BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311978
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09350.1 | Symbols: AtGolS3, GolS3 | galactinol synthase 3 |... 1640 0.0
> AT1G09350.1 | Symbols: AtGolS3, GolS3 | galactinol synthase 3
| chr1:3019819-3021441 FORWARD LENGTH=1301
Length=1301
Score = 1640 bits (888), Expect = 0.0
Identities = 967/1006 (96%), Gaps = 2/1006 (0%)
Strand=Plus/Plus
Query 1 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 129
Query 61 TTCCTAGCCGGGACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TTCCTCGCCGGAACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 189
Query 121 AAAGCTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTCCCGGTGGATCAC 180
||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 190 AAAACTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTGCCGGCCGATCAC 249
Query 181 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCGCCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 250 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCACCG 309
Query 241 GAGAACCAAACTCAGTTTGCCATGGCTTACTACGTCCTCAACTACTCCAAGCTTCGTATT 300
|| ||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 310 GATAACCAAACTCAGTTTGCTATGGCTTACTACGTCCTCAACTACTCTAAACTTCGTATT 369
Query 301 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 429
Query 361 AACGTAGATCACTTGTTCGATCTTCCCGACGGCAATTTCTACGCCGTTAAAGATTGTTTC 420
||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 430 AACATAGATCACTTGTTTGATCTTCCTGACGGCAACTTCTACGCCGTTAAAGACTGTTTC 489
Query 421 TGCGAGAAGACATGGAGCCACACGCCTCAGTACAAGATCGGCTACTGCCAACAGTGTCCG 480
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 490 TGCGAGAAGACTTGGAGCCACACGCCTCAGTACAAGATTGGCTACTGCCAACAGTGTCCG 549
Query 481 GACAAGGTGACGTGGCCAGAGACAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 540
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 550 GACAAGGTGACGTGGCCTGAGTCAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 609
Query 541 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACTCTCAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 610 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACACTCAAA 669
Query 601 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 729
Query 661 TACAAGCCTATTCCACCAGTATACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 730 TACAAGCCTATTCCACCAGTTTACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 789
Query 721 AACATAGAGCTTGACGAAGCCAAGGTTGTTCATTACTGTGCAGCTGGTGCTAAGCCTTGG 780
|||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 790 AACATAGAGCTTAACGAAGCTAAGGTTGTTCATTACTGTGCAGCCGGTGCTAAGCCTTGG 849
Query 781 AGGTTCACAGGCCAAGAAGAGAA-TATGGAGAGAGAAGACATCAAGATGCTTGTAGAGAA 839
||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 850 AGGTTCACAGGCCAAGAAG-GAAATATGGAGAGGGAAGACATCAAGATGCTTGTAGAGAA 908
Query 840 ATGGTGGGACATTTATAACGACGAGTCACTTGACTACAATAACTTTAATGTGCATTGCGG 899
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 909 ATGGTGGGACATTTACAACGACGAGTCTCTTGACTACAAAAACTTTAATGTGCATTGCGG 968
Query 900 ACAAAAAGAAGATGTCCACAAGAAACAGCAAACACTTCCACAGTTCTTTACAGAATTGTC 959
||||||||||||||| |||| ||||| | |||| |||||||||||||||||||| |||||
Sbjct 969 ACAAAAAGAAGATGTTCACAGGAAACCGAAAACCCTTCCACAGTTCTTTACAGATTTGTC 1028
Query 960 TGAAGCTGATGTGCTTCAATGCACCAAAGCTCCATCCGCGGCTTAG 1005
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1029 TGAAGCTGATGTGCTTCAATGTGCCAAAGCTCCATCCGCGGCTTAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5