 821 GAGGAAACAAGGATGAGGATTTAGACGTTTAG 852 |||||||||||||||| |||| |||| ||||| Sbjct 778 GAGGAAACAAGGATGAAGATT-AGACATTTAG 808 Score = 560 bits (303), Expect = 7e-159 Identities = 367/397 (92%), Gaps = 8/397 (2%) Strand=Plus/Plus Query 1 ATGAAATCTCTCTGCTTCATTTCTTCTTCTACAGCTCCATTGATTCGTTCGTCTCCATTT 60 ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| Sbjct 27 ATGAAATCTCTCTGCTTCA-----T-TTCTACAGCTCCATTGATTCGTTCGCCTCCATTT 80 Query 61 CTTC-CTCTTAATCGAACAAGCTTGAATCGATTTACCCTCAAGATTCCAGCTTCTCTCTA 119 | || |||| || |||||||||||||||||||||||| || ||||||||||||||||| Sbjct 81 C-TCGATCTTTCTCCAACAAGCTTGAATCGATTTACCCTTAAAATTCCAGCTTCTCTCTA 139 Query 120 TTTATCCCATCCAACAAGATGCAGTATTTCAAACCCCTCGAGCTCGGAGGAATCGTTGGA 179 | |||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |||| | Sbjct 140 TGTATCTCATCCAACAAGATGCAGCATTTCAAACCCGTCGAGCTCTGAGGAATTGTTGAA 199 Query 180 TTCCAATGGTGGAATGTCTAGGGCATCGATCAGTGTCTTCGGAGGAACTTCGCTTAACAA 239 |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 200 TTCCAATGGTGGAATGTCTAGGGCATCGATTAGTGTCTTCGGAGGTACTTCCCTTAACAA 259 Query 240 TCTAAAGATGCAAGTGGGCAGTCCAATTTCGCTGCATTCAATCAATCCATTAGCCAAGCT 299 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 260 TCTCAAGATGCAAGTGGGCAGTCCAATTTCTCTGCATTCAATCAATCCATTAGCAAAGCT 319 Query 300 GAGTTTGAGTGATCAAGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC 359 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 GAGTTTGAGTGATCAGGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC 379 Query 360 TTTTACAAGTCTTGTGATTGCAGCTATTCCTACACTT 396 ||||||||||||||||||| ||||||||||||||||| Sbjct 380 TTTTACAAGTCTTGTGATTACAGCTATTCCTACACTT 416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41543639569 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5