BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311956
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09100.1 | Symbols: RPT5B | 26S proteasome AAA-ATPase subuni... 1664 0.0
AT3G05530.1 | Symbols: RPT5A, ATS6A.2 | regulatory particle tri... 752 0.0
> AT1G09100.1 | Symbols: RPT5B | 26S proteasome AAA-ATPase subunit
RPT5B | chr1:2936528-2939326 REVERSE LENGTH=1487
Length=1487
Score = 1664 bits (901), Expect = 0.0
Identities = 1031/1089 (95%), Gaps = 27/1089 (2%)
Strand=Plus/Plus
Query 160 AAGATTAAGCTAAACAAACAGCTTCCTTACTTAGTCGGCAATATCGTTGAGATTCTTGAG 219
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 252 AAGATTAAGCTTAACAAACAGCTTCCTTACTTAGTTGGCAATATCGTTGAGATTCTTGAG 311
Query 220 ATGAGTCCAGAGGATGATGCAGAGGAATATGGAGCGAATATCGATCTGGACTCTCAGAGG 279
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 312 ATGAGTCCAGAGGATGATGCAGAGGAAGATGGAGCGAATATCGATCTGGACTCTCAGAGG 371
Query 280 AAGGGAAAATGCGTCGTTCTTAAAACATCAACTCGCCAGACCATCTTTCTCCCCGTTGTT 339
|||||||| || |||||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct 372 AAGGGAAAGTGTGTCGTTCTAAAAACATCAACTCGTCAGACCATCTTCCTCCCTGTTGTT 431
Query 340 GGACTTGTTGATCCGGATACATTGAAGCCTGGGGACTTAGTTGGAGTTAACAAAGATAGC 399
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 GGACTTGTTGATCCAGATACATTGAAGCCTGGGGACTTAGTTGGAGTTAACAAAGATAGT 491
Query 400 TACTTGATTCTGGATACTTTGCCGTCTGAATATGATTCAAGAGTAAAAGCAATGGAGGTT 459
|||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 492 TACTTGATTCTGGATACTTTACCTTCTGAGTATGATTCAAGAGTAAAAGCAATGGAGGTC 551
Query 460 GACGAAAAACCTACTGAAGACTACAATGATATAGGGGGACTAGAGAAGCAG--GCTA-AA 516
|||||||||||||||||||||||||||||||||||||||||||| || ||| | | ||
Sbjct 552 GACGAAAAACCTACTGAAGACTACAATGATATAGGGGGACTAGAAAAACAGATACAAGAA 611
Query 517 CTTGTTGAAGCCATTGTGTTGCCAATGACTCATAAAGAGCAGTTCGAAAAGTTGGGTATC 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CTTGTTGAAGCCATTGTGTTGCCAATGACTCATAAAGAGCAGTTCGAAAAGTTGGGTATC 671
Query 577 CGGCCACCTAAAGGTGTACTCTTGTATGGTCCTCCTGGAACCGGAAAGACGTTGATGGCC 636
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CGTCCACCAAAAGGTGTACTCTTGTATGGTCCTCCTGGAACCGGAAAGACGTTGATGGCC 731
Query 637 CGAGCTTGTGCAGCACAGACAAATGCAACTTTCCTGAAACTAGCAGGGCCACAACTT--- 693
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 732 CGAGCTTGTGCAGCACAGACAAATGCAACTTTCCTCAAACTAGCAGGGCCACAACTTGTT 791
Query 694 -A--TGTTCATTGGAGATGGAGCAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAG 750
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 CAGATGTTCATCGGAGATGGAGCAAAACTTGTCCGTGATGCTTTCCTGCTTGCAAAAGAG 851
Query 751 AAATCCCCTTGTATTATATTCATAGACGAGATTGACGCAATTGGGACAAAGCGTTTTGAT 810
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 852 AAATCCCCTTGTATTATATTCATAGATGAGATTGACGCAATAGGGACAAAGCGTTTTGAT 911
Query 811 AGCGAAGTTAGTGGAGACCGTGAGGTGCAAAGGACAATGTTGGAGCTGCTCAACCAGCTG 870
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 912 AGCGAAGTTAGTGGAGACCGTGAGGTACAAAGGACAATGTTGGAGCTGCTCAACCAGCTT 971
Query 871 GATGGATTCAGCAGCGATGATCGCATCAAGGTTATTGCAGCGACAAATCGTGCTGATATA 930
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 972 GATGGATTCAGCAGCGATGATCGCATTAAGGTTATTGCAGCGACAAATCGTGCTGATATA 1031
Query 931 CTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATCGTAAAATCG-G---C---ACCCC 983
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1032 CTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATCGTAAAATCGAGTTTCCGCACCCC 1091
Query 984 ACTGAAGAAGCTAGAGGCAGGATCTTACAG----------G-AAAATGAATGTGAATGCA 1032
|||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1092 ACTGAAGAAGCTAGAGGCAGGATCTTACAGATACATTCAAGGAAAATGAATGTGAATGCA 1151
Query 1033 GACGTCAATTTTGAAGAGCTTGCTCGATCAACGGATGATTTCAATGGAGCTCAACTCAAA 1092
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1152 GACGTCAATTTTGAAGAGCTTGCTCGGTCAACGGATGATTTCAATGGAGCTCAACTCAAA 1211
Query 1093 GCAGTGTGTGTTGAAGCGGGTGTGCTTGCCCTGCGCCGGGATGCAACTGAGGTGAACCAT 1152
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1212 GCAGTGTGTGTTGAAGCGGGTATGCTTGCCCTGCGCCGGGATGCAACTGAGGTGAACCAT 1271
Query 1153 GAGGATTTCAATGAAGGTATAATTCAAGTACAAGCCAAGAAGAAAGCAAGCTTAAATTAC 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1272 GAGGATTTCAATGAAGGTATAATTCAAGTACAAGCCAAGAAGAAAGCAAGCTTGAATTAC 1331
Query 1213 TACGCCTAA 1221
|||||||||
Sbjct 1332 TACGCCTAA 1340
Score = 222 bits (120), Expect = 5e-57
Identities = 138/147 (94%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 13 ACGGCGATGGCGGAGGATACGAGCTTCGAGGAAGAGCAACTAGTTTCCATGACTCCTGAT 72
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||
Sbjct 75 ACGGCGATGGCGGAGGATACGAGCTTCGAGGGAGACCAACTAGCTTCCATGACTACTGAT 134
Query 73 GACATCCCTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGGAAGAATTG 132
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 135 GACATCGGTAGAGCTTCTCGTCTCTTAGCCAACGAGATTCGCATCCTCAAGGAAGAATCG 194
Query 133 CAGAGGGCAAACCTGGATTTGGAATCA 159
|||||| ||||||| ||||||||||||
Sbjct 195 CAGAGGACAAACCTTGATTTGGAATCA 221
> AT3G05530.1 | Symbols: RPT5A, ATS6A.2 | regulatory particle triple-A
ATPase 5A | chr3:1603400-1606231 FORWARD LENGTH=1653
Length=1653
Score = 752 bits (407), Expect = 0.0
Identities = 877/1099 (80%), Gaps = 51/1099 (5%)
Strand=Plus/Plus
Query 160 AAGATTAAGCTAAACAAACAGCTTCCTTACTTAGTCGGCAATATCGTTGAGATTCTT-GA 218
|||||||| || ||||| ||||| |||||||| || ||||| || || |||||| || ||
Sbjct 327 AAGATTAAACTCAACAAGCAGCTGCCTTACTTGGTTGGCAACATTGTCGAGATT-TTGGA 385
Query 219 GATGAGTCCAGAGGATGATGCAGAGGAATATGGAGCGAATATCGATCTGGACTCTCAGA- 277
||||| |||||| |||||||| |||||| |||| || ||||| ||||| ||||| || |
Sbjct 386 GATGAATCCAGAAGATGATGCTGAGGAAGATGGTGCAAATATTGATCTTGACTCGCA-AC 444
Query 278 GGAAGGGAAAATGCGTCGTTCTT-AAAACATCAACTCGCCAGACCATCTTTCTCCCCGTT 336
|||| |||||||| || | | || ||||| || || || |||||||||||||| || |||
Sbjct 445 GGAAAGGAAAATGTGTTG-TGTTGAAAACGTCTACACGGCAGACCATCTTTCTACCAGTT 503
Query 337 GTTGGACTTGTTGATCCGGATACATTGAAGCCTGGGGACTTAGTTGGAGTTAACAAAGAT 396
|||||||| || ||||| |||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 504 GTTGGACTCGTGGATCCTGATAGTTTGAAACCTGGTGACTTGGTTGGAGTTAACAAAGAT 563
Query 397 AGCTACTTGATTCTGGATACTTTGCCGTCTGAATATGATTCAAGAGTAAAAGCAATGGAG 456
|||||||||||| ||||||| ||||| || || ||||| || || || ||||| ||||||
Sbjct 564 AGCTACTTGATTTTGGATACCTTGCCATCCGAGTATGACTCTAGGGTTAAAGCCATGGAG 623
Query 457 GTTGACGAAAAACCTACTGAAGACTACAATGATATAGGGGGACTAGAGAAGCAGG-CTAA 515
|| || |||||||| |||||||| |||||||| || || ||||||||||||||| | ||
Sbjct 624 GTCGATGAAAAACCAACTGAAGATTACAATGACATTGGAGGACTAGAGAAGCAGATCCAA 683
Query 516 -A-CTTGTTGAAGCCATTGTG-TTGCCAATGACTCATAAAGAGCAGTTC-GAAAAGTTGG 571
| ||||| || || |||||| || ||| |||| || || || | ||| || ||| |||
Sbjct 684 GAGCTTGTAGAGGCAATTGTGCTTCCCA-TGACGCACAAGGAAC-GTTTTGAGAAGCTGG 741
Query 572 GTATCCGGCCACCTAAAGGT-GTACTCTTGTATGGTCCTCCTGGAACCGG-AAAGACGTT 629
|| | || ||||| ||||| || |||||||||||||| || || || || ||| || ||
Sbjct 742 GTGTTCGTCCACC-AAAGGGAGTGCTCTTGTATGGTCCCCCAGGGACTGGTAAA-ACTTT 799
Query 630 GATGGCCCGAGCTTGTGCAGCACAGACAAATGCAACTTTCCTGAAACTAGCAGGGCCACA 689
||||| || || || ||||||||||| ||||| || ||||| ||| | ||||| || ||
Sbjct 800 AATGGCTCGTGCCTGCGCAGCACAGACCAATGCCACCTTCCTTAAATTGGCAGGCCCTCA 859
Query 690 ACT--T--A--TGTTCATTGGAGATGGAGCAAAACTTGTCCGTGATGC-TTTCCTGCTTG 742
| | | | ||||||||||||| |||||||| |||||||||||||| |||| ||||
Sbjct 860 ATTGGTCCAGATGTTCATTGGAGACGGAGCAAAGCTTGTCCGTGATGCCTTTCAA-CTTG 918
Query 743 CAAAAGAGAAATCCCCTTGTATTATATTCATAGACGAGATTGACGCAATTGGGACAAAGC 802
| ||||||||| | || || ||||| |||||||| || || || || ||||| |||||||
Sbjct 919 CCAAAGAGAAAGCTCCGTGCATTATCTTCATAGATGAAATCGATGCCATTGGTACAAAGC 978
Query 803 GTTTTGATAGCGAAGTTAGTGGAGACCGTGAGGTGCAAAGGACAATGTTGGAGCTGCTCA 862
|||| || || ||||| || |||||| | || ||||| ||||| ||||||||| ||||||
Sbjct 979 GTTTCGACAGTGAAGTCAGCGGAGACAGGGAAGTGCAGAGGACTATGTTGGAGTTGCTCA 1038
Query 863 ACCAGCTGGATGGATTCAGCAGCGATGATCGCATCAAGGTTATTGCAGCGACAAATCGTG 922
| || || || |||||||| |||||||| || || ||||| |||||||| || || ||||
Sbjct 1039 ATCAACTTGACGGATTCAGTAGCGATGAACGTATTAAGGTGATTGCAGCTACTAACCGTG 1098
Query 923 CTGATATACTAGATCCTGCCCTTATGCGTTCTGGTCGTTTGGATC-GTAAA-ATCG-G-- 977
| ||||| || || || || || |||||||||||||| || || | | ||| || | |
Sbjct 1099 CAGATATTCTGGACCCAGCACTCATGCGTTCTGGTCGATTAGA-CAG-AAAGATTGAGTT 1156
Query 978 C--AC-CCCA-CTGAAGAAGCTAGAGGCAGGA-TCTT--A----CA-----GGAAAATGA 1021
| || |||| | |||||||| |||| || || |||| | || |||| ||||
Sbjct 1157 CCCACACCCAACCGAAGAAGCGAGAG-CAAGAATCTTGCAGATTCACTCAAGGAAGATGA 1215
Query 1022 ATGTGAATGCAGACGTCAATTTTGAAGAGCTTGCTCGATCAACGGATGATTTCAATGGAG 1081
|||| | |||||||||| ||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1216 ATGTCCACCCAGACGTCAACTTTGAGGAGCTTGCACGATCAACAGATGATTTCAATGGAG 1275
Query 1082 CTCAACTCAAAGCAGTGTGTGTTGAAGCGGGTGTGCTT-GCCCTGCGCCGGGATGCAACT 1140
|||| || |||||||||||||| || || || || || || || ||||| ||||| ||
Sbjct 1276 CTCAGCTGAAAGCAGTGTGTGTAGAGGCAGGCATG-TTAGCTCTTCGCCGTGATGCCACA 1334
Query 1141 GAGGTGAACCATGAGGATTTCAATGAAGGTATAATTCAAGTACAAGCCAAGAAGAAAGCA 1200
|||||||||||||| || |||||||||||||| || ||||| || |||||||||||||||
Sbjct 1335 GAGGTGAACCATGAAGACTTCAATGAAGGTATCATCCAAGTCCAGGCCAAGAAGAAAGCA 1394
Query 1201 AGCTTAAATTACTACGCCT 1219
||||| || ||||||||||
Sbjct 1395 AGCTTGAACTACTACGCCT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5