BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311987
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09440.1 | Symbols: | Protein kinase superfamily protein | ... 2108 0.0
AT1G56720.1 | Symbols: | Protein kinase superfamily protein | ... 869 0.0
> AT1G09440.1 | Symbols: | Protein kinase superfamily protein
| chr1:3045513-3047893 REVERSE LENGTH=1593
Length=1593
Score = 2108 bits (1141), Expect = 0.0
Identities = 1257/1314 (96%), Gaps = 3/1314 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGGACTTAAGATCTGGCAAGCCATCGTTATCGCCATTGCGCTGTTCACCATTGTC 60
||| |||||||||||||||||||||||||| ||||| ||||||| ||| ||| |||||||
Sbjct 193 ATGGCTGGACTTAAGATCTGGCAAGCCATCTTTATCACCATTGCACTGATCATCATTGTC 252
Query 61 ATACTCTCTGTTCTTTCATTTTGTCTCATTTGGAAAAAGAAATCAAGAAGATCCAAAACC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTACTCTCTGTTCTTTCATTTTGTCTCATTTGGAAAAAGAAATCAAGAAGATCCAAAACC 312
Query 121 TTAAGTCTTCCCATCATCCAAACCCCTGTGGTGTCAAAGGAGATCAAGGAAGTCAGAATT 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 313 TTAAGTCTTCCCATCATACAAACCCCTGTGGTGTCAAAGGAGATCAAGGAAGTCAGGATC 372
Query 181 GAGCA---TGTCTCAACGAGTAGTAACTTCGACCCTCAGGACGAAAACAACAATGAATCT 237
||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 373 GAGCATGTTGTCTCAACGAGTAGTAACTTCGATCCTCAGGATGAAAACAACAATGAATCT 432
Query 238 GACAAATTCTTGCTTAATTTGGATATGGAGAAGAAGACAGAGAATGGTTTGAGTAGTAGC 297
||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 433 GACAAATTCTTGCTTAATTTGGAAATGGAGAAGAACAGAGAGAATGGTTTGAGTAGTAGC 492
Query 298 CGGTCTGGTTCAGGCAAAGAAGGTTATCTATGTGTTGCAAACCGGTCTTCTTCATCATTG 357
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 493 CGGTCTGGTTCAGGCAAAGAAGGTTATTTATGTGTTGCAAACCGGTCTACTTCATCATTG 552
Query 358 TATGAGATGGCTACACCATCACCATCACCTCTTTCCGGTTTACCTGAGTCACATCTTGGA 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 553 TATGAGATGGCTACACCATCACCATCACCTCTTTCTGGTTTACCTGAGTCACACCTTGGA 612
Query 418 TGGGGTCATTGGTTTACTCTGAGAGATCTTGAAATAGCAACAAACAGATTCTCAAAGGAA 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 613 TGGGGTCATTGGTTTACTCTGAGAGATCTTGAGATAGCAACAAACAGATTCTCAAAGGAA 672
Query 478 AATGTGATTGGTGAAGGAGGATATGGAATTGTATACCGAGGAGAGTTGGTCAATGGGTCT 537
|||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| |
Sbjct 673 AATGTGATTGGTGAAGGAGGCTATGGAGTTGTTTACCGAGGCGAGTTGGTCAATGGGAGT 732
Query 538 CATGTCGCCGTGAAAAAGATCCTGAACCACTTGGGACAAGCTGAGAAAGAGTTTAGAGTA 597
| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 733 CTTGTTGCCGTGAAAAAGATCCTAAACCACTTGGGACAAGCAGAGAAAGAGTTTAGAGTA 792
Query 598 GAGGTTGATGCTATTGGTCATGTGCGTCACAAGAACTTGGTACGGCTTCTAGGATACTGC 657
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 793 GAGGTAGATGCTATAGGTCATGTGCGTCACAAGAACTTGGTACGTCTTCTAGGATACTGC 852
Query 658 ATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAATGGGAACCTCGAAGAA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 853 ATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAATGGGAACCTTGAAGAA 912
Query 718 TGGCTTCACGGAGCAATGAAACATCACGGATATCTAACTTGGGAAGCTCGAATGAAAATT 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 913 TGGCTTCACGGAGCAATGAAACATCATGGATATCTAACTTGGGAAGCTCGAATGAAAGTT 972
Query 778 CTCACTGGCACATCCAAGGCTCTCGCATATCTACACGAGGCAATCGAACCAAAAGTAGTG 837
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 973 CTCACTGGAACATCCAAGGCTCTTGCATATCTACACGAGGCAATCGAACCAAAAGTGGTG 1032
Query 838 CATAGAGACATCAAGTCAAGCAATATCTTGATCGATGATAGATTCAACGCAAAGATTTCG 897
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1033 CATAGAGACATCAAGTCGAGCAACATCTTGATCGATGATAGATTCAATGCAAAGATTTCT 1092
Query 898 GATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCATGTGACTACTCGAGTCATG 957
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1093 GATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCATGTGACTACTAGAGTCATG 1152
Query 958 GGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATACCGGACTTTTGAATGAAAAGAGT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 GGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATACCGGACTTTTGAATGAAAAGAGT 1212
Query 1018 GATGTGTACAGCTTTGGTGTCTTGGTCTTAGAAGCAATAACCGGAAGAGATCCTGTGGAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GATGTGTACAGCTTTGGTGTCTTGGTCTTAGAAGCAATAACCGGAAGAGATCCTGTGGAT 1272
Query 1078 TACGCGCGTCCTGCTAATGAGGTGAATCTAGTTGAGTGGTTGAAAATGATGGTAGGATCT 1137
|||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1273 TACGCGCGGCCTGCTAATGAGGTGAATTTGGTTGAGTGGTTGAAGATGATGGTAGGATCT 1332
Query 1138 AAGAGATTAGAAGAAGTCATTGATCCAAACATAGCGGTTAGGCCAGCGACTAGAGCACTG 1197
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1333 AAGAGATTAGAAGAAGTCATTGATCCAAACATAGCAGTTAGGCCAGCGACTAGAGCACTG 1392
Query 1198 AAACGAGTACTTCTTACAGCACTTAGATGCATTGATCCTGATTCTGAAAAGAGACCTAAA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AAACGAGTACTTCTTACAGCACTTAGATGCATTGATCCTGATTCTGAAAAGAGACCTAAA 1452
Query 1258 ATGAGCCAAGTTGTTCGTATGCTCGAGTCTGAGGAATATCCCATACCAAGAGAG 1311
||||| |||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1453 ATGAGTCAAGTTGTGCGTATGCTGGAGTCTGAGGAATATCCTGTACCAAGAGAG 1506
Score = 143 bits (77), Expect = 5e-33
Identities = 85/89 (96%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1358 AGGAGCGGAGAGTGCGCAGAACTCAAGAGGAAAACTCAGATACCGATAGAAGCACACCGG 1417
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||
Sbjct 1505 AGGAGCGGAGAGTGCGCAGAACGCAAGAGGAAAACTCGGATACCGATAGAAGCAGACCGG 1564
Query 1418 TTTCAAGATCACAGAGCAAGAGACAGTAA 1446
|||||||||||||||||||||||| ||||
Sbjct 1565 TTTCAAGATCACAGAGCAAGAGACTGTAA 1593
> AT1G56720.1 | Symbols: | Protein kinase superfamily protein
| chr1:21263420-21265620 REVERSE LENGTH=1750
Length=1750
Score = 869 bits (470), Expect = 0.0
Identities = 819/984 (83%), Gaps = 38/984 (4%)
Strand=Plus/Plus
Query 344 CTTCTTCATCATTGTATGAGATGGCTACACCATCACCATCACCTCTT-TCCGGTTTACCT 402
||||||||||||||||| | || || | | | | ||||| || || || ||||| |||
Sbjct 480 CTTCTTCATCATTGTATAATATTGC-A-A-C-T--CCATCTCC-ATTGTCTGGTTTGCCT 532
Query 403 GAGTCACATCTTGGATGGGGTCATTGGTTTACTCTGAGAGATCTTGAAATAGCAACAAAC 462
|| || || ||||| ||||| || ||||||||| ||||||||||||||| |||||| |||
Sbjct 533 GAATCTCACCTTGGTTGGGGACACTGGTTTACTTTGAGAGATCTTGAAACAGCAACTAAC 592
Query 463 AGATTCTC-AAAGGAAAATGTGATTGGTGAAGGAGGATATGGAATTGTATACCGAGGAGA 521
|||||||| ||| || ||||| || |||||||| || || || |||| ||| |||||||
Sbjct 593 AGATTCTCTAAA-GAGAATGTTATAGGTGAAGGCGGTTACGGTGTTGTCTACAGAGGAGA 651
Query 522 GTTGGTCAATGGGTCTCATGTCGCCGTGAAAAAGATCCTGAACCACTTGGGACAAGCTGA 581
||| | ||||| ||| ||| || || |||||||| || ||||| ||||||||||||||
Sbjct 652 GTTAATGAATGGAACTCCTGTTGCAGTTAAAAAGATTCTTAACCAGTTGGGACAAGCTGA 711
Query 582 GAAAGAGTTTAGAGTAGAGGTTGATGCTATTGGTCATGTGCGTCACAAGAACTTGGTACG 641
|||||||||| |||| |||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 712 GAAAGAGTTTCGAGTCGAGGTTGATGCTATCGGTCATGTGCGGCACAAGAACTTGGTTCG 771
Query 642 GCTTCTAGGATACTGCATTGAAGGCACAAACAGGATATTGGTTTATGAGTATATGAACAA 701
|||||| || |||||||||||||||||| |||||||||||||||| || ||| |||| ||
Sbjct 772 GCTTCTTGGTTACTGCATTGAAGGCACACACAGGATATTGGTTTACGAATATGTGAATAA 831
Query 702 TGGGAACCTCGAAGAATGGCTTCACGGAGCAATGAAACATCACGGATATCTAACTTGGGA 761
||| ||| | ||| |||||||||| |||||||||| ||| || |||||||||||||||||
Sbjct 832 TGGAAACTTAGAACAATGGCTTCATGGAGCAATGAGACAACATGGATATCTAACTTGGGA 891
Query 762 AGCTCGAATGAAAATTCTCACT-GGCACATCCAAGGCTCTCGCATATCTACACGAGGCAA 820
||| | ||||| |||| | | |||||||| || ||||| |||||||| || || ||||
Sbjct 892 AGCAAGGATGAAGGTTCTGA-TCGGCACATCAAAAGCTCTTGCATATCTGCATGAAGCAA 950
Query 821 TCGAACCAAAAGTAGTGCATAGAGACATCAAGTCAAGCAATAT-CTTGATCGATGATAGA 879
| || ||||||||||||||||||||||||||||||||||| || || |||| |||| ||
Sbjct 951 TTGAGCCAAAAGTAGTGCATAGAGACATCAAGTCAAGCAACATTCT-GATCAATGAC-GA 1008
Query 880 -TTCAACGCAAAGATTTCGGATTTTGGCCTTGCCAAGTTACTTGGAGATGGGAAAAGCCA 938
|||||||||||| |||| |||||||||||||| ||||| ||||| | ||| ||||||||
Sbjct 1009 ATTCAACGCAAAGGTTTCAGATTTTGGCCTTGCTAAGTTGCTTGGTGCTGGAAAAAGCCA 1068
Query 939 TGTGACTACTCGAGTCATGGGAACATTTGGGTATGTTGCTCCTGAGTATGCGAATAC-C- 996
|||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || |
Sbjct 1069 TGTGACAACTCGAGTGATGGGAACATTTGGGTACGTTGCTCCTGAATATGC-AA-ACTCA 1126
Query 997 GGACTT-TTGAATGAAAAGAGTGATGTGTACAGCTTTGGTGTC-TTGGTCTTAGAAGCAA 1054
|| || || ||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1127 GGG-TTGTTAAATGAAAAGAGTGATGTCTACAGCTTTGGTGTTGTTC-TCTTAGAAGCAA 1184
Query 1055 TAACCGGAAGAGATCCTGTGGATTACGCG-CGTCCTGCTAATGAGGTGAATCTAGTTGAG 1113
| || ||| |||| ||||||||||||| | ||||||||| |||||||||||||||| ||
Sbjct 1185 TCACAGGACGAGACCCTGTGGATTACG-GACGTCCTGCTCATGAGGTGAATCTAGTGGAC 1243
Query 1114 TGGTTGAAAATGATGGTAGG-ATCTAAGA-GATTAGAAGAAGTCATTG-ATCCAAACATA 1170
|||||||| |||||||| || | | |||| ||| ||| ||||| | || |||||||||||
Sbjct 1244 TGGTTGAAGATGATGGTTGGGA-C-AAGACGATCAGAGGAAGT-AGTGGATCCAAACATA 1300
Query 1171 GCGGTTAGGCCAGCGACTAGAG-CACTGAAACGAG-TACTTCTT-ACAGCACTTAGATGC 1227
| || | |||| | || || | |||||||||||| | ||| || || || || |||||
Sbjct 1301 GAAGTGAAGCCACCAACAAG-GTCACTGAAACGAGCT-CTT-TTGACGGCTCTAAGATGT 1357
Query 1228 ATTGATCCTGATTCTGAAAAGAGACCTAAAATGAGCCAAGTTGTTCGTATGCTCGAGTCT 1287
||||||| ||||| || ||| | || || |||||||||||||| |||||||| ||||||
Sbjct 1358 GTTGATCCAGATTCGGATAAGCGGCCGAAGATGAGCCAAGTTGTACGTATGCTTGAGTCT 1417
Query 1288 GAGGAATATCCCATACCAAGAGAG 1311
|| ||||| ||||| |||||||||
Sbjct 1418 GAAGAATACCCCATTCCAAGAGAG 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5