BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312113
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10700.1 | Symbols: PRS3 | phosphoribosyl pyrophosphate (PRP... 1282 0.0
> AT1G10700.1 | Symbols: PRS3 | phosphoribosyl pyrophosphate (PRPP)
synthase 3 | chr1:3554104-3556503 FORWARD LENGTH=1518
Length=1518
Score = 1282 bits (694), Expect = 0.0
Identities = 778/819 (95%), Gaps = 4/819 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCTATTTCTCCGGCGAATGCAACTACCGCGGCTTCACTCTCCCTGCCTCAATTT 60
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 54 ATGGCGGCTATTTCTCCGGCGAATGCAACCACCGCTGCTTCACTCTCCCTGCCTCAATTT 113
Query 61 AGCTCTAGTTCTTCCTCGCTATCTTCTTCTTCGTCTCCAACGTTTCTTAATTTCAAAACT 120
||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 114 AGCTCAACTTCTTCCTCGTTATCTTCTTCTTCGTCTCCATCGTTTCTTAATTTCAAAACT 173
Query 121 GCTACAGTCAGTAATCGCTGCGTGAAGTGCGGAGTCAGAAGCTTAGAGAACC-CGTCGGG 179
||| ||||||||||||||||| | |||||||||||||||||||||||||||| | || ||
Sbjct 174 GCTTCAGTCAGTAATCGCTGCATCAAGTGCGGAGTCAGAAGCTTAGAGAACCAC-TCTGG 232
Query 180 TCATCGGAGCCTAGATTTCTTATCCAATGGGGATCCGATCAGCCTAATTAATCAGAATTC 239
||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 233 TCACCGGAGCCTCGATTTCTTATCCAATGGGGATCCGATCAGCCTAATTAATCCGAATTC 292
Query 240 GTCGTCTCCTATAACCATGGCCGCGGCGGCGTCGGAATCCGGTCCGAAGTCCTCTAAGCG 299
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 293 ATCGTCTCCTATAACCATGGCCGCGGCGACGTCGGAATCCGGTTCGAAGAGCTCTAAGCG 352
Query 300 CGTCTGTCTCTTCCACAGCGACGAAACTAGAGATCTCGCCGAGAGAATCGTCGCAAAATC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 353 CGTCTGTCTCTTCCACAGCGACGAGACTAGAGATCTCGCCGAGAGAATCGTCGCAAAATC 412
Query 360 TGATTGCATTGAGATACGAAGCATCAATTGGAAGAAATTTGACGATGGATTCCCTAACTT 419
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 413 TGATTGCATTGAGCTACGAAGCATCAATTGGAAGAAATTTGATGATGGATTCCCTAATTT 472
Query 420 GTTCATACAAAACGCTCAAGGCATTCGTGGGCAGCATGTTGCTTTCCTGGCTTCATTTAG 479
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 473 GTTCATACAAAATGCTCAAGGCATTCGTGGGCAGCATGTTGCTTTCTTGGCTTCATTCAG 532
Query 480 TTCACCCGCTGTGATCTTCGAGCAGCTCTCGGTTATTTATGCTCTTCCCAAGCTTTTTGT 539
|||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 533 TTCACCTGCTGTGATCTTCGAGCAGCTTTCGGTTATTTATGCTCTGCCTAAGCTTTTTGT 592
Query 540 TTCTTCATTTACTCTTGTTCTTCCATTCTTTCCTACTGGAACTTCTGAGAGAATGGAAGA 599
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTCTTCGTTTACACTTGTTCTTCCATTCTTTCCTACTGGAACTTCTGAGAGAATGGAAGA 652
Query 600 CGAAGGAGATGTGGCCACTGCTTTCACTCTCGCTAGGATACTCTCAAATATACCGACTTC 659
|||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 653 CGAAGGAGATGTGGCCACTGCTTTTACTCTCGCTAGGATACTCTCTAATATTCCGACTTC 712
Query 660 AAGAGGAGGACCGACTAGCTTAGTGACCTTCGATATACATGCCTTGCAGGAAAGATTCTA 719
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GAGAGGAGGACCGACTAGCCTAGTGACCTTCGATATACATGCCTTGCAGGAAAGATTCTA 772
Query 720 CTTTGGTGATACTATACTTCCATGCTTTGAAAGTGGTATACCATTGCTCAAGAGCAGACT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CTTTGGTGATACTATACTTCCATGCTTTGAAAGTGGTATACCATTGCTCAAGAGCAGACT 832
Query 780 CCAGAGTCTACCTGATTCTGATAACAT-TCAATT-CATT 816
||||||||||||||||||||||||||| || ||| ||||
Sbjct 833 CCAGAGTCTACCTGATTCTGATAACATATCTATTGCATT 871
Score = 327 bits (177), Expect = 1e-88
Identities = 191/198 (96%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 844 ATATCTATTGCATTCCCAGATGATGGAGCATGGAAGCGTTTCCACAAACAACTCCAACAT 903
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 858 ATATCTATTGCATTCCCAGATGATGGAGCATGGAAGCGTTTCCACAAGCAACTCCAACAT 917
Query 904 TATCCAACGATTGTTTGCAACAAAGTAAGAATGGGAGACAAACGAATAGTGCGTATTAAA 963
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 918 TATCCAACGATTGTTTGCAACAAAGTAAGAATGGGAGACAAACGAATAGTGCGTATCAAA 977
Query 964 GAAGGAGACGCCGAAGGAAGGCACGTTGTGATTGTTGATGACTTGGTTCAGTCGGGTGGC 1023
|| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 978 GAGGGAGACGCTGAAGGAAGGCACGTCGTGATTGTTGATGATTTGGTTCAGTCGGGTGGC 1037
Query 1024 ACACTAATCGAATGCCAG 1041
||| ||||||||||||||
Sbjct 1038 ACATTAATCGAATGCCAG 1055
Score = 246 bits (133), Expect = 4e-64
Identities = 135/136 (99%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1275 AGGTGATCCCGCGGAAGGTCTGAGCTATTTCTGGATCACAGACTCGTGTGGAATGACTGT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1154 AGGTGATCCCGCGGAAGGTCTGAGCTATTTCTGGATCACAGACTCGTGTGGGATGACTGT 1213
Query 1335 GAAAGAGGTGATGAATAAACCTCCTTTTGAAGTTCTTAGCCTGGCTGGCTCCATAGCTTC 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GAAAGAGGTGATGAATAAACCTCCTTTTGAAGTTCTTAGCCTGGCTGGCTCCATAGCTTC 1273
Query 1395 TGCTCTTCAAGTTTAA 1410
||||||||||||||||
Sbjct 1274 TGCTCTTCAAGTTTAA 1289
Score = 178 bits (96), Expect = 1e-43
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1072 AAAGTCTTAGCTGCACATGGAGCAGCGAAAATAAGCGCATATGTAACACACGGGATCTTC 1131
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1056 AAAGTCTTAGCTGCACATGGAGCAGCGAAGATAAGCGCATATGTAACACACGGGATCTTC 1115
Query 1132 CCCAAGAGTTCATGGAAACGTTTCAAGCTTGACACCAAAGGT 1173
|||| |||||||||||||||||||||||||||||||||||||
Sbjct 1116 CCCAGGAGTTCATGGAAACGTTTCAAGCTTGACACCAAAGGT 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5