BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311964
Length=3045
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1927 0.0
AT1G09195.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1583 0.0
AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 65.8 2e-09
> AT1G09190.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2966120-2967718 REVERSE LENGTH=1599
Length=1599
Score = 1927 bits (1043), Expect = 0.0
Identities = 1168/1229 (95%), Gaps = 6/1229 (0%)
Strand=Plus/Plus
Query 1820 AATCTTTATCTTTCTTCTCTTCCATGAAAAGCCGCGGAATTTGGGCTGACGAGTATACTT 1879
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 255 AATCTTTATCTTTCTTCTCTTCCATGAAAAGCCGGGGAATTTGGGCTGACGAGTATACTT 314
Query 1880 ACGCGCCTTTGCTCAAATCCTGTTCGTCCCTTTCTGATTTGCGGTTTGGGAAATGTGTTC 1939
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 315 ACGCGCCTTTGCTCAAATCCTGTTCGTCTCTTTCTGATTTGCGATTTGGGAAATGCGTTC 374
Query 1940 ATGGTGAGGTTATTAGAACTGGGTTCCACCGGCTTGGGAAAA-TACGGATTGGGGTGGTG 1998
|||||||| |||| ||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 375 ATGGTGAGCTTATAAGAACTGGGTTCCACCGTCTTGGGAAAATTA-GGATTGGGGTGGTG 433
Query 1999 GAGCTGTATACCTCCGGTGGGAGAATGGGGGATGCGCAGAAAGTGTTCGACGAAATGCCT 2058
||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 434 GAGCTTTATACTTCCGGTGGGAGAATGGGTGATGCACAGAAAGTGTTCGACGAAATGTCT 493
Query 2059 GAAAGAAACGTTGTCGTCTGGAATCTTATGGTTCGCGGGTTCTGTGATTCTGGAGACGTT 2118
|| ||||||||||||||||||||||||||| |||||||||||||||| || || ||||||
Sbjct 494 GAGAGAAACGTTGTCGTCTGGAATCTTATGATTCGCGGGTTCTGTGACTCCGGGGACGTT 553
Query 2119 CAAAGAGGTCTT-AGTTTGTTCAAACAGATGAGCGAAAGAAGCATTGTGTCGTGGAATTC 2177
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GAAAGAGGTCTTCA-TTTGTTCAAACAGATGAGCGAAAGAAGCATTGTGTCGTGGAATTC 612
Query 2178 GATGATATCTAGCTTGTCTAAATGTGGTAGAGATCGTGAGGCTTTGGAGCTTTTCTGCGA 2237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GATGATATCTAGCTTGTCTAAATGTGGTAGAGATCGTGAGGCTTTGGAGCTTTTCTGCGA 672
Query 2238 AATGATTGACCAAGGTTTCGATCCAGACGAGGCAACTGTGGTTACAATGTTGCCAATCTC 2297
||||||||| |||||||| || || || ||||| |||||||||||| | |||||||| ||
Sbjct 673 AATGATTGATCAAGGTTTTGACCCTGATGAGGCGACTGTGGTTACAGTCTTGCCAATTTC 732
Query 2298 TGCATCTCTCGGAGTTTTGGATACCGGAAAATGGATTCATTCTACCGCAGAATCCAGTGG 2357
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TGCATCTCTAGGAGTGTTGGATACCGGAAAATGGATTCATTCTACCGCAGAATCCAGTGG 792
Query 2358 TTTGATTAAAGATTTCATCACCGTGGGAAACGCTTTGGTAGATTTCTACTGCAAAAGCGG 2417
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TTTGTTTAAAGATTTCATCACCGTGGGAAACGCTTTGGTAGATTTCTACTGCAAAAGCGG 852
Query 2418 CGACTTGGAGGCAGCAACGGCTATATTTAGACAAATGCAGCGGAGAAACGTTGTTTCATG 2477
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 853 CGACTTGGAGGCAGCAACGGCTATATTTAGAAAAATGCAGCGTAGAAACGTTGTTTCATG 912
Query 2478 GAACACAATGATATCGGGATCAGCCGTGAACGGAAAGGGAGAATCTGGGATAGACTTGTT 2537
||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 913 GAACACATTGATATCGGGATCAGCCGTAAACGGAAAGGGAGAATTTGGGATAGACTTGTT 972
Query 2538 TGATGCTATGATCGAGGAAGGGAAAGTAGCTCCAAATGAAGCGACATTTTTGGGGGTTTT 2597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TGATGCTATGATAGAGGAAGGGAAAGTAGCTCCAAATGAAGCGACATTTTTGGGGGTTTT 1032
Query 2598 GGCATGTTGCTCATACACAGGTCAGGTGGAGAGAGGAGAGGAATTGTTTGGTTTAATGAT 2657
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1033 GGCATGTTGCTCATACACAGGTCAGGTGGAGAGAGGAGAGGAATTGTTTGGTTTGATGAT 1092
Query 2658 GGAAAGATTCAAACTTGAGCCGAGAACCGAGCATTACGGGGCAATGGTAGATCTAATGAG 2717
||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 1093 GGAAAGATTCAAACTTGAGGCGAGAACCGAGCATTACGGTGCCATGGTAGATCTAATGAG 1152
Query 2718 TAGGAGTGGGCGAATCAGAGAGGCGTTTGAGTTTCTCAGAAATATGCCCGTCAATGCAAA 2777
||| |||||| |||||| |||||||||| ||||||| | |||||||||||| || |||||
Sbjct 1153 TAGAAGTGGGAGAATCACAGAGGCGTTTAAGTTTCTAAAAAATATGCCCGTAAACGCAAA 1212
Query 2778 TGCGGCAATGTGGGGGTCGCTACTCAGTGCTTGTCGCAGCCACGGAGCTGTAAAGCTAGC 2837
||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||
Sbjct 1213 TGCGGCAATGTGGGGGTCGCTGCTCAGTGCTTGTCGTAGCCACGGAGATGTAAAGCTAGC 1272
Query 2838 AGAAGTTGCAGCAATGGAGTTAGTGAAGATTGAGCCAGGGAATTCTGGGAATTATGTGTT 2897
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1273 AGAAGTTGCAGCAATGGAGTTAGTGAAGATTGAGCCAGGGAATTCGGGGAATTATGTGTT 1332
Query 2898 GTTATCTAATTTGTATGCAGAGGAAGGGAGATGGCAAGATGTGGAGAAGGTACGAACGTT 2957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTTATCTAATTTGTATGCAGAGGAAGGGAGATGGCAAGATGTGGAGAAGGTACGAACGTT 1392
Query 2958 GATGAAAAAGAATCGCCTTAGAAAGACTACTGGCCAAAGCACCATTTGCGATGTTTCCAG 3017
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1393 GATGAAAAAGAACCGCCTTAGAAAGTCTACTGGCCAAAGCACCATTTGCGATGTTTC-AG 1451
Query 3018 TCTGAGAAGTAGCTGGTTTT-GTGAATAG 3045
|||||||||||||||||||| || |||||
Sbjct 1452 TCTGAGAAGTAGCTGGTTTTTGTCAATAG 1480
> AT1G09195.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS InterPro
DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain
(InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695).
| chr1:2967940-2971498 REVERSE LENGTH=2041
Length=2041
Score = 1583 bits (857), Expect = 0.0
Identities = 1020/1100 (93%), Gaps = 5/1100 (0%)
Strand=Plus/Plus
Query 1 ATGAACTCAAATTTGCAATCGAGTCCTTTATCATCGCAGCTTTTCACTTCCATTGATATG 60
|||||||| ||| ||| ||||| |||| |||||||| || | ||||| ||||||||| ||
Sbjct 42 ATGAACTCCAATCTGCTATCGAATCCTATATCATCGGAGGTCTTCACCTCCATTGATTTG 101
Query 61 GGAACAAACTCTTTCAAGCTTCTTATAGTCCACGCTGATCCTTCTGGTAGATCTTTCGTT 120
|||||||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 102 GGAACAAATTCTTTCAAGCTTCTAATAGTCCAAGCTGAGCCTTCCGGTAGATCTTTCGTT 161
Query 121 CCGATCGAGAGACTCAGAGAGCCAGTGGTGTTGTCTCGTGAATCTCCGACCTCAATTTCG 180
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 162 CCAATCGAGAGACTCAAAGAGCCAGTGGTGTTGTCTCGTGAATCTCCAACCTCAATTTCG 221
Query 181 TCTCAATCTCAGGCTCGCGCGCTTCAATCTCTACGGAAATTCAAAAGTTTGATTCTCTCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 222 TCTCAATCTCAGGCTCGCGCGCTTCAATCTCTACGGAAATTCAAAAGTTTAATTCTCTCG 281
Query 241 CACAACGTCTCCGTTGACCGGATCCGATGCGTCGCGACGGAAGCGTTACGGCGAGCGGAG 300
||| ||||||| | ||| ||||||||||||| || |||||||| ||||||||||| |||
Sbjct 282 CACCACGTCTCTGGTGATAGGATCCGATGCGTTGCAACGGAAGCCTTACGGCGAGCCGAG 341
Query 301 AATCAGAAAGAGTTTGTGGATGCGGTTTTCGAGGATGTTGGGCTTAAGGTCGATGTCCTT 360
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 342 AATCAGGAAGAGTTCGTGGATGCGGTTTTTGAGGATGTTGGGCTTAAGGTCGATGTGCTT 401
Query 361 TCCGGTGAAGAGGAAGCGAGGTTAGTTTATTTAGGCGTGCTTCAGTTTCTT-CCCGTGTT 419
|| |||||||||||||| |||||||||||||||||||||||||||||| || || |||||
Sbjct 402 TCTGGTGAAGAGGAAGCCAGGTTAGTTTATTTAGGCGTGCTTCAGTTT-TTACCTGTGTT 460
Query 420 TGAGAAATCAGTGTTGTGTGTTGATATTGGAGGTGGTTCTACTGAATTTGTTGTGGGTAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 461 TGAGAAATCAGTGTTGTGTGTTGATATTGGAGGTGGTTCTACTGAATTTGTGGTTGGTAA 520
Query 480 GTGTGGTGATGTGAAGCTTGCTGTTTCTTTGAAGCTAGGTCATGTGAATTTGACACAGAT 539
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 521 GTGTGGTGATGTCAAGCTTGCTGTTTCTTTAAAGCTAGGTCACGTGAATTTGACGCAGAT 580
Query 540 GTTTATGAAAAATGGTGGTACTGGATTGAAGGAAATGAGAGACTATATCCGTCATGTGAT 599
|||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |||
Sbjct 581 GTTTATGAAAAA---TGGTATTGGATTGAAGGAAATGAGAGACTATATTCGTCATGCGAT 637
Query 600 TGATGAGTCTAGGTTAGCAGATAGATTGAAGGAATCCGATGGCTTTGAGATGGTTGTTGG 659
||||||||||||||||||||| | |||||| ||||| ||||| |||||| | ||||| ||
Sbjct 638 TGATGAGTCTAGGTTAGCAGAAAAATTGAATGAATCAGATGGTTTTGAGGTTGTTGTGGG 697
Query 660 ATCTTCTGGAACTATAAGAGCTATTGAGAATGCAGTTTTCTGTGGCTATGGAGCTGATTT 719
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 698 ATCTTCTGGAACTATACGAGCTATTGAGAATGCAGTTTTCAGTGGCTATGGAGCTGATTT 757
Query 720 GTGTGAATTCAATTGGGAAGGGTATAAGAGGGACTGGAGATTTGGCACAAGAGAGCTGAG 779
|||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 758 GTGTGATTTCAATTTGGAAGGGTATAAGAGGGACTGGAGATTTGGTACAAGAGAGCTGAG 817
Query 780 CAGCGTTGTAGCGAAGCTATGCAGTGAAGGAGACGAAGAGCTGATTCGGAGGGAGGGATT 839
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 818 CAGCGTTGTAGCAAAGCTATGCAGTGAAGGAGACGAAGAGCTGATTCGAAGGGAGGGATT 877
Query 840 TTTCAAGAGAAGATCAGAGTTCATTGTTGCTGGGGCCGTATTGTTGGAGGAAATATTCAA 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 878 TTTCAAGAGAAGATCAGAGTTCATTGTTGCTGGGGCTGTATTGTTGGAGGAAATATTCAA 937
Query 900 GGCTCTTGGTATAGAGGATTTGGAGGTCTCAGAGTATGCATTGGCAGAGGGTGTGATTGC 959
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GGCTCTTGGCATAGAGGACATGGAGGTCTCAGAGTATGCATTGGCAGAGGGTGTGATTGC 997
Query 960 TGATTCTCTGGCCAAAGCTTTTGATGGATCATATGATTTGAATGCCAATGCAAGGTGGCG 1019
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 998 TGATTCTCTGGCCAAAGCTTTTGATGGATCATATGATTTAAATGCTAATGCAAGATGGCG 1057
Query 1020 GTCGGTCATGCGGCTTGCCACGCGATTCAATGGTAAAAAGCGAATGACTCACACGATACA 1079
||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct 1058 ATCGGTCATGAGGCTTGCCACGCGTTTCAGTGGTAAAAAGCGAATGACTCATGCGATACA 1117
Query 1080 CTGTGCCAAGATCGCCAAGG 1099
|||||||||||| || ||||
Sbjct 1118 CTGTGCCAAGATTGCAAAGG 1137
Score = 819 bits (443), Expect = 0.0
Identities = 506/536 (94%), Gaps = 6/536 (1%)
Strand=Plus/Plus
Query 1096 AAGGTTATCTTAGACGATAAGGAGCTTGAGTATCTCGAAGCTGCTTGTTTCTTGCACAAT 1155
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1173 AAGGTTATCTTAGACGATAAAGATCTTGAGTATCTCGAAGCTGCTTGTTTCTTGCACAAT 1232
Query 1156 ATCGGAATCATCACAGGGAAAAAGGGATATCATAAGCAGTCTTATCATATCATCAAGAAT 1215
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1233 ATCGGAATCATCACAGGGAAAAAGGGTTATCATAAGCAATCTTATCATATCATCAAGAAT 1292
Query 1216 GGGGATCATCTCCATAGCTACACTGCTGAGGAAATCGAGCTTATAGCTATGCTTGTGAGA 1275
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 GGGGATCATCTCCACAGCTACACTGCTGAGGAAATCGAGCTTATAGCTATGCTTGTGAGA 1352
Query 1276 TACCAAAGAAAAAAGTTTCCCAAGCTTGATCGTGCACCTCTTAAAGACTTCACTGAGGAG 1335
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 1353 TACCAAAGAAAAAAGTTTCCCAAGCTTGATCGTGCACCTCTTAAGGGCTTCACTGGGGAG 1412
Query 1336 GCAAAGCGAAAATTCATAATTTTGTGTTTGATTACACGATTATCGGTTATACTTCAACGT 1395
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1413 GCAAAGCGAAAATTCATAATTTTGTGTTTGATTACACGATTATCAGTTACACTTCAACGG 1472
Query 1396 AATGAGAATATGGATCTCCAAGAAGTTGAATTTCTTGAATCTTCCGAGACCTTCAAACTC 1455
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1473 AATGAGAATATGGATCTCCAAGAAGTTGAATTTATTGAATCTTCCGAGATCTTCAAACTC 1532
Query 1456 GTGCTGAAAGaaaaaaaaCAACACCAGCAACCCGTAGAAGTTGGTTATCAAGATCAAGTA 1515
||||||||| | | ||||||||| |||| ||||| ||||||| |||||||||||||
Sbjct 1533 GTGCTGAAA-AGA-----CAACACCAGGAACCGGTAGAGGTTGGTTGTCAAGATCAAGTA 1586
Query 1516 AACAAAAACTCTAATGAATCCCAACTGGAGAAAGAAGTTGAGCATTTTAAAAGGAGAGTT 1575
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1587 AACAAAAACTCTGATGAATCACAACTGGAGAAAGAAGTTGAGCATTTTAAAAGGAGAGTT 1646
Query 1576 GTTGGTTTCTTTCCTGGAGTTTTTCGTTGGCCAATTTGTGAAGTCAAAAACGTCAG 1631
||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||
Sbjct 1647 GTTGGTTTCTTTCCTGGAGTTTTCCGTTGTCCAATTTGTGAAGTCGAAAATGTCAG 1702
> AT3G62890.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:23246157-23248063 FORWARD LENGTH=1823
Length=1823
Score = 65.8 bits (35), Expect = 2e-09
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 2029 GATGCGCAGAAAGTGTTCGACGAAATGCCTGAAAGAAACGT 2069
||||||| |||| ||||||||||||||||||||||||||||
Sbjct 447 GATGCGCGGAAACTGTTCGACGAAATGCCTGAAAGAAACGT 487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 151403833974
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5