BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg311931 Length=1161 Score E Sequences producing significant alignments: (Bits) Value AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated ... 1762 0.0 > AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated protein 27-2 | chr1:2821552-2825275 REVERSE LENGTH=1716 Length=1716 Score = 1762 bits (954), Expect = 0.0 Identities = 1111/1180 (94%), Gaps = 38/1180 (3%) Strand=Plus/Plus Query 1 ATGAATATGCCGCTGTTGGATATTCAACCACGAACGTTGCAGTTTGCAGTTGACCTGAAG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 ATGAATATGCCGCTGTTGGATATTCAACCACGAACGTTGCAGTTTGCAGTTGACCTGAAG 357 Query 61 AAGCAGAGTTCTTGCGTGGTACAGCTAACCAATACTACCCATCATTATGTTGCATTTAAG 120 ||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 AAGCAAACTTCCTGCGTGGTACAGCTAACCAATACTACCCATCATTATGTTGCATTTAAG 417 Query 121 GTTAAAACCACATCACCGAAGAAGTACTGTGTTCGTCCAAATGTTGGTGTTGTTGCACCA 180 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTTAAAACCACATCACCAAAGAAGTACTGTGTTCGTCCAAATGTTGGTGTTGTTGCACCT 477 Query 181 AAATCATCCTGTGAATTCACTGTCATTATGCAAGCTTTTAAAGAACCACCTCCAGATATG 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 AAATCAACCTGTGAATTCACTGTCATTATGCAAGCTTTTAAAGAACCACCTCCAGATATG 537 Query 241 GTTTGCAAAGACAAATTCTTAATCCAGAGTACTGCTGTATCTGCGGAAACAACTGATGAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 GTTTGCAAAGACAAATTCTTAATCCAGAGTACTGCTGTATCTGCGGAAACAACTGATGAA 597 Query 301 GACATCACAGCTAGCATGTTTTCGAAAGCGGAAGGCAAACACATAGAGGAGAACAAACTC 360 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 598 GACATCACAGCTAGCATGTTTTCGAAAGCCGAAGGCAAACACATAGAGGAGAACAAACTC 657 Query 361 AGAGTCACTCTTGTGCCGCCCTCTGACTCACCTGAACTATCTCCAATCAATACACCGAAG 420 || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 AGGGTCACGCTCGTACCGCCCTCTGACTCACCTGAACTATCTCCAATCAATACACCGAAG 717 Query 421 CAGGAAGCAGGATTTAAAGATTCCATCCTCAAGGATCGTTTATATAGCCAGTCAGAGACC 480 |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 CAGGGAGCAGTATTTGAAGATTCCATCCTCAAGGATCGTTTATATAGCCAGTCAGAGACC 777 Query 481 CTAGCTCCGCCACAATATGAGGGTGAGATTGCAAAAGAGCCTAGGATGGTTGGACATGAT 540 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 778 CTAGCTCCGCCACAATATGAGGGTGAGATTGTAAAAGAGCCTAGGATGGTTGGACATGAT 837 Query 541 GAGTTAAAGGCAGCCGACAATGCAAAGGAGTTAAATACACCAAAAATGGCCACCGTGGAT 600 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 838 GAGTTAAAGGCAGCCGACAATGCAAAGGAGTTAAAGACACCAAAAATGGCCACAGTGGAT 897 Query 601 TTTATGGAAGATCGATATACTGCTAATGACTTGAAGGCAACTAAAGATAGCTACGATTCA 660 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 TTTGTGGAAGATCGATATACTGCTAATGACTTGAAGGCAACTAAAGATAGCTACGATTCA 957 Query 661 TCGAGGATGGCAAAAGAAACTGGATTCGATCCAATTAGGTCTCATAAGGATGC--A-GAT 717 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 958 TCGAGGATGGCAAAAGAAACTGGATTCGATCCAATTAGGTCTCATAAGGATGCGGATGAT 1017 Query 718 G-A-------T---G-CAA-A--TAATTTGGACGCTCCCATGAAGAAGGCCATGGATCTA 762 | | | | ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1018 GGAAGGGCGATTAAGGCAACAACTAATTTGGACGCTCCCATGAAGAAGGCCATGGATCTA 1077 Query 763 CCTAGGGATCAAGGGTTTACTAATGGAATAGCTTCAGTTGACAGTGCAACCTATTCTGAT 822 ||||||||||||||||||||||||||||||||| |||||||||| |||| | | Sbjct 1078 CCTAGGGATCAAGGGTTTACTAATGGAATAGCT---GTTGACAGTG-AACC-A-----A- 1126 Query 823 GAGCCAAAGGTACCTAAGGAAAGAAATGTTGTCCAGCTGCAGAAAACAGATGGCCAGAAT 882 || | | | | |||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1127 -AG--ATA--T-C-TAAGGAGAGAGATGTTGTCCAGCTGCAGAAAACAGATGGCCAGAAT 1179 Query 883 GCCAGAGGATTGGATGAACTTAAGTTGGTTAAAGACATTGAGGAGATGAAGCTGAAAGTG 942 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 GTCAGAGGATTGGATGAACTTAAGTTGGTTAAAGACATTGAGGAGATGAAGCTGAAAGTG 1239 Query 943 GATGCTGTTGAATCCAAGTTAAAACAGGCTGATTCAACCATTTCAAAGCTAATGGAGGAA 1002 |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1240 GATGCTCTTGAATCCAAGTTAAAACAGGCTGATTCAACCATTTCGAAGCTAATGGAGGAG 1299 Query 1003 CGATCGATAAGCTCCCAACACAGACAAAGCTTGCAACATGAGCTGGCGGAACTGAGAACG 1062 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1300 CGATCTATAAGCTCCCAACATAGACAAAGCTTGCAACATGAGCTGGCGGAACTGAGAACG 1359 Query 1063 AAGAAGATAGTGAAAGAAGTGCACAATGGGTTCCCTCTGCTGTATGTATGCGTTGTGGCA 1122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1360 AAGAAGATAGTGAAAGAAGTGCACAATGGGTTCCCTCTGCTGTATGTATGCGTTGTGGCA 1419 Query 1123 TTCATCAGC-TATGTTATCGGGTGCTGTCTGCGCACTTGA 1161 ||||| || |||||||||||| || ||||||||||||| Sbjct 1420 TTCATT-GCCTATGTTATCGGGCACTTTCTGCGCACTTGA 1458 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56977618575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5