BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311923
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08710.2 | Symbols: | F-box family protein | chr1:2771633-2... 1267 0.0
> AT1G08710.2 | Symbols: | F-box family protein | chr1:2771633-2773047
FORWARD LENGTH=1011
Length=1011
Score = 1267 bits (686), Expect = 0.0
Identities = 827/895 (92%), Gaps = 10/895 (1%)
Strand=Plus/Plus
Query 1 ATGTCCGCAAACGAGATACCCGACGAGCTATGGAGAAAGATCATGGAGATTGGCGTAAAG 60
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 88 ATGTCTGCAAACGAGATACCCGACGAGCTATGGAGAAAGATCCTAGAGATTGGCGTAAAG 147
Query 61 TCCTCCACTTTCTCCTACAAAGATCTCTGCTGCATCTCTATCTCCTCTCGCCGTCTCTTC 120
|| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 148 TCTTCGACTTTCTCGTACAAAGATCTTTGCTGCATCTCTATCTCCTCTCGCCGTCTCTTC 207
Query 121 CGATTGTCCTGCGATGATTCCCTCTGGGACCTTCTGCTCTTCCTTGATTTCCCTACCCAT 180
||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||
Sbjct 208 CGATTGTCCTGCGATGATTCCCTCTGGGATCTTCTGCTCGTCCATGATTTCCCTAACCAC 267
Query 181 ATCGTCTCTGCTTCCTCTTCT-C--AATCTTCCTCCAAGTTTATCTACAGGACTAGGTTT 237
|||||||||||||| |||||| | ||||| || ||||||||||||||| ||||||||||
Sbjct 268 ATCGTCTCTGCTTCTTCTTCTTCTGAATCTCCCACCAAGTTTATCTACATGACTAGGTTT 327
Query 238 GAGAGGGAGAAGGAGAGGAAAGTAGCTGCCCATAGAAGAGCTTTACTCAGAAAGGAGAGT 297
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 328 GAGAGGGAGAAGGAGAGGAAATTAGCTGCCCATAGAAGAGCTTTACTCAGGAAGGAGAGT 387
Query 298 GAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCTCGATTGTCGGACGAGGCT 357
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 388 GAAATTTCTGAATGGGGCCGGAGGATTCGTGAATTGGAGGCACGATTGTCCGACGAGGCT 447
Query 358 GAGAGATTACATTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAGCATCA 417
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GAGAGACTACAGTCTTCTTCTCTGCAATTTTCAGATTTGCTGAAAGTGAGGCAAGCATCA 507
Query 418 GTAGCTTTGAACGTTTGGCAGCCACAGATTGTACGTGGCAGACAAAAGCAATTAGTTGAG 477
||||||||||||||||||||||| || | |||||||| |||||||||||| | ||||||
Sbjct 508 GTAGCTTTGAACGTTTGGCAGCCGGAGGTAGTACGTGGTAGACAAAAGCAAATGGTTGAG 567
Query 478 CAAAACGCTGTTCCTGTTGAGGGTCGATTGCGTGCACTTGAGATGGAGATTAAGTTATGC 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 568 CAAAACGCTGTTCCTGTTGAGGGTCGATTGCGTGCACTTGAGATGGAGATGAAGTTATGC 627
Query 538 AAACAGCAAATCATGGGTGTGAATAGAGCACTTAGGGAGGTAAAACACCGATTTGATATA 597
|| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 628 AAGCAGCAAATCATGGGTTTGAATAGGGCACTTAGGGAGGTAAAACACCGATATGACATA 687
Query 598 TCCCTAAAAGAGCTAGAATCCATGAAGTATCATCCTTTACGAGATTACAAGTCGA---GT 654
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 688 GCAATAAAAGAGCTAGAATCCATGAAGTATCATCCTTTACGAGATTACAAGTCGATACGT 747
Query 655 ---GGAGACCAAGGAAGTAATGGCAAGATGAAGAAGTTGAAAACGAGCATTAACTATAGT 711
||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||
Sbjct 748 AATGGAGACCAAGGAAGTAATGGCAAGACGAAAAAGTTGAAAACTAGCATCAACTATAGT 807
Query 712 GGAGACCAAGTAAGTAATGGCAAGAGGAAGAAGTTGAAAACAAGCATTAACTGTAAGTTT 771
|||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct 808 GGAGACCAAGTAAGTAATGGCAAGAGGAGGAAGTTGAAAACAAGCATTGATTGTAAGTTT 867
Query 772 ATGAACAATTCTCACTTTTCTTCATGTAGTAGTGTTGCCGAGAAATACTATTCTTACTGT 831
||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||| |
Sbjct 868 ATGAACATTTCTCACTTTTCTTCATGTAGTAGTGTTACCGAAAAATTCTATTCTTACTCT 927
Query 832 CTAAAAATC-TCCATGAGTATTTTTCTGAAAATCTGCTTATTCTCTCAAGTGTGA 885
| |||||| | ||||||||| || |||||||||||||| |||| | ||||||||
Sbjct 928 CCAAAAATTATACATGAGTATATTCCTGAAAATCTGCTTGTTCTTTGAAGTGTGA 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5