BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312099
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10585.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 732 0.0
> AT1G10585.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3493940-3495144 REVERSE LENGTH=761
Length=761
Score = 732 bits (396), Expect = 0.0
Identities = 512/563 (91%), Gaps = 28/563 (5%)
Strand=Plus/Plus
Query 1 ATGGCGAGGGCAAGAGAAATAGGAGATGGAAACTCATCGTCGTTAAGGGAACAACGAAAC 60
|||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 41 ATGGGGAGAGCAAGAGAAATAGGAGAAGGAAACTCATCGTCGTTAAGGGAACAACGAAAC 100
Query 61 CTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTATTCTCTAAACTCTCTTCTCAT 120
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 101 CTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTCTTCTCTATACTTTCTTCTCAT 160
Query 121 GTTTCTCCCACTCGCAAGTTACCAGTGCCTCAACTTATAGATCAAGCGACATCATTCATG 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 161 GTTTCTCCCACTCGCAAGTTACCAGTGCCTCACCTTATAGATCAAGCGACATCATACATG 220
Query 181 ATCCAACTGAAAGACAAGGTAAATTATTTGAAAGAGAAGAAAAGGACATTGGTGCAAGGA 240
|||||| ||||||| || ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 221 ATCCAATTGAAAGAGAATGTAAATTATTTGAAAGAGAAGAAAAGGACATTGTTACAAGGA 280
Query 241 GAACTCGGGAATCTCTATGAAGGGTCGTTTCTTCTGCCGAAACTCAGTCTTCGTTCGCGG 300
||||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||
Sbjct 281 GAACTCGGGAATCTCTACGAAGGGTCGTTTCTTCTACCCAAACTCAGTATTCGTTCGCGG 340
Query 301 GATTCGACCATAGAATTGAATCTGATTATGGATCTAAACATGAAAAGAGTAATGTTACAC 360
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 341 GATTCGACCATAGAAATGAATCTGATCATGGATCTAAACATGAAAAGAGTAATGTTACAC 400
Query 361 GAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAATAATGAGTGCAAATCTTCAGAAC 420
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 401 GAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAGTAATGAGTGCTAATCTTCAGAAC 460
Query 421 TTGAATGATAGGACCACTTACACAATCATAGCCCAGGTACCACATCCACTCATATGTTTG 480
||||||||||||||||||||||||||||||||||||| | | | |||| |
Sbjct 461 TTGAATGATAGGACCACTTACACAATCATAGCCCAGG--C----T--A-TCAT-T----- 505
Query 481 TATGCTATCATTAGTCGGATCGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAA 540
| | | | | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 506 -A-G-T--C----G--G-ATTGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAA 553
Query 541 ATCATTTATGGATATATAT-TTT 562
||||| ||||||||||||| |||
Sbjct 554 ATCATCTATGGATATATATATTT 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5