BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg311904

Length=852
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G08530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   632    1e-180


> AT1G08530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast 
hits to 140 proteins in 53 species: Archae - 0; Bacteria 
- 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other 
Eukaryotes - 1 (source: NCBI BLink). | chr1:2701226-2703091 
FORWARD LENGTH=939
Length=939

 Score =  632 bits (342),  Expect = 1e-180
 Identities = 376/392 (96%), Gaps = 3/392 (1%)
 Strand=Plus/Plus

Query  462  GGCCATGGGTAGAGCTGCAACTTCCTTTGCCAAGTTAGCCGACACAGCTCGCAAAGAACT  521
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  419  GGCCATGGGTAGAGCTGCAACTTCCTTTGCAAAGTTAGCTGACACAGCTCGCAAAGAACT  478

Query  522  CCCTAGTACATTGGCAGCCGTAAGGCTCTCCGGCATGGAAATAAGCGATCTTACTCTAGA  581
            |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct  479  CCCTAGTACATTGGCAGCGGTAAGGCTCTCTGGCATGGAAATAAGCGATCTTACTCTTGA  538

Query  582  ATTGAGCGATTTAAGCCAAGATATAGCTGATGGGATAAACAAATCAGCTAAAGCGGTTCA  641
            ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct  539  ATTGAGCGATTTAAGCCAAGATATAACAGATGGGATAAACAAATCAGCTAAAGCGGTTCA  598

Query  642  AGCAGCGGAAGCTGGAATCAAACAGATTGGAACACTTGCACAAG-AGCAAACTCTCTCAA  700
            |||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  599  AGCAGCTGAAGCTGGAATCAAACAGATTGGAACACTTGCAC-AGCAGCAAACTCTCTCAA  657

Query  701  TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTGCAACCTGTTGTGGCTGGTGCGG  760
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  658  TGATTGAAGAGAGAGCAAATTTACCAGAAATATCACTACAACCTGTTGTGGCTGGTGCAG  717

Query  761  CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACTAAGAGACTAATGAACATTATAACCG  820
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  718  CCGAAAAGACTTCTCACGCAATCGGCAGTGCAACCAAGAGACTAATGAACATTATAACCG  777

Query  821  GAGGAAACAAGGATGAGGATTTAGACGTTTAG  852
            |||||||||||||||| |||| |||| |||||
Sbjct  778  GAGGAAACAAGGATGAAGATT-AGACATTTAG  808


 Score =  560 bits (303),  Expect = 7e-159
 Identities = 367/397 (92%), Gaps = 8/397 (2%)
 Strand=Plus/Plus

Query  1    ATGAAATCTCTCTGCTTCATTTCTTCTTCTACAGCTCCATTGATTCGTTCGTCTCCATTT  60
            |||||||||||||||||||     | ||||||||||||||||||||||||| ||||||||
Sbjct  27   ATGAAATCTCTCTGCTTCA-----T-TTCTACAGCTCCATTGATTCGTTCGCCTCCATTT  80

Query  61   CTTC-CTCTTAATCGAACAAGCTTGAATCGATTTACCCTCAAGATTCCAGCTTCTCTCTA  119
            | ||  ||||  || |||||||||||||||||||||||| || |||||||||||||||||
Sbjct  81   C-TCGATCTTTCTCCAACAAGCTTGAATCGATTTACCCTTAAAATTCCAGCTTCTCTCTA  139

Query  120  TTTATCCCATCCAACAAGATGCAGTATTTCAAACCCCTCGAGCTCGGAGGAATCGTTGGA  179
            | |||| ||||||||||||||||| ||||||||||| |||||||| ||||||| |||| |
Sbjct  140  TGTATCTCATCCAACAAGATGCAGCATTTCAAACCCGTCGAGCTCTGAGGAATTGTTGAA  199

Query  180  TTCCAATGGTGGAATGTCTAGGGCATCGATCAGTGTCTTCGGAGGAACTTCGCTTAACAA  239
            |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct  200  TTCCAATGGTGGAATGTCTAGGGCATCGATTAGTGTCTTCGGAGGTACTTCCCTTAACAA  259

Query  240  TCTAAAGATGCAAGTGGGCAGTCCAATTTCGCTGCATTCAATCAATCCATTAGCCAAGCT  299
            ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  260  TCTCAAGATGCAAGTGGGCAGTCCAATTTCTCTGCATTCAATCAATCCATTAGCAAAGCT  319

Query  300  GAGTTTGAGTGATCAAGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC  359
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  320  GAGTTTGAGTGATCAGGCATTTCTTCTCTTGGCCTTCATCGTTTGCACGACTTCAGTGGC  379

Query  360  TTTTACAAGTCTTGTGATTGCAGCTATTCCTACACTT  396
            ||||||||||||||||||| |||||||||||||||||
Sbjct  380  TTTTACAAGTCTTGTGATTACAGCTATTCCTACACTT  416



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41543639569


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5