BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312054
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10110.1 | Symbols: | F-box family protein | chr1:3302742-3... 1664 0.0
AT1G10100.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 217 2e-55
> AT1G10110.1 | Symbols: | F-box family protein | chr1:3302742-3304092
FORWARD LENGTH=1351
Length=1351
Score = 1664 bits (901), Expect = 0.0
Identities = 1110/1207 (92%), Gaps = 29/1207 (2%)
Strand=Plus/Plus
Query 10 GATGGTGATACTCCGAATTGGTCGGAACTTGTCACAGACATCTTATCATTGGTTTTCAAG 69
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 10 GATGATGGTACTCCGAATTGGTCGGAGCTTGTCACAGACATCTTATCATTGGTTTTCAAG 69
Query 70 CACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACTTTGCT 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACTTTGCT 129
Query 130 TCCAAATCATCCTCACCTAGAAAAAACCATACTCCGTGGCTGATTCTCTACGAAGACACG 189
|||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 130 TCCAAATCATCCTCACCTAGAAAAAATCATACTCCGTGGTTGATTCTCTACCAAGACACG 189
Query 190 CACTGGCTCATGTTTAATTCGGAAGAAGAAAAGTTTTACAGAACACAAAACCTAGGTCGC 249
|||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||
Sbjct 190 CACTGGCTCATGTTTAATTCCGATGAAGAAAAGTTTTACAGAACAGTATACCTAGGTCGC 249
Query 250 TTTGCCGAGTGTCGTGGCGTGGCGACTTGTGGGAGTTGGGTCTTGGTCTTTGACAAGGAA 309
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 250 TTTGCCGAGTGTCGTGGCGTGGCGTCTTGTGGGAGTTGGGTCTTGGTCTTTGACAAGGAA 309
Query 310 ATAAATTTCTACATCATTAATCCCTTCACGCCAGAGCTCATTCGTCTCCCACCTCTTGAA 369
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 310 ATCAATTTCTACATCATTAATCCCTTCACGCCACAGCTCATTCGTCTCCCACCTCTTGAA 369
Query 370 TATTCAAACAGCGGCACAAAGTTCGAGAGACCCGGTAACTATATTTTCCACCTACTCTTC 429
|||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 370 TATTCAAACACCGGCACAAAGTTCGAGCGACCCGGTAACTATGTATTCCACCTACTCTTC 429
Query 430 GACGATTTC-A--GAATAAACAGTGTAGTAGTGGGGAATTCGGTTCTGTGGGTAGACGAA 486
|||||| | | ||| || | ||| | ||||||||||||||||| ||||||||||||||
Sbjct 430 GACGATCGCCACAGAACAAGCCGTGCAATAGTGGGGAATTCGGTTTTGTGGGTAGACGAA 489
Query 487 AAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATGTCATCCGGGTCCCTAC 546
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 490 AAAACCAAAGACTACTTAGTTGTGTGGTCGTACAAAGAGGCATTTGTTCCGAGTCCCTAC 549
Query 547 ATATATTATTGCAGGAAAAGAGAGCAAGAGTGGTTTGAGATTCCGGCAAGCACTTGTGGG 606
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 550 ATATATTATTGCAGTAAAAGAGGGCAAGAGTGGTTTGAGATTCCGGCAAGCACTTGTGGG 609
Query 607 AAGCTAATCGGGTGTTTGGATATGGCCTACAAAGACGAGAAGCTTTACATACATACTTAC 666
|||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 610 AAGCTATTCCGGTGTTTGGATATGGCCTACAAAGACGAAAAGCTTTACATACTTACTTCC 669
Query 667 AATGGTAGCATCAGAATTTTGGACTTTTCTCTTGGAGACTTGCCTAGACAAATCGACAAT 726
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AATGGTAGCATAAGAATCTTGGACTTTTCTCTTGGAGACTTGCCTAGACAAATCGACAAT 729
Query 727 CATCCATTCTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCGTAGGACGGGAATGAGA 786
||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 730 CATCCATACTCCCATCGACCGTTTGTTACCGAGTTTCCTAATCATAAGATGGGAATGAGA 789
Query 787 CTAACCACGTTTGGAGATGTTGTGATGATCCAATGGGTGACA---GTCACTCACAAAAGA 843
|||||||||| ||| |||||||||||||||||||| |||||| | |||||||||||||
Sbjct 790 CTAACCACGTCTGGGGATGTTGTGATGATCCAATGCGTGACAACAGGCACTCACAAAAGA 849
Query 844 ATCCCGTTCCAAATCTACAAGATGAGTAGCAAAAGAGAGACGAAGGAGTCGTTTCCGGTG 903
| |||||||| ||||| |||| ||||||||| | ||||||||||||||| || | |
Sbjct 850 AGCCCGTTCCGAATCTTCAAGTTGAGTAGCATTACAGAGACGAAGGAGTC-TT-C---T- 903
Query 904 CTAGGGTGGGGCGACGATGCTGCGTACTGGGAGAGAGTGCATTCTTTCGAGGACGAGGAG 963
| | | || | | | | | || |||||| |||||||||||||||||||||||||
Sbjct 904 C-ACGA-GGTG-GT--A-G--G-GT---GGGAGACAGTGCATTCTTTCGAGGACGAGGAG 951
Query 964 TCGTTGGTTTGGGATTTGAGCGTCACTTTACCAACCAAAGGCGTATCGGGAATCAAGAAA 1023
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 952 TCGTTGGTTTGGGATTTGAGCGTCACTTTACCAACCAAAGGCGTATCCGGAATCAAGAAA 1011
Query 1024 GATTCCATATATTTCTGTCACACTTCT-TAT--TCATCTATTCGGGAAGT-TGCTGCCTA 1079
||||||||||||| ||||||||||||| ||| ||||||||||||||| || ||| ||
Sbjct 1012 GATTCCATATATTACTGTCACACTTCTCTATCATCATCTATTCGGGAAACATG-TGCTTA 1070
Query 1080 TGAGATTCCTACGCACAAGATCACTGCATATGAGATTCCTAAGCAGGATATCGAACCTAT 1139
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1071 TGAGATTCCTACGCACAAGATCACTGCATATGACATTCCTAAGCAGGATATCAAACCTAT 1130
Query 1140 TCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTCATTCCTTGTTTTGGTGCTGG 1199
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1131 TCGACACCGCGGCATCTTGATTGGAGAGGCTCGTTGGTTCGTTCCTTGTTTCGGTGCTGG 1190
Query 1200 TGAATAA 1206
|||||||
Sbjct 1191 TGAATAA 1197
> AT1G10100.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:3300697-3301489 REVERSE LENGTH=489
Length=489
Score = 217 bits (117), Expect = 2e-55
Identities = 129/135 (96%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 274 ACTTGTGGGAGTTGGGTCTTGGTCTTTGACAAGGAAATAAATTTCTACATCATTAATCCC 333
|||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 351 ACTTGTGGAAGTTGGGTCTTGGTCTTTGACGAGGAAATCAATTTCTACATCATTAATCCC 292
Query 334 TTCACGCCAGAGCTCATTCGTCTCCCACCTCTTGAATATTCAAACAGCGGCACAAAGTTC 393
||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 291 TTCACGCCACAGCTCATTCGTCTCCCACCTCTTGAATATACAAACAGAGGCACAAAGTTC 232
Query 394 GAGAGACCCGGTAAC 408
|||||||||||||||
Sbjct 231 GAGAGACCCGGTAAC 217
Score = 209 bits (113), Expect = 4e-53
Identities = 132/141 (94%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 5 TCACAGATGGTGATACTCCGAATTGGTCGGAACTTGTCACAGACATCTTATCATTGGTTT 64
||||||||| || | || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 489 TCACAGATGATG-TTCTTCGAATTGGTCGGAGCTTGTCACAGACATCTTATCATTGGTTT 431
Query 65 TCAAGCACTTGAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACT 124
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TCAAGCAGTTTAGCTTTACAGATTTTGCTCGAGCTAAGACCGTTTGTTCGTCGTGGTACT 371
Query 125 TTGCTTCCAAATCATCCTCAC 145
||||||||||||| || ||||
Sbjct 370 TTGCTTCCAAATCCTCGTCAC 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5