BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311931
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated ... 1762 0.0
> AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated
protein 27-2 | chr1:2821552-2825275 REVERSE LENGTH=1716
Length=1716
Score = 1762 bits (954), Expect = 0.0
Identities = 1111/1180 (94%), Gaps = 38/1180 (3%)
Strand=Plus/Plus
Query 1 ATGAATATGCCGCTGTTGGATATTCAACCACGAACGTTGCAGTTTGCAGTTGACCTGAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGAATATGCCGCTGTTGGATATTCAACCACGAACGTTGCAGTTTGCAGTTGACCTGAAG 357
Query 61 AAGCAGAGTTCTTGCGTGGTACAGCTAACCAATACTACCCATCATTATGTTGCATTTAAG 120
||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AAGCAAACTTCCTGCGTGGTACAGCTAACCAATACTACCCATCATTATGTTGCATTTAAG 417
Query 121 GTTAAAACCACATCACCGAAGAAGTACTGTGTTCGTCCAAATGTTGGTGTTGTTGCACCA 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTTAAAACCACATCACCAAAGAAGTACTGTGTTCGTCCAAATGTTGGTGTTGTTGCACCT 477
Query 181 AAATCATCCTGTGAATTCACTGTCATTATGCAAGCTTTTAAAGAACCACCTCCAGATATG 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAATCAACCTGTGAATTCACTGTCATTATGCAAGCTTTTAAAGAACCACCTCCAGATATG 537
Query 241 GTTTGCAAAGACAAATTCTTAATCCAGAGTACTGCTGTATCTGCGGAAACAACTGATGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTTTGCAAAGACAAATTCTTAATCCAGAGTACTGCTGTATCTGCGGAAACAACTGATGAA 597
Query 301 GACATCACAGCTAGCATGTTTTCGAAAGCGGAAGGCAAACACATAGAGGAGAACAAACTC 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 GACATCACAGCTAGCATGTTTTCGAAAGCCGAAGGCAAACACATAGAGGAGAACAAACTC 657
Query 361 AGAGTCACTCTTGTGCCGCCCTCTGACTCACCTGAACTATCTCCAATCAATACACCGAAG 420
|| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGGGTCACGCTCGTACCGCCCTCTGACTCACCTGAACTATCTCCAATCAATACACCGAAG 717
Query 421 CAGGAAGCAGGATTTAAAGATTCCATCCTCAAGGATCGTTTATATAGCCAGTCAGAGACC 480
|||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAGGGAGCAGTATTTGAAGATTCCATCCTCAAGGATCGTTTATATAGCCAGTCAGAGACC 777
Query 481 CTAGCTCCGCCACAATATGAGGGTGAGATTGCAAAAGAGCCTAGGATGGTTGGACATGAT 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 CTAGCTCCGCCACAATATGAGGGTGAGATTGTAAAAGAGCCTAGGATGGTTGGACATGAT 837
Query 541 GAGTTAAAGGCAGCCGACAATGCAAAGGAGTTAAATACACCAAAAATGGCCACCGTGGAT 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 838 GAGTTAAAGGCAGCCGACAATGCAAAGGAGTTAAAGACACCAAAAATGGCCACAGTGGAT 897
Query 601 TTTATGGAAGATCGATATACTGCTAATGACTTGAAGGCAACTAAAGATAGCTACGATTCA 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTTGTGGAAGATCGATATACTGCTAATGACTTGAAGGCAACTAAAGATAGCTACGATTCA 957
Query 661 TCGAGGATGGCAAAAGAAACTGGATTCGATCCAATTAGGTCTCATAAGGATGC--A-GAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 958 TCGAGGATGGCAAAAGAAACTGGATTCGATCCAATTAGGTCTCATAAGGATGCGGATGAT 1017
Query 718 G-A-------T---G-CAA-A--TAATTTGGACGCTCCCATGAAGAAGGCCATGGATCTA 762
| | | | ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGAAGGGCGATTAAGGCAACAACTAATTTGGACGCTCCCATGAAGAAGGCCATGGATCTA 1077
Query 763 CCTAGGGATCAAGGGTTTACTAATGGAATAGCTTCAGTTGACAGTGCAACCTATTCTGAT 822
||||||||||||||||||||||||||||||||| |||||||||| |||| | |
Sbjct 1078 CCTAGGGATCAAGGGTTTACTAATGGAATAGCT---GTTGACAGTG-AACC-A-----A- 1126
Query 823 GAGCCAAAGGTACCTAAGGAAAGAAATGTTGTCCAGCTGCAGAAAACAGATGGCCAGAAT 882
|| | | | | |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1127 -AG--ATA--T-C-TAAGGAGAGAGATGTTGTCCAGCTGCAGAAAACAGATGGCCAGAAT 1179
Query 883 GCCAGAGGATTGGATGAACTTAAGTTGGTTAAAGACATTGAGGAGATGAAGCTGAAAGTG 942
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GTCAGAGGATTGGATGAACTTAAGTTGGTTAAAGACATTGAGGAGATGAAGCTGAAAGTG 1239
Query 943 GATGCTGTTGAATCCAAGTTAAAACAGGCTGATTCAACCATTTCAAAGCTAATGGAGGAA 1002
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1240 GATGCTCTTGAATCCAAGTTAAAACAGGCTGATTCAACCATTTCGAAGCTAATGGAGGAG 1299
Query 1003 CGATCGATAAGCTCCCAACACAGACAAAGCTTGCAACATGAGCTGGCGGAACTGAGAACG 1062
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1300 CGATCTATAAGCTCCCAACATAGACAAAGCTTGCAACATGAGCTGGCGGAACTGAGAACG 1359
Query 1063 AAGAAGATAGTGAAAGAAGTGCACAATGGGTTCCCTCTGCTGTATGTATGCGTTGTGGCA 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 AAGAAGATAGTGAAAGAAGTGCACAATGGGTTCCCTCTGCTGTATGTATGCGTTGTGGCA 1419
Query 1123 TTCATCAGC-TATGTTATCGGGTGCTGTCTGCGCACTTGA 1161
||||| || |||||||||||| || |||||||||||||
Sbjct 1420 TTCATT-GCCTATGTTATCGGGCACTTTCTGCGCACTTGA 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5