BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311988
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09450.1 | Symbols: | Protein kinase superfamily protein | ... 1823 0.0
> AT1G09450.1 | Symbols: | Protein kinase superfamily protein
| chr1:3049024-3053112 FORWARD LENGTH=2096
Length=2096
Score = 1823 bits (987), Expect = 0.0
Identities = 1120/1183 (95%), Gaps = 14/1183 (1%)
Strand=Plus/Plus
Query 586 ACTTCAGTTTTCCGGCTCATCCCCAGCTGTGATGACAGCTTGGCTGCCGAGGATGTGCCT 645
||||||||||||||||||||||| ||||| ||||| | |||||||||||| |||||||||
Sbjct 664 ACTTCAGTTTTCCGGCTCATCCCGAGCTGCGATGAGAACTTGGCTGCCGAAGATGTGCCT 723
Query 646 GTTAGAAAAATCAAGATGGAAGCAATCGACCTTGAAGATGAGCTGAAGCGGCTGTCTTTG 705
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 724 GTTAGAAAAATCAAGATGGAATCAATCGACCTTGAAGATGAGCTGAAGCGACTGTCTTTG 783
Query 706 ACATCTGATCTAATCCCCACTCATCAAGATTTTGATCAGCCATTTCTTGATCTATTGTCC 765
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 784 ACATCTGATCTAATCCCCACTCATCAAGATTTTGATCAGCCAATTCTTGATCTATTGTCC 843
Query 766 GCCTGTGGACAGACGCAACCATCAAACTTCATGGAAGCATTCTCTAAATTCTGTGAACCT 825
||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 844 GCCTGTGGACAGATGCGACCATCAAACTTCATTGAAGCATTCTCTAAATTCTGTGAACCT 903
Query 826 GAAAGCATTGTCAAGATTGGTGAAGGTACATATGGGGAGGCTTTTCGGGCTGGTTCTAGT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GAAAGCATTGTCAAGATTGGTGAAGGTACATATGGGGAGGCTTTTCGGGCTGGTTCTAGT 963
Query 886 GTCTGTAAAATAGTTCCAATTGATGGAGACGTCAGGGTTAATGGGGAAGTACAGAAGAGA 945
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 964 GTCTGTAAAATAGTTCCAATTGATGGAGACTTCAGGGTTAATGGGGAAGTACAGAAGAGA 1023
Query 946 GCTGACGAACTACACGAGGAAGTGATACTCTCATGGACTCTTAATAAACTAAGAGAATGT 1005
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1024 GCTGACGAACTACTTGAGGAAGTGATACTCTCATGGACTCTTAATCAACTAAGAGAATGT 1083
Query 1006 GAGACTGA-AGCTCAAAATTCT-TGCCCAACGTTCATAAAAACTCAAGATATAAAAGTAT 1063
|||||| | |||||| |||| | ||||| |||| |||||||||||||||||||||| |||
Sbjct 1084 GAGACT-ACAGCTCAGAATT-TGTGCCCGACGTACATAAAAACTCAAGATATAAAATTAT 1141
Query 1064 GTCAAGGTCCCTATGACCCTATACTGATAAAAGCATGGGAAGAATGGGATGCAAAACATG 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 GTCAAGGTCCCTATGACCCTATACTGATAAAAGCATGGGAAGAATGGGATGCAAAACATG 1201
Query 1124 GCTCTGAGAATGATCACCCAGATTTCCCGGAAAAACAACGTTATGTCATGTTTGTTCTGG 1183
| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 1202 GGTCTGAGAATGATCACCCAGATTTTCCGGAGAAACAATGTTATGTCATGTTTGTTCTGG 1261
Query 1184 AACATGGTGGCAAAGACCTTGAAAGCTTTGTTCTTTTGAACTTTGGTGAAGCCCGGAGCT 1243
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1262 AACATGGTGGCAAAGACCTTGAAAGCTTTGTTCTTTTGAACTTTGATGAAGCAAGGAGCT 1321
Query 1244 TATTGGT-CACG-----GCTGGCCTGGCTGTTGCCGAAGCTGGTTTTGAGTTTGAGCACA 1297
|| |||| || | ||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 1322 TACTGGTTCAGGCCACCGCTGGCCTGGCTGTTGCTGAAGCTGCTTTTGAGTTCGAGCACA 1381
Query 1298 GAGACCTGCACTGGGGAAACATTCTACTGAGTCGTAATAACTCG-AGTACTCTGCCTTTT 1356
| ||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||
Sbjct 1382 GGGACCTGCACTGGGGAAACATTCTTCTCAGTCGTAATAACTCGGA-TACTCTGCCTTTT 1440
Query 1357 ATTCTCGAAGGGAAA-CAAGTTTTCATCAAAACTTTTGGAGTGCAGGTATCCATAATCGA 1415
||||| || |||||| ||||||| |||||||||||| ||||| ||| |||||||||||||
Sbjct 1441 ATTCTTGA-GGGAAAACAAGTTTGCATCAAAACTTTCGGAGTACAGATATCCATAATCGA 1499
Query 1416 CTTTACTCTTTCAAGAATCAATACAGGTGAAAAGATACTCTTTCTGGACCTTACTTGTGA 1475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1500 CTTTACTCTTTCAAGAATCAATACAGGTGAAAAGATACTCTTTCTGGACCTTACTTCTGA 1559
Query 1476 TCCATACCTTTTCAAAGGACCAAAAGGAGATAAACAATCAGAAACTTACAGAAAAATGAA 1535
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1560 TCCATACCTTTTCAAAGGACCAAAAGGAGATAAACAATCGGAAACTTACCGAAAAATGAA 1619
Query 1536 GGCAGTTACTGAAGATTACTGGGAAGGAAGCTTTGCTCGAACAAATGTTCTCTGGCTAAT 1595
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GGCGGTTACTGAAGATTACTGGGAAGGAAGCTTTGCTCGAACAAATGTTCTCTGGCTAAT 1679
Query 1596 TTATCTCGTGGATATCTTACTTACCAAGAAGTCATTTGAACGGTCTTCAAAAGACGAAAG 1655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1680 TTATCTCGTGGATATCTTACTTACCAAGAAGTCATTTGAACGGTCTTCAAAACACGAAAG 1739
Query 1656 AGAACTACGGTCACTGAAGAAGCGGATGGAGAAGTATGAATCAGCTAAAGAGGCTGTTTT 1715
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1740 AGAACTACGATCACTAAAGAAGCGAATGGAGAAGTATGAATCAGCTAAAGAGGCTGTGTC 1799
Query 1716 AGATCCTTTCTTCTCAGATATGTTGATGGACCAAATATCATGA 1758
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 AGATCCTTTCTTCTCAGATATGTTGATGGACCAAATATCATGA 1842
Score = 915 bits (495), Expect = 0.0
Identities = 555/585 (95%), Gaps = 0/585 (0%)
Strand=Plus/Plus
Query 1 ATGGGACAGAGAGTTGATCTTTGGTCTGAGGTCATGAAATCCGAGGAAGAAGACGGAGAT 60
||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 43 ATGGGGCAGAGAGTTGATCTATGGTCTGAGGTCATTAAATCTGAGGAAGAAGACGGAGAT 102
Query 61 ATACCCAAGATTGAAGCCGTTTATCAGAGAAGAAAGAAACCTGAGAAATCCTCCGAACCT 120
||||| |||||||||||||||| ||||||||||||||| ||||| |||||||| ||| ||
Sbjct 103 ATACCTAAGATTGAAGCCGTTTTTCAGAGAAGAAAGAAGCCTGATAAATCCTCAGAAGCT 162
Query 121 GTAAATTTAGGATGGTTGGTCAAAGGGGCTCGTACTAGTTCGGTCAATGGACCTAAGAGA 180
|| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 163 GTCAATTTTGGCTGGTTGGTGAAAGGGGCTCGTACTAGTTCGGTCAATGGACCCAAGAGA 222
Query 181 GATAGCTGGGCTCGTTCACTTTCCACCAGAGGGAGAGAGAGTATTGCAGTGCGCGCTTAT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATAGCTGGGCTCGTTCCCTTTCCACCAGAGGGAGAGAGAGTATTGCAGTGCGCGCTTAT 282
Query 241 GTCAACAATCAGCCTCAAAAGAAGCCAGCCAGGAGAAATAAGCCCGCTATTCCAAAGGGA 300
||||||||||||||||| |||||| ||||| ||||||| |||||| ||||||||||||||
Sbjct 283 GTCAACAATCAGCCTCAGAAGAAGGCAGCCGGGAGAAAAAAGCCCCCTATTCCAAAGGGA 342
Query 301 AAAGTTGTTAAAGCTCCAGACTTCCAGAAAGAGAAGGAATACTTTCGTGATATTGATGCT 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 343 AAAGTTGTTAAAGCTCCAGACTTCCAGAAAGAGAAGGAGTACTTTCGTGATATTGATGCT 402
Query 361 TTTGAGCTTCTGGAAGAGAGTCCTTCTCCCAATAAATCTAGTACATGGACCCTGGGAGAA 420
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 403 TTTGAGCTTCTAGAAGAGAGTCCTTCTCCCAATAAATCTAGTACATGGACCATGGGTGAA 462
Query 421 CAAGTTGTTCCTGAGATGCCACATCTGTCCACAAGATTAGAAAAATGGCTAATTTCAAAG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 463 CAAGTTGTTCCTGAGATGCCACATCTGTCCACAAGATTAGAAAAATGGCTAATTTCGAAG 522
Query 481 AAGTTAAATCGTACTTGTGGTCCTTCGAGCACACTCTCTAAGATACTTGAAAACTCAGCC 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAGTTAAATCATACTTGTGGTCCTTCGAGCACACTCTCTAAGATACTTGAAAACTCAGCC 582
Query 541 ACACACCAGGAGTCAACATGTGATAATGATGCCTTTGATTCATTG 585
| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 583 ATACACCAGGAGTCAGTATGTGATAATGATGCCTTTGATTCATTG 627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5