BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312115
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10717.1 | Symbols: | Encodes a Maternally expressed gene (... 340 3e-93
> AT1G10717.1 | Symbols: | Encodes a Maternally expressed gene
(MEG) family protein | chr1:3562180-3562554 FORWARD LENGTH=273
Length=273
Score = 340 bits (184), Expect = 3e-93
Identities = 236/259 (91%), Gaps = 11/259 (4%)
Strand=Plus/Plus
Query 6 ATCATCACATACAACTTTAATCTGCATAATCATGCTCTCCCTCTTTGCTCTGCATGAATG 65
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 6 ATCATCACATACAACTTTAATCTGTATAATCATGCTCTCCCTCTTTGCTCTGCATGAATG 65
Query 66 TG-GCAAGATGGAGGTGAAAGAGATAGGGGGATCGAGCAAAATCTATAT-ACCACCGTGT 123
|| | |||||||||||||||||||||||| |||||||||||||| || | |||| |||||
Sbjct 66 TGAG-AAGATGGAGGTGAAAGAGATAGGGAGATCGAGCAAAATC-ATTTTACCAGCGTGT 123
Query 124 ATCCATGAGACTTGCA--G-TGGTTTCTCACTGAAAAGTGATTGTTGGTGCTGCTTGCAA 180
|| |||||||||||| | ||||||||||||||||| |||||||||||||||||||| |
Sbjct 124 ATGCATGAGACTTGCTCCGGTGGTTTCTCACTGAAAAATGATTGTTGGTGCTGCTTGCGA 183
Query 181 ATTAAA-CATAAAAAAGATCGTTGTTGGAAAGAGAAAGAATTTCCCAACGCTAAGGAGCT 239
||||| | |||| ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 184 CTTAAAAC-TAAACAAGCTCGTTGTTGGAAAGAAAAAGAATTTCCCAACGCTAAGGAGCT 242
Query 240 TTGTTTCGACCAAT-GTCC 257
|||||||| ||||| ||||
Sbjct 243 TTGTTTCG-CCAATTGTCC 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12365866254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5