BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312036
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09932.1 | Symbols: | Phosphoglycerate mutase family protei... 1175 0.0
> AT1G09932.1 | Symbols: | Phosphoglycerate mutase family protein
| chr1:3230450-3233109 REVERSE LENGTH=1131
Length=1131
Score = 1175 bits (636), Expect = 0.0
Identities = 738/787 (94%), Gaps = 7/787 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTATGTGGAGCT---ATGTTGCGCCTCTCATCGCCTAATTTCAAAACCCTTCAT 57
||||||||||||||| || ||| ||||||||||||||||| |||||||||||||||||
Sbjct 83 ATGGATTTATGTGGAACTCAGATGCTGCGCCTCTCATCGCCTCATTTCAAAACCCTTCAT 142
Query 58 TTGGTGAGGCATGCACAAGGAATCCACAATATAGCATTAGAAGAGGAGGGAGAGAAACCT 117
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 143 TTGGTGAGGCATGCACAAGGAGTCCACAATATAGCATTAGAAGAGAAGGGAGAGAAACCT 202
Query 118 GAATCAGAAAAGCTGTTTGATGCCCAACTCTCTCCAAAAGGTTTGCAACAGGTTTCTGAA 177
|||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||| |||
Sbjct 203 GAATCAGAAAAGCTTTTTGACGCCCACCTTTCTCCAAAGGGTTTGCAACAGGTTTCGGAA 262
Query 178 AGGCGCAACCAAATCCTTGAATCAGGATTACTAAACACTATCGAGTTAGTGATTTCCTCT 237
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 263 AGGCGCAACCAAATCCTTGAATCAGGATTACTTAACACTGTCGAGTTAGTGATAACCTCT 322
Query 238 CCGCTGCGCAGAGCAATGGAAACTTCAATAGGAATATTTAGGGGGCAAGAAGATGTAAAT 297
|||||| ||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 323 CCGCTGTGCAGAGCAATGGAAACTTCAATAGGAATATTTAGGGGACAAGGATATGTAAAT 382
Query 298 ATATCCGACGACTTTCCAAAAGCTAACAACTTTCCTCCAATTGTAGCACTTGAGATCTGT 357
|||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 383 ATATCCGAAGACTTTGCAAAAGCTAACAACTTCCCTCCAATTGTAGCACTTGAGATCTGT 442
Query 358 AGAGAACGGATGGGACTCTATCCGTGTGATCGTAGAGCAAGTATAACTACTCGCCGCACT 417
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 443 AGAGAACGCATGGGACTCTATCCATGTGATCGTAGAGCAAGTATAAGTACTCGCCGCACT 502
Query 418 TGTTTTCCTGAGATCGACTTTACAATGATAGAGAGTGATGAAGATGCTCTATGGCAAGAC 477
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 503 TTTTTTCCTGAGATCGACTTTACAATGATAGAGAGTGATGAAGACGCTCTATGGCAAGAC 562
Query 478 AAGGAAAGGGAAAAACTAGAGGATGTTGCTACTAGAGGTCTTCACTTTGTTAAATGGTTA 537
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 563 AAGGAAAGGGAAAAATTAGAAGATGTTGCTACTAGAGGTCTTCACTTTGTTAAATGGTTA 622
Query 538 TGGGAGAGACCAGAAAACGAAATAGCAATTGTGAGCCATGGGATTTTCCTGCAACAAACA 597
||||||||||||||||| || ||||||||||| ||||| ||||||||| |||||||||||
Sbjct 623 TGGGAGAGACCAGAAAAAGAGATAGCAATTGTAAGCCACGGGATTTTCTTGCAACAAACA 682
Query 598 CTTCGTGCGCTGCATGAAAAAGTTGGCATACCTCTTGAAGATAGTCTCCTTACTAGGTTT 657
||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 683 CTTTGTGCGCTGCATGGAAAAGTTGGCATACCTCTTGAAGATAGTCTCCTTACAAGGTTT 742
Query 658 GCCAATTGTGAACTCCGGTCAATTCGGATAGAAAAAAGTGACATGGAAGCGGATACATTA 717
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 743 GCCAATTGTGAACTCCGGTCGATTCGGATAGAGAAGAGTGACATGGAAGCGGATACATTA 802
Query 718 ACGACTTGTAATTGTAGAAATTACGTTACTCCACCTTCAACTTCC----ATTCACACGCT 773
| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 803 ATGACTTGTAACTGTAGAAATTACGTTACTCCACCTTCAACTTCCTTCCATTCACACGCT 862
Query 774 TGAATAG 780
|||||||
Sbjct 863 TGAATAG 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5