BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312053
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10095.1 | Symbols: | Protein prenylyltransferase superfami... 1812 0.0
> AT1G10095.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr1:3297324-3300443 REVERSE LENGTH=1507
Length=1507
Score = 1812 bits (981), Expect = 0.0
Identities = 1183/1279 (92%), Gaps = 20/1279 (2%)
Strand=Plus/Plus
Query 1 ATGAGACAAGGACCATGTTCTGAAGAAGATTGCTTTAGCTTGTTGAAGCAGTTCGAGCAT 60
|||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 91 ATGAAACAAGGACCATCTTCTGAAGATGATTGCTTTAGCTTGTTGAAGCAGTTCGAGCAT 150
Query 61 GTTCTTGAAGCTGACCCTCTTATTGATGAAGTAGGGTTTATTCACCCCTCACAGTTCAAC 120
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 151 GTCCTTGAATCTGACCCTCTTATTGATGAAGTAGGGTTTATTCACCCCTCACAGTTC-AC 209
Query 121 C-TGCTGGATGAAGAAGCAGGTTCCGCCAATGTGTATCAAAATGAACTCCAGCCTAACAA 179
| |||| ||| |||||||||||| | |||| || ||| |||||||||||||
Sbjct 210 CATGCTCGATAAAGAAGCAGGTTTCTCCAA--TG------AAT----TCCAGCCTAACAA 257
Query 180 TGGAACCTCAAGAAAATTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATTCT 239
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 258 TGGAACCTCAAGCAAGTTCTGGAATCAAGATCACAAATTGGGAATATCAACTGATATACT 317
Query 240 TGTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTTGCGTTTGAGGAGTACAAA-C 298
||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
Sbjct 318 TGTTCAATTATGTAAAGATGCCAAACATGTGTTTCTGCTAGCGCTTCAGGAGTACAAATC 377
Query 299 GCCATGGAAACGCTTGTAATGAGTCTCAAATTGAGAATTTCTCTTGTTCCCCCGGTACTC 358
|||||||||||| ||| |||||||||| ||| ||||| |||||||||| ||| ||| ||
Sbjct 378 -CCATGGAAACGCATGTGATGAGTCTCAGATTAAGAATATCTCTTGTTCTCCCTGTATTC 436
Query 359 CCGAGAGTGAAGTTATGAAGCATAGCCAAGCTGTTTTGCTGATAAGTTCAGACTTTGGAA 418
|||||||||| || ||||||||||||||| ||||||||||| | || |||||||||||||
Sbjct 437 CCGAGAGTGACGTCATGAAGCATAGCCAATCTGTTTTGCTGTTGAGCTCAGACTTTGGAA 496
Query 419 CTGCATGGAATGCTAGGAAGTTGATATTATCAAAAAAGGATCAACTTTCGGCATTCACGG 478
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |
Sbjct 497 CTGCATGGAATGCTAGGAAGTTGATTTTGTCAAAAAAGGATCACCTTTCGGCATTCACAG 556
Query 479 AAGATCTTCGTCTCTCTGGGCTCATTCTTTCAAATT-CTCATAAGAGTGAGTCAACATGG 537
|||| |||||||| |||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 557 AAGAACTTCGTCTTTCTGGGCTCATTCTTTCAAATTCCCCA-AAGAGTGAGTCAACATGG 615
Query 538 AGCCATAGAAGGTGGATAATTAAGATGATTTCTCAGAGATTTTCTACACCACAAGAGATT 597
|||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 616 AGCCATAGAAGGTGGATAATTAAGATGATTTCCCAGAGTTTTTCTACACTACAAGAGATT 675
Query 598 ATAACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAGAGATCAAAGATGAACTATCGT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 ATAACCAAAGAATCTGAGTTAGTGGAATCAATAGGCGAGAGATCAAAGATGAACTATCGT 735
Query 658 GCATGGTATCACCGTTGCTGGTTGGTTTCCTACATGGCAATTGAGCAGGTGATACAAGAG 717
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 736 GCATGGTATCACCGTTGCTGGTTGGTTTCTTACATGACAATTGAGCAGGTGATACAAGAG 795
Query 718 TTGAACAAATCTAAAAGGTGGGCCAGGCTTCATGTAGCCGATAGTTCTTGCTTCCATTAT 777
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 796 TTGAACAAATCTAAAAGATGGGCTGGGCTTCATGTAGCCGATAGTTCTTGCTTCCATTAT 855
Query 778 CGTAGACGGCTGATGCTCAAGATTTTGGAGTCACTTTATGTGAAAGGAGGCAATGCTTAT 837
|| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct 856 CGCAGACGGCTGATGCTCAAGATTCTGGAGTCACTTTATGTGAAAGGAAGCAGCGCTTAT 915
Query 838 GATAAATCCGAGGCACGTAAAATCTGGAAGGAAGAGCTGGATTGGAACAAAGAATTGGTA 897
|||||| | |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 916 GATAAAACTGAGGCACGCAAAATCTGGAAGGAAGAGCTGGATTGGAATGAAGAATTGGTA 975
Query 898 GAACGTTACGTGGGACGAGAGGCCCTATGGCTTCACCGGCGGTTCCTGTCTCTTAATTGG 957
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 976 GAACGTTACGTGGGACGAGAGGCACTATGGCTTCACCGGCGGTTCCTCTCTCTTAATTGG 1035
Query 958 ATAATGTATTTCGCTTGCAATGATTCAGATGTTTCACCTGAACCCGGAGAGAGTACCATT 1017
||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||
Sbjct 1036 ATAATGTATTTCGCTTGCAATCATTCAGATGCTTCACCTGAAACCGGAGAGAGTATTATT 1095
Query 1018 ATGAATGAAGAAATTGCCATCTTCATTGATAATGAGATCCGTCTTGTAGAATT-TTCTAT 1076
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 1096 ATGAATGAAGAAATTGCCATCTTCATTGATAATGAGATCCGTCTTCTAGA-TTCTTCTAT 1154
Query 1077 GACTGTTCCGGATACCAAATTTGAAGATTTTCAAGCTCAAGCATTGCATGCTGCTGTCTA 1136
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GACCGTTCCGGATACCAAATTTGAAGATTTTCAAGCTCAAGCATTGCATGCTGCTGTCTA 1214
Query 1137 CATGCTATGGCTGACAAAGAAAATGCCAGAATTGTGGAGAATGGTTGAGGAGAAGCTTGG 1196
|| ||||||||||||||||| || |||| | ||||||||||| | ||||||||||||||
Sbjct 1215 CACGCTATGGCTGACAAAGAGCATTCCAGTACTGTGGAGAATGCTCGAGGAGAAGCTTGG 1274
Query 1197 AACAGAGAAAGTGAAGTGTGTAATGAGCACAATTGCTCAAGAGAGACCCTCACTTTTGCA 1256
|||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| ||||
Sbjct 1275 AACAGAGAAAGTGAAGTGTGTACTGAACACAATTGCTCAAGAGAGACCCTCGCTTCTGCA 1334
Query 1257 TCATTTGGTGAATGTTTGA 1275
||||||||||||||| |||
Sbjct 1335 TCATTTGGTGAATGTCTGA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5