BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311997
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09550.1 | Symbols: | Pectinacetylesterase family protein |... 1668 0.0
> AT1G09550.1 | Symbols: | Pectinacetylesterase family protein
| chr1:3089733-3092327 REVERSE LENGTH=1240
Length=1240
Score = 1668 bits (903), Expect = 0.0
Identities = 1026/1086 (94%), Gaps = 6/1086 (1%)
Strand=Plus/Plus
Query 10 TTCAACGATTTCAATGGAACAAATGCAAATGTCCTGATGGTAGGACTCACTCTCGTCCAA 69
|||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 158 TTCAACGAGTCCAATGGAACAAATGCAAATGTCCTGATGGTAGGACTCACGCTCGTCCAA 217
Query 70 GCCGCTGCTGCTAAAGGAGCGGTGTGTCTGGATGGGTCAGTGCCTGGATATCATTTGTAT 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 218 GCCGCTGCTGCTAAAGGAGCGGTGTGTCTGGATGGGTCAGTGCCTGGATATCATTTGTGT 277
Query 130 CGCGGGTATGGTTCAGGAGCTAACAACTGGATCATTCAGTTGCAGGGAGGTGCATGGTGT 189
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 278 CGCGGGTATGGTTCAGGAGCAAACAACTGGATCATTCAGTTGCAGGGAGGTGCATGGTGT 337
Query 190 GACAGCATACAAAATTGTCAGAACCGTAAAAGGAGTGGTTATGGATCATCTACCTTAATG 249
|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 338 GACAGCATACAAAACTGTCAGAGCCGTAAAGGGAGTGGTTATGGATCATCTACCTTAATG 397
Query 250 GAGAAAGAGGTGGCGTTTTTAGGATTACTAAGCAATAAAGCGGCTGAAAATCCAGACTTT 309
||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 398 GAGAAAGAGTTGGCATTTTTAGGATTACTAAGCAATAAAGCCGCTGAAAATCCAGACTTT 457
Query 310 TACAATTGGAACAAAGTAAAAGTCCGGTATTGTGATGGTGCATCCTTTAG-CGGTGATAG 368
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 458 TACAATTGGAACAAAGTAAAAGTCCGGTATTGTGATGGTGCATCCTTT-GATGGTGACAG 516
Query 369 CGAAAACAAGGCGGCGCAACTTCAGTTTAGAGGAAAGCGTATATTTTTAGCTGTCATGGA 428
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 517 CGAAAACAAGGCGGCACAACTTCAGTATAGAGGAAAGCGTATATTTTTAGCTGTCATGGA 576
Query 429 AGATTTGATGGCACAGGGAATGCGTCAGGCAAAACAGGCTTTGCTCAACGGATGTTCTGC 488
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 577 AGATTTGATGGAAAAGGGAATGCGTCAGGCAAAACAGGCTTTGCTCAGCGGATGTTCTTC 636
Query 489 CGGGGGTCTTTCAGCGATTTTACGATGCGATGATTTCAGTAATTTGTTTCCTCCTACCAC 548
||||||||||| || |||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 637 TGGGGGTCTTTCTGCCATTTTACGATGCGATGATTTCAATAACTTGTTTCCTCCTACCAC 696
Query 549 CAAAGTAAAATGCATGAGCGATGCTGGCTTCTTCCTCGACGCCGTTGATGTATCTGGAGG 608
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 CACAGTAAAATGCATGAGCGATGCTGGCTTCTTCCTCGACGCCGTTGATGTATCTGGAGG 756
Query 609 TCATTCTTTAAGGCGTATGTATTCTGGTGTCGTGAACACTCAGGGTTTGCAAAACACTCT 668
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 757 TCATTCTTTAAGGCGTATGTATTCTGGTGTTGTGAACACTCAGGGTTTGCAAAACACACT 816
Query 669 TCCTCCCACTTGTACAAGCCATATTAAACCAACTTTGTGTTTTTTCCCTCAATACATAAT 728
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 817 TCCTCCCACTTGTACAAGCCATATCAAACCATTTTTGTGTTTTTTCCCTCAATACATAAT 876
Query 729 CAACCAAGTCAAGACCCCGTTGTTTATTCTCAACTCGGGATTTGATTCGTGGCAGATTGG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CAACCAAGTCAAGACCCCGTTGTTTATTCTCAACTCGGGATTTGATTCGTGGCAGATTGG 936
Query 789 AAATAGTTTAGCTCCACCATCTGCTGATCCAA-A-TGGTAGTTGGCGTAACTGCAGCTCC 846
|||||||||||| ||||||||||||||| || | ||| ||||||| ||||||||| |
Sbjct 937 AAATAGTTTAGCCCCACCATCTGCTGAT--AAGAGTGGCAGTTGGCATAACTGCAGTTTT 994
Query 847 AGCTTCAGGTGCACTGCCTCTCAGAAGCAGTTCTTGGATGGTTTCAAGATGAGCATGTTA 906
||||| ||||||||||||||||||| ||| ||||| || |||||||||||||||||||||
Sbjct 995 AGCTTTAGGTGCACTGCCTCTCAGATGCACTTCTTAGAAGGTTTCAAGATGAGCATGTTA 1054
Query 907 AATGCGGTGAAGACCTTTTCCAAGTTTAGCAAGAACGGAGTGTTAATTACCTCTGGATGG 966
||||| ||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1055 GATGCGTTGAAGACCTTTTCGAAGTTTAGCAAGAATGGAGTTTTAATTACCTCGGGATGG 1114
Query 967 GCTCATTGTCAAGCGGAGAGACAAGATACTTGGTTTCCTGGAAACTCTGGTGCGGGTAAA 1026
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 1115 GCTCATTGTCAAGCGGAGAGACAAGATACTTGGTTTCCTGGATACTCTGGAGCGGGCAAA 1174
Query 1027 GTTAAGGGGATTGCTGTGGCTGTTGGAGATTGGTATTTCGAAAGAATAAAAAAGAAAAGC 1086
| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 1175 GCTAAGGGGATTGCTGTGGCTGTTGGAGATTGGTATTTCGAAAGAACAAAACAGAATAGC 1234
Query 1087 TCATAG 1092
||||||
Sbjct 1235 TCATAG 1240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5