BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312058

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10155.1 | Symbols: ATPP2-A10, PP2-A10 | phloem protein 2-A1...   922    0.0  


> AT1G10155.1 | Symbols: ATPP2-A10, PP2-A10 | phloem protein 2-A10 
| chr1:3327637-3328448 REVERSE LENGTH=555
Length=555

 Score =  922 bits (499),  Expect = 0.0
 Identities = 540/559 (97%), Gaps = 5/559 (1%)
 Strand=Plus/Plus

Query  1    ATGTCTGTCCAAAAAGCTGTCAAGAGTTCTTCTCACTACGAGGCAGAATCCAACATGGAA  60
            ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTGTCCAAAAAGCTGTCAAGAG---TTCTCACTACGAGGCAGAATCCAACATGGAA  57

Query  61   CAAGATATTGTTAGAAAAGCATGGGTCTTTAAGCCAAGTGGTCTTAATTTCATATGGGGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   CAAGATATTGTTAGAAAAGCATGGGTCTTTAAGCCAAGTGGTCTTAATTTCATATGGGGA  117

Query  121  GGTGATTCTCGGTATTGGGTCATCCCTAGA-GAAGACAGGACGCCTGCTGAACTAAAGAA  179
            |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  118  GGTGATTCTCGGTATTGGGTCATCCCTA-ACGAAGACAGGACGCCTGCTGAACTAAAGAA  176

Query  180  GGTGAGTTGGTTAGAAGTAACCGGTTCGTACGACAAGATAGAGCCAGGCAAAACATACCG  239
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  177  AGTGAGTTGGTTAGAAGTAACCGGTTCGTACGACAAGATAGAACCAGGCAAAACATACCG  236

Query  240  AATCGGTTTTAAAATCTCACTCACAGCTGATGCAACCGGATGGGACCAAGCTCCAGTTTT  299
            ||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct  237  AATTGGTTTTAAAATCTCGTTCACAGCTGATGCAACCGGATGGGACCAAGCTCCAGTTTT  296

Query  300  CATGTCAGCGAAAATTGGAAAGAAAGGGAAGACAATTTGGAAGAGGATCAAATCGGTTAA  359
            ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  297  CATGTCAGCAAAAATTGGAAAGAAAGGGAGGACAATTTGGAAGAGGATCAAATCGGTTAA  356

Query  360  CAATAACATTGAGAAACTCAAAGGCGGAACCGGACCGGTTAACATACCAGATGAGACTGA  419
            ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  357  CAATAACTTTGACAAACTCAAAGGCGGAACCGGACCGGTTAACATACCAGATGAGACTGA  416

Query  420  TGGTCGGTTTGAGGTCTTTGTCAGTCCCAAGGTAGCAATAAACCAAGACACCAAGCTTCA  479
            ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct  417  TGGTCGGTTTGAGATCTTTGTAAGTCCCAAGGTAGCAATAAACCAAGACACCAAGCTCCA  476

Query  480  ATTTGGTTTGTATGAAGTGTGGACCGGAAAATGGAAGACAGGTTTGTTGATCTATGAAGC  539
            |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  477  ATTTGGTTTGTATGAAGTGTGGACCGGAAAATGGAAAACAGGCTTGTTGATCTATGAAGC  536

Query  540  TTTTGTTGAAGAAGTGTAA  558
            |||||||||||||||||||
Sbjct  537  TTTTGTTGAAGAAGTGTAA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5