BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312030
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09870.1 | Symbols: | histidine acid phosphatase family pro... 2499 0.0
> AT1G09870.1 | Symbols: | histidine acid phosphatase family protein
| chr1:3205741-3208598 FORWARD LENGTH=1694
Length=1694
Score = 2499 bits (1353), Expect = 0.0
Identities = 1428/1465 (97%), Gaps = 2/1465 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACGAAGACTGTTTGGATCATACTGTTGTGTCTATTTGTTGTTTCACAGGCGGAT 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 77 ATGGCGACGAAGACTGTTTGGATCATACTGTTGTGTCTATTTGTTGTTTCCCAGGCAGAT 136
Query 61 CAGGGTTTCGATGTTCGTCATCACCTCTCCACCGTCACCAGATACTCTGTTTCGAAAGAT 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 137 CAGGGTTTCGATGTTCGTCATCACCTCTCCACCGTCACCAGATACTCTACTTCGAAAGAT 196
Query 121 GTTACCCAAAATTTGATTGAAGGGTCGAGTGTTCCCAGTGAGTGTACACCTATCCACCTT 180
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 197 GTTACCCAAAATTTGATTGAAGGGTCGAATGTTCCTAGTGAGTGTACACCTATCCACCTT 256
Query 181 AACCTTGTGGCTAGGCATGGAACTCGTTCTCCGACCAAGAAACGGTTGCGGGAATTGGAG 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 257 AACCTTGTGGCTAGGCATGGAACTCGTTCTCCGACCAAGAAACGATTGCGGGAATTGGA- 315
Query 241 AA-TTTGGCTGGTAGGTTAAAAGAATTGGTAAGAGATGCAGAAGCTAGGAAATTGCCTTC 299
|| ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 316 AAGTTTGGCTGGTAGGTTTAAGGAACTGGTAAGAGATGCAGAAGCTAGGAAATTGCCTTC 375
Query 300 AGACGAAATTCCTGGATGGTTAGGACAATGGAAATCTCCCTGGGAAGGAAAAGTGAAAGG 359
|||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 376 AGACAAAATTCCTGGATGGTTGGGACAATGGAAATCTCCTTGGGAAGGAAAAGTGAAAGG 435
Query 360 CGGGGAGCTGATCAGGCAAGGGGAGGAAGAGTTGTACCAACTGGGAATACGGGTTCGGGA 419
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 436 TGGGGAGCTGATCAGGCAAGGGGAGGATGAGTTATACCAACTGGGAATTCGGGTTCGGGA 495
Query 420 AAGGTTTCCTAGTTTGTTTGAAGAGGATTACCACCCTGATGTCTATACAATAAGAGCTAC 479
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 496 ACGGTTTCCTAGTTTGTTTGAAGAGGATTACCATCCTGATGTCTATACAATAAGAGCTAC 555
Query 480 GCAGATTCCTCGGGCATCTGCAAGTGCTGTAGCATTTGGAATGGGGTTATTCAGTGAGAA 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 GCAGATTCCTAGGGCATCTGCAAGTGCTGTAGCATTTGGAATGGGGTTATTCAGTGAGAA 615
Query 540 AGGAAATCTGGGACCAGGCCGTAATAGAGCATTCGCTGTCACAAGCGAAAACCGTGCAAG 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 616 AGGAAATCTGGGACCAGGCCGTAATAGAGCATTCGCTGTCACTAGCGAAAACCGTGCCAG 675
Query 600 TGATACAAAGTTGAGATTTTTTGAATGTTGTCAAAACTACAAGAGCTATAGAAAAGCTAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGATACAAAGTTGAGATTTTTTGAATGTTGTCAAAACTACAAGAGCTATAGAAAAGCTAA 735
Query 660 AGAGCCTGCTGTGGATAAGCTCAAGGAACCTGTTCTGAATAAGATTACAGCTTCAGTTGC 719
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 736 AGAGCCTGCTGTGGATAAGCTCAAGGAACCTGTTCTGAATAAAATTACAGCTTCCGTTGC 795
Query 720 AAAGAGATATGATTTAAAATTCACGAAACAGGACATTTCTTCTCTCTGGTTTCTGTGCAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AAAGAGATATGATTTAAAATTCACGAAACAGGACATTTCTTCTCTCTGGTTTCTGTGCAA 855
Query 780 GCAGGAAGCATCATTGCTTAATGTAACTAATCAAAGTTGTGAACTTTTCACGCCATCAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GCAGGAAGCATCATTGCTTAATGTAACTAATCAAAGTTGTGAACTTTTCACGCCATCAGA 915
Query 840 GGTTGCTTTGCTAGAATGGACAGATGACTTGGAAGTGTTTCTCCTCAAAGGTTATGGCAA 899
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 916 GGTTGCTTTGCTGGAATGGACAGATGATTTGGAAGTGTTTCTCCTCAAAGGTTATGGAAA 975
Query 900 TTCCTTGAACTACAAAATGGGAGTTCCACTACTAGAAGATGTTTTGCATTCAATGGAAGA 959
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 976 TTCCTTGAATTACAAAATGGGAGTTCCACTTCTAGAAGATGTTTTGCATTCAATGGAAGA 1035
Query 960 AGCTATCAAGGCCCGGGAAGAAAAGCTCCCACCTGGAAGTTACGAAAAAGCAAGGCTTAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AGCTATCAAGGCCCGGGAAGAAAAGCTCCCACCTGGAAGTTACGAAAAAGCAAGGCTTAG 1095
Query 1020 GTTTGCACATGCCGAAACAATAGTTCCCTTTTCTTGTCTTCTTGGGCTTTTCCTTGATGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 GTTTGCACATGCCGAAACAATAGTTCCCTTTTCTTGTCTTCTTGGGCTTTTCCTTGATGG 1155
Query 1080 ATCTGAGTTTGAGAAAATACAGAAGGAGAAACCTTTGGAACTCCCTCCACAGCCTCCCAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 ATCTGAGTTTGAGAAAATACAGAAGGAGAAACCTTTGGAACTCCCTCCACAGCCTCCCAA 1215
Query 1140 AACCAGGGATTTTAGAGGCAGCACCATGGCTCCTTTTGGTGGGAACAACATTCTTGTCCT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 AACCAGGGATTTTAGAGGCAGCACCATGGCTCCTTTTGGTGGGAACAACATTCTTGTCCT 1275
Query 1200 ATACAGTTGTCCCGCAGAATCCTCTCCCAAATACTTCGTTCAGGTTCTGCACAATGAGCA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 ATACAGTTGTCCCGCAGAATCCTCTCCCAAATACTTCGTTCAGGTTCTGCACAATGAGCA 1335
Query 1260 TCCTATTGCAGTTCCAGGTTGTGATGGAAAAGATTTCTGTTCTCTTGAAGATTTCAAGGC 1319
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1336 TCCTATTGCAGTGCCAGGTTGTGATGGAAAAGATTTCTGTCCTCTTGAAGATTTCAAGGC 1395
Query 1320 CAAAGTGGTAACCCCTCATCTAAAGCATGCTTTTGACAACCTCTGCAATGCTGATCTAAA 1379
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1396 CAAAGTGGTAACTCCTCATCTAAAGCATGCTTTTGACAACCTTTGCAATGCTGATCTAAA 1455
Query 1380 TGACCTGAAAGAGAAGCCTGCATCAAGTAAGTTATCTATACTGTCAAGTTGGCTGTTTGG 1439
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TGACCTGAAACAGAAGCCTGCATCAAGTAAGTTATCTATACTGTCAAGTTGGCTGTTTGG 1515
Query 1440 GTCAAGCCAGGATACCGAGCTCTAG 1464
||||||||| |||||||||||||||
Sbjct 1516 GTCAAGCCACGATACCGAGCTCTAG 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5