BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311961
Length=3132
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09170.1 | Symbols: | P-loop nucleoside triphosphate hydrol... 2435 0.0
> AT1G09170.1 | Symbols: | P-loop nucleoside triphosphate hydrolases
superfamily protein with CH (Calponin Homology) domain
| chr1:2956589-2962207 REVERSE LENGTH=3033
Length=3033
Score = 2435 bits (1318), Expect = 0.0
Identities = 1490/1571 (95%), Gaps = 20/1571 (1%)
Strand=Plus/Plus
Query 1572 AGAGGCGGTGTTTGCAGACACTCAACCTCTGATCCGGTCTGTTCTTGATGGTTATAATGT 1631
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1473 AGAGGCGGTGTTTGCAGACACTCAACCTCTGATCCGGTCTGTTCTTGATGGCTATAATGT 1532
Query 1632 ATGCATATTTGCATACGGCCAAACAGGATCCGGAAAAACTTTCACCATGATGGGACCTAA 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 ATGCATATTTGCATACGGCCAAACAGGATCCGGAAAAACTTTCACCATGATGGGACCTAA 1592
Query 1692 TGAGCTCACGGATGAGAGCTTAGGAGTAAACTACAGAGCATTGAGTGATCTCTTTCATTT 1751
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 TGAGCTCACGGACGAGACCTTAGGAGTAAACTACAGAGCATTGAGTGATCTCTTTCATTT 1652
Query 1752 GTCAAAGATTCGAAACAGTTCACAAGATGGAATCAACGTACCAGAGGCGACATTGGTTCC 1811
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1653 GTCAAAGATTCGAAACAGTACACAAGATGGAATCAACGTACCAGAGGCGACACTGGTTCC 1712
Query 1812 AGTCTCCACAACTTCAGACGTCATTTATTTGATGAATATTGGTCAAAAGAACCGTGCGGT 1871
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1713 AGTCTCCACAACTTCAGACGTCATTCATTTGATGAATATTGGTCAAAAGAACCGTGCGGT 1772
Query 1872 CAGCGCCACAGCCATGAATGACCGCAGCAGCCGCTCTCACAGCTGTCTCACTGTACATGT 1931
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1773 CAGCGCCACAGCCATGAATGACCGCAGCAGTCGCTCTCACAGCTGTCTCACAGTACACGT 1832
Query 1932 CCAAGGAAAAGATCTAACATCAGGAGTCACTCTAAGGGGTTCAATGCATTTGGTTGATCT 1991
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1833 CCAAGGAAAAGATCTAACATCAGGAGTTACTCTAAGGGGTTCAATGCATTTGGTTGATCT 1892
Query 1992 TGCGGGAAGTGAAAGGATCGACAAGTCTGAGGTCACTGGTGATAGGTTAAAAGAGGCACA 2051
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 TGCGGGAAGCGAAAGGATCGACAAGTCTGAGGTCACTGGTGATAGGTTAAAAGAGGCACA 1952
Query 2052 ACACATCAACAAGTCTCTCTCTGCTCTAGGAGACGTGATTGCATCTCTCTCTCAGAAAAA 2111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 ACACATCAACAAGTCTCTCTCTGCTCTAGGAGACGTGATTGCATCTCTCTCTCAGAAAAA 2012
Query 2112 CAACCACATTCCTTATCGCAATAGTAAACTTACTCAACTGCTCCAAGACGCTTTAGGAGG 2171
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2013 CAACCACATTCCTTATCGCAATAGTAAACTCACCCAACTGCTCCAAGACGCTTTAGGAGG 2072
Query 2172 ACAAGCGAAAACGCTCATGTTTATTCACATTAGCCCTGAAGTAGAAGATTTGGGAGAAAC 2231
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2073 ACAAGCGAAAACGCTCATGTTTATTCACATTAGCCCTGAACTAGAAGATTTGGGAGAAAC 2132
Query 2232 ACTCAGCACCTTGAAATTTGCAGAGAGGGTGGCCACTGTTGAACTCGGTGCTGCTCGTGT 2291
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2133 ACTCAGCACCCTGAAATTTGCAGAGAGGGTGGCCACTGTTGACCTCGGTGCTGCTCGTGT 2192
Query 2292 CAACAAAGACACTTCTGAGGTTAAAGAACTCAAAGAACAGATTGCTAGTTTGAAACTTGC 2351
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2193 CAATAAGGACACTTCTGAGGTTAAAGAACTCAAAGAACAGATTGCTAGTTTGAAACTTGC 2252
Query 2352 GCTAGCGAGAAAGGAGAGCGGATCAGATCAAACACTGCTCCCAAGACCCCTTACGCCTGA 2411
||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||||
Sbjct 2253 GCTAGCGAGAAAGGAGAGCGGGGCAGATCAAACACAGCTCCAAAGACCCCTTACTCCTGA 2312
Query 2412 CAAACTTCTCAGAAAAAAGTCACTCGGCGTTTCGTCTTCATTCTCTAAATCAGCAAAC-- 2469
||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 2313 TAAACTCCTCAGAAAAAAGTCACTTGGCGTTTCGTCTTCATTTTCAAAATCAGCAAACAG 2372
Query 2470 -ACAAGACAGTTCCAAACCAAACATAAGACATCATCACAGATTGATGATCTCAACAACAT 2528
||||||||| ||||||||||||||||| | ||||||||||||||||| |||||| |||
Sbjct 2373 TACAAGACAGGTCCAAACCAAACATAAG-C--CATCACAGATTGATGATGTCAACAGCAT 2429
Query 2529 TGAGGGTCAAAGTGACTCTGCATCTAGCCTTGACTTACAAGGACTAGTGGGTTCACCATC 2588
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2430 TGAGGGTCAAAGTGACTCTGCATCTAGCCTTGACTTACAAGGACTAGTAGGTTCACCGTC 2489
Query 2589 ATGGAAAAGCCCGTCGATG-GATGAGAAAGAGGAGGAAATAGAATTTA-TACCAGCTGGA 2646
|||||||| |||| ||| | |||| |||||||||||| || ||||||| || | | |||
Sbjct 2490 ATGGAAAACCCCGCCGA-GAGATGGGAAAGAGGAGGACATGGAATTTATTA-TACCAGGA 2547
Query 2647 AGTGAATGGGTTGATAAACACGAGGACGAAATCACACGTAGTAGCAAACCTGAAAACAGA 2706
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2548 AGTGAATGGGTTGATAAACACGAGGACGAAATCACGCGTAGTAGCAAACCTGAAAACAGA 2607
Query 2707 TCACATACACAGCTTGAGAAGCGATCGTCTAGCTTGAAACGTG-AGCCAACGCGAGGTGT 2765
||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||
Sbjct 2608 GCACATACACAGCTTGAGAAGCGAACGTCTAGCTTGAAACGTGAAG-CAACTCGAGGTGT 2666
Query 2766 AGACCATAACAAGTGCAGTAATAATAATGTAGATAAAGGATTAGAGGTAAGGAAGATTCC 2825
||| | || |||| |||||| || |||||||||||||||||||||||||||||||||
Sbjct 2667 AGATAAGAATAAGT---GTAATAGTAGTGTAGATAAAGGATTAGAGGTAAGGAAGATTCC 2723
Query 2826 ATACGAAGAAGAAGCAAATGAGTCAGATGAAACCGCAACAAGTGATTGCTCGGAGACTAA 2885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2724 ATACGAAGAAGAAGCAAATGAGTCAGATGAAACCGCAACAAGTGATTGCTCGGAGACTAA 2783
Query 2886 CTTGATGTGGCAGTTGAATGTTCAAGTGAATATGCCTAGACCAGCTTCTAATGGTTCTTC 2945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2784 CTTGATGTGGCAGTTGAATGTTCAAGTGAATATGCCTAGACCAGCTTCTAATGGTTCTTC 2843
Query 2946 AACTAAGCTAAAGAAGAATCAATCAAAAATCAA-TAGAGTTGCTGCTGAGACCAGGAGTA 3004
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 2844 AACTAAACTAAAGAAGAATCAATCAAAAAT-AAGTAGAGTTGCTGCTGAGACCAGGAGTA 2902
Query 3005 TGATACCTTCTTTAATTCCCACGCCTACGAGGAGACTATCGCTTGGGGCA---ATTAGCA 3061
|||||||||| ||||||| ||||||||||||| | ||||||||||||| ||||||
Sbjct 2903 TGATACCTTCGCTAATTCCGACGCCTACGAGGACATTATCGCTTGGGGCGGCTATTAGCT 2962
Query 3062 CACCAGGACAAACTTCCTCAAGGCATAACAACAGTACAGTAGTTGTGAAGAAGAGACAAA 3121
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2963 CGCCAGGACAAACGTCCTCAAGGCATAACAACAGTACAGTAGTTGTGAAGAAGAGACAAA 3022
Query 3122 ATCCCAAGTAA 3132
|||||||||||
Sbjct 3023 ATCCCAAGTAA 3033
Score = 1153 bits (624), Expect = 0.0
Identities = 736/789 (93%), Gaps = 12/789 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACCGAGCAACAAGATTCGCAACTCTGTTTAGC-ATCGATTCTGGAGGATTTTCT 59
|||||||| |||||||||||||| ||||| ||||| || | |||||||||||||||||||
Sbjct 1 ATGGCGACGGAGCAACAAGATTCACAACTTTGTTTGGCGA-CGATTCTGGAGGATTTTCT 59
Query 60 TAAACAACG-AA-A-T--A-TTCGCGTTGGTGCGGA---TTCGAGCTCGAAAAAGGCCGA 110
||||||||| || | | | || ||||||||| ||| |||||||| |||||| |||||
Sbjct 60 TAAACAACGAAACATTCAAGTTAGCGTTGGTGTGGATTCTTCGAGCTTGAAAAAAGCCGA 119
Query 111 TGAAACTTTTGGAGGAAGGGATTTGCCAGTAGATCCTTCAGACTTGAGAAGGTATGAAGC 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGAAACTTTTGGAGGAAGGGATTTGCCAGTAGATCCTTCAGACTTGAGAAGGTATGAAGC 179
Query 171 AGCAAGGTGGGTAAGAAACACACTTGGTGTAGTTGGAGGAAGAGATTTGCCAGCTGATCC 230
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 AGCAAGGTGGGTAAGGAACACACTTGGTGTAGTTGGAGGAAGAGATTTGCCAGCAGATCC 239
Query 231 TTCAGAGGATGATTTCAGAATTGCATTAAGAAGTGGAATTTTGCTCTGCAATGTCCTCAA 290
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TTCAGAGGAAGATTTTAGAATTGCATTAAGAAGTGGAATTTTACTCTGCAATGTCCTCAA 299
Query 291 CAGAGTTAAACCTGGTGCTGTACCAAAAGTCGTTGAAGCTCCAAATGATCCTCTTGTTAA 350
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 300 CAGAGTTAAACCTGGTGCTGTCCCAAAAGTCGTCGAAGCTCCAAATGATCCTCTTGTTAA 359
Query 351 CCAAGACGGTGCAGCTCTATCTGCGTTTCAGTACTTTGAGAATCTTCGAAATTTTCTTGT 410
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 TCAAGACGGTGCAGCTCTATCTGCGTTTCAGTACTTTGAAAATCTTCGAAATTTTCTTGT 419
Query 411 GGTTGTGGAGGAAATGGGTATTCCAACGTTTGAAGTCTCCGATTTTGAGAAGGGAGGTAA 470
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTGTGGAGGAAATGGGTATTCCAACGTTTGAAGTCTCCGATTTTGAGAAGGGAGGTAA 479
Query 471 ATCCGCAAGAATTGTGGAGTGTCTTTTGGCTCTCAAGTCATATCGTGAGTGGAAACAGAG 530
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 480 ATCCGCAAGAATCGTGGAGTGTGTTTTGGCTCTAAAGTCATATCGTGAGTGGAAACAGAG 539
Query 531 CGGAGGAAGCGGTACATGGAGATACATTTTGAACTCGAAACCAACCACGTTTGGAATCGC 590
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||
Sbjct 540 CGGAGGAAGCGGTACATGGAGATACATTCTGAACTCAAAACCAACCACGTTTGGCATTGC 599
Query 591 AAAACAATACAGACGTAAAGACTCAGAAGCACATGTGGATGCGGTCACAAGTAGCCCTTT 650
||||||||||| ||| ||||||||||||| || ||||||||| ||||||| ||||||||
Sbjct 600 AAAACAATACAAACGCAAAGACTCAGAAGTACCTGTGGATGCTGTCACAAATAGCCCTTC 659
Query 651 TAGCACTCAATCCAGTGAACAACCTTTGTTTGATCAATCTGATTCTAATACCAAACATGA 710
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 660 TAGCACTCCATCAAGTGAACAACCTTTGTTAGATCAATCTGATTCTAATACCAAAAATGA 719
Query 711 AGGAACTGCCAATTCAATAGATGCCATTGTCCGTGCGGTTTTTTGTGACATGAAGCAAGA 770
|||||||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 720 TGGAACTGCCAGTTCAATAGATGCCATTGTCCGTGCTGTTTTTTCTGATATGAAGCAAGA 779
Query 771 AGA-ATTCC 778
||| |||||
Sbjct 780 AGATATTCC 788
Score = 730 bits (395), Expect = 0.0
Identities = 476/515 (92%), Gaps = 6/515 (1%)
Strand=Plus/Plus
Query 811 TTCCAG--ATTGTGGAAGATATGCTGAAAAGTGTCATGGTAGAATATGAACGTAGATTAG 868
|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 785 TTCCAGTAATTGTGGAAGATATGCTGAAAAGCGTTATGGTAGAATATGAACGTAGATTAG 844
Query 869 CAACACAAAACGAATTGATCCAT-ATGAGCGCGGGAAACAAAGATAAGCTTGGTTGTGAC 927
||||||| ||||||||| | | | |||||||||||||||| |||||||||||| ||| |
Sbjct 845 CAACACAGAACGAATTGCTAC-TGATGAGCGCGGGAAACAGAGATAAGCTTGGCAGTGGC 903
Query 928 GATCTTGGGAGAACTATTTCAGGAAATGAAGAGACGCTAAGTGATGCTTCGTATGGAGAA 987
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 904 GATCTTGGGAGAACTATTTCAGGAAATGAGGAGACGCTAAGTGATGCTTCGTACGGAGAA 963
Query 988 GAAAATTTGTCAAAGATTGTAAACAACAACATGGAAGCTTCAGAAAATAATAATGTTGAT 1047
||||| || || ||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 964 GAAAACGTGACAGAGATTGTAAACAACAACATGGAAGCTTCACAAGATAGTAATGTTGAA 1023
Query 1048 GAA-TCGAAAAGCCAAGATTGTGAGCTCTATGCGATTTCAAAAGAGAAGACCGAGAAGCA 1106
||| | ||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1024 GAATTGGAAAA-CCAAGATTATGAGCTCTATGCAATTTCAAAAGAGAAGACCGAGAAGCA 1082
Query 1107 ACAAATGATAATCGACAGACAACAAACTCATACTGAGGAACTGAAACATGATTTAAAGGC 1166
|||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1083 ACAACTGATAATCGAAAGACAACAAACTCATACTGAGGAACTGAAACATGATCTAAAGGC 1142
Query 1167 TGTAAAAGCAGGTCTCAGTCTCATGCAGATGAAATACCAGCAAGAGTTTACAAGCCTAGG 1226
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1143 TGTAAAAGCAGGTCTCAGTCTCTTGCAGATGAAATACCAGCAAGAGTTTACAAGCTTAGG 1202
Query 1227 CGAGCATTTGCATGGACTTGCTTATGCAGCTACAGGATACCAAAGGGTTCTTGAAGAAAA 1286
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CAAGCATTTGCATGGACTTACTTATGCAGCTACAGGATACCAAAGGGTTCTTGAAGAAAA 1262
Query 1287 CCGAAAACTTTACAATCAAGTCCAAGACCTCAAAG 1321
||| |||||||| ||||| || |||||||||||||
Sbjct 1263 CCGGAAACTTTATAATCAGGTTCAAGACCTCAAAG 1297
Score = 265 bits (143), Expect = 2e-69
Identities = 169/181 (93%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 1362 AGGTAGCATACGAGTTTATTGTCGAGTGAGGCCGTTCTTACCTGGACAAG-AAAGTGTCT 1420
||| |||||| ||||||| |||||||||||||| ||||||||||||| || |||||||||
Sbjct 1296 AGGAAGCATAAGAGTTTACTGTCGAGTGAGGCCATTCTTACCTGGAC-AGAAAAGTGTCT 1354
Query 1421 TAACTACTGTGGATCACTTGGAGGAGTCAAC-CATAACAATTGCAACCCCTTCAAAGTAT 1479
||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||
Sbjct 1355 TAACTACTGTGGATCACTTGGAGGATTCAACTC-TATCAATTGCAACCCCTTCAAAGTAT 1413
Query 1480 GGAAAAGAAGGTCAAAAATCATTCACCTTCAACAAAGTGTTTGGCCCTTCAGCATCACAA 1539
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1414 GGAAAAGAAGGTCAAAAAACATTCACCTTCAACAAAGTGTTTGGCCCTTCAGCATCTCAA 1473
Query 1540 G 1540
|
Sbjct 1474 G 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 155768358015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5