BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311954
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70) fa... 3037 0.0
> AT1G09080.1 | Symbols: BIP3 | Heat shock protein 70 (Hsp 70)
family protein | chr1:2929217-2931841 REVERSE LENGTH=2116
Length=2116
Score = 3037 bits (1644), Expect = 0.0
Identities = 1858/1957 (95%), Gaps = 32/1957 (2%)
Strand=Plus/Plus
Query 1 ATGAATATTGGAGCAGCTTTGATGTCAAGCGTGGCAATAGAAAGCGAAGAGCAGAAACTG 60
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 125 ATGAATATTGGAGCAGCTTTGATGTCAAGTTTGGCAATAGAAGGCGAAGAGCAGAAACTG 184
Query 61 GGGACGGTGATAGGAATCGATCTAGGGACTACATATTCATGTGTTGGTGTGTATCATAAC 120
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 185 GGGACGGTGATAGGGATCGATCTAGGGACTACATATTCATGTGTTGGTGTCTATCATAAC 244
Query 121 AAACATGTGGAAATCATAGCAAACGATCAGGGAAACAGAATTACACCATCTTGGGTGGCT 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 245 AAACATGTGGAAATCATAGCAAACGATCAAGGAAACAGAATTACACCATCTTGGGTTGCA 304
Query 181 TTTACTGATACCGAACGTCTCATCGGGGAAGCTGCTAAGAATCAAGCAGCCAAGAACCCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTTACTGATACCGAACGTCTCATCGGGGAAGCTGCTAAGAATCAAGCAGCCAAGAACCCG 364
Query 241 GAGCGAACCATCTTCGACCCGAAACGTCTGATTGGAAGAAAATTTGATGATCCTGATGTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 GAGCGAACCATCTTCGACCCGAAACGTCTGATTGGAAGAAAATTTGATGATCCTGATGTA 424
Query 301 CAAAGGGATATCAAATTCTTGCCATACAAGGTTGTGAACAAAGATGGAAAGCCTTACATT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 425 CAAAGGGATATCAAATTCTTGCCATACAAGGTTGTGAACAAAGATGGGAAGCCTTACATT 484
Query 361 CAAGTGAAGGTTAAAGGTGAAGAGAAAGTGTTTAGCCCTGAGGAAATAAGTGCTATGATA 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 485 CAAGTGAAGGTTAAAGGTGAAGAGAAATTGTTTAGCCCTGAGGAAATAAGTGCTATGATA 544
Query 421 CTAACCAAGATGAAAGAGACAGCTGAAGCTTTCTTGGGAAAGAAGATCAAAGATGCTGTC 480
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 545 CTAACCAAGATGAAAGAAACAGCTGAAGCTTTCTTGGGAAAGAAGATTAAAGATGCTGTG 604
Query 481 ATCACGGTTCCAGATCGTATTTCAATGATGCGCAGAGGCAAGCCACAAAGGATGCAGGGG 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 605 ATCACGGTTCCAG--CGTATTTCAATGATGCGCAGAGGCAAGCCACAAAGGATGCA---G 659
Query 541 CATCTATGGGCAATCGCGGGGCTTAATGTGGTTCGTATAATCAATGAGCCAACGGGTGCA 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 -------GGGCAATCGCGGGGCTTAACGTGGTTCGTATAATCAATGAGCCAACGGGTGCT 712
Query 601 GCCATAGCTTATGGTTTAGACAAAAAAGGTGGGGAGTCAAACATTCTTGTATATGATCTA 660
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 713 GCCATAGCTTATGGTTTAGACAAAAAAGGTGGGGAGTCAAACATTCTCGTATATGATCTT 772
Query 661 GGTGGAGGAACATTTGATGTTAGTATCCTTACCATAGACAATGGAGTCTTTGAAGTCTTA 720
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GGTGGTGGAACATTCGATGTTAGTATCCTTACCATAGACAATGGAGTCTTTGAAGTCTTA 832
Query 721 TCCACAAGCGGAGACACTCACCTTGGTGGAGAAGATTTTGACCACAGAGTGATGGACTAT 780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCCACAAGTGGAGACACTCACCTTGGTGGAGAAGATTTTGACCACAGAGTGATGGACTAT 892
Query 781 TTCATCAAA-TTGGTCAAGAAGAAGTATAACAAAGACATTAGCAAGGATCACAAAGCGCT 839
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 TTCATCAAACTT-GTCAAGAAGAAGTATAACAAAGACATTAGCAAGGATCACAAAGCCCT 951
Query 840 TGGTAAACTTAGGCGCGAATGTGAGCTTGCGAAACGATCTTTGAGCAACCAGCACCAAGT 899
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGGTAAACTTAGGCGTGAATGTGAGCTTGCGAAACGATCTTTGAGCAACCAGCACCAAGT 1011
Query 900 CCGTGTTGAAATTGAGTCACTCTTTGATGGAGTTGATTTCTCTGAGCCTTTAACGAGAGC 959
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CCGTGTTGAGATTGAGTCGCTCTTTGATGGAGTTGATTTCTCTGAGCCTTTAACGAGAGC 1071
Query 960 AAGATTCGAGGAACTCAACATGGACTTGTTCAAGAAGACTATGGAGCCAGTAAAGAAGGC 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1072 AAGATTCGAGGAACTCAACATGGATTTGTTCAAGAAGACTATGGAGCCAGTGAAGAAGGC 1131
Query 1020 TCTTAAAGATGCAGGG-TTAAAGAAATCCCAAATTGACGAGATTGTTCTTGTTGGAGGAA 1078
|||||||||||| ||| || |||||||| | || |||||||||||||||||||||||||
Sbjct 1132 TCTTAAAGATGC-GGGTTTGAAGAAATCTGATATCGACGAGATTGTTCTTGTTGGAGGAA 1190
Query 1079 GCACTCGAATCCCAAAAGTTCAGCAGATGTTGAAGGATTTCTTTGAAGGCAAGGAAGCCA 1138
||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |||
Sbjct 1191 GCACTCGAATCCCAAAAGTTCAGCAGATGTTAAAGGATTTCTTCGACGGCAAGGAACCCA 1250
Query 1139 GCAAAGGGACTAACCCTGATGAGGCTGTGGCCTATGGAGCCGCGGTCCAAGGTGGAGTAT 1198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1251 GCAAAGGGACTAACCCTGATGAGGCTGTGGCCTATGGCGCCGCGGTCCAAGGTGGAGTAT 1310
Query 1199 TAAGTGGTGAAGGTGGAGAAGAAACACAAAATATTCTGCTGCTTGATGTTGCGCCTTTGA 1258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1311 TAAGTGGTGAAGGTGGAGAAGAAACACAAAATATTCTACTGCTTGATGTTGCGCCTTTGA 1370
Query 1259 GCCTCGGTATTGAAACTGTCGGAGGCATGATGACAAACATTATTCCGAGGAACACGGCGA 1318
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1371 GTCTCGGTATTGAAACTGTCGGAGGCGTGATGACAAACATTATTCCGAGGAACACGGTGA 1430
Query 1319 TCCCAACAAAGAAGTCTCAGGTGTTCACGACTTACCAAGATCAGCAAACTACTGTGAGC- 1377
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1431 TCCCAACGAAGAAGTCTCAGGTGTTCACTACTTACCAAGATCAGCAAACTACTGTGA-CT 1489
Query 1378 ATCAACGTCTATGAAGGCGAGAGAAGCATGACTAAAGATAACCGCGAGCTCGGAAAATTC 1437
||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1490 ATCAACGTCTACGAAGGCGAGAGAAGCATGACGAAAGATAACCGCGAGCTTGGAAAATTC 1549
Query 1438 GATCTCACAGGCATTCTTCCTGCACCCAGGGGAGTGCCACAGATTGAGGTGACTTTCGAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GATCTCACAGGCATTCTTCCTGCACCCAGGGGAGTGCCACAGATTGAGGTGACTTTCGAA 1609
Query 1498 GTAGACGCAAATGGGATCCTTCAGGTGAAAGCCGAAGACAAAGTTG-TAAAGACGTCACA 1556
|| ||||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||
Sbjct 1610 GTGGACGCAAATGGGATCCTGCAGGTGAAAGCTGAAGACAAAGTTGCT-AAGACGTCACA 1668
Query 1557 GTCGATTACAATAACGAACGATAAAGGTCGTTTGACAGAAGAAGAGATTGAGGAAATGAT 1616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ATCGATTACAATAACGAACGATAAAGGTCGTTTGACAGAAGAAGAGATTGAGGAAATGAT 1728
Query 1617 CAGAGAAGCAGAGGAGTTTGCTGAGGAAGATAGGATTATGAAGGAGAAGATTGATGCGAG 1676
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1729 CAGAGAAGCAGAGGAGTTTGCTGAGGAAGATAAGATTATGAAGGAGAAGATTGATGCGAG 1788
Query 1677 GAACAAGCTTGAAACGTATGTGTACAACATGAAAAGTACAATGGCCGATAAGGAGAAG-- 1734
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1789 GAACAAGCTTGAAACGTATGTGTACAACATGAAAAGTACAGTGGCCGATAAGGAGAAGCT 1848
Query 1735 ----A------TAAGTGATGAGGATAAAGAAAAGATGGAAGAGGTTTTGAAGGAGGCGTT 1784
| |||||||||| |||||||| |||||||||| ||||||||||||||| ||
Sbjct 1849 TGCGAAGAAGATAAGTGATGAAGATAAAGAGAAGATGGAAGGGGTTTTGAAGGAGGCTTT 1908
Query 1785 GGAGTGGTTAGAAGAGAAGGTGAGTGCAGAGAAGGAAGATTACGATGAGAAAATGAAGGA 1844
|||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||
Sbjct 1909 GGAGTGGTTAGAAGAGAATGTGAATGCAGAGAAGGAAGATTATGATGAGAAACTGAAGGA 1968
Query 1845 GGTGGAGTCAGTTTGTAACCCGGTTATTAAGTCGGTTTACGAGAAAACCGGGGGAGAGAG 1904
|||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1969 GGTGGAGTTGGTTTGTGACCCGGTTATTAAGTCGGTTTACGAGAAAACCGAGGGAGAGAA 2028
Query 1905 TGAAGACGACGGTGGAGATGATCATGATGAGTTATAG 1941
||| ||||||| |||||||||||| ||||||||||||
Sbjct 2029 TGAGGACGACGATGGAGATGATCACGATGAGTTATAG 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5