BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312119

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10745.1 | Symbols:  | Maternally expressed gene (MEG) famil...   411    2e-114


> AT1G10745.1 | Symbols:  | Maternally expressed gene (MEG) family 
protein | chr1:3572710-3573066 FORWARD LENGTH=249
Length=249

 Score =  411 bits (222),  Expect = 2e-114
 Identities = 240/249 (96%), Gaps = 0/249 (0%)
 Strand=Plus/Plus

Query  1    ATGAAATCACAAACACTTCTCATCTCGATATTAATCTTCTCTTTCTTTGCTCTACATCAG  60
            ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  1    ATGAAATCACAAACAGTTCTCATCTCCATATTCATCTTCTCTTTCTTTGCTCTACATCAG  60

Query  61   TGCATGCAGATGGATGTTGGAGAAATAGAGGGCTCGAGCAAGATCTCTATTGGAAAGTGT  120
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  61   TGCATGCAGATGGATGTTGGAGAAATAGAGGGCTCGAACAAGATCTCTATTGGAAAGTGT  120

Query  121  GTCCCTGCCCAATGTGCAGTTAGTTTTTTCAAACGGGATTGTTGGTGTTGTTTTAGAGAT  180
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTCCCTGCCCAATGTTCAGTTAGTTTTTTCAAACGGGATTGTTGGTGTTGTTTTAGAGAT  180

Query  181  CAAACTATGTGTTCGAAAACCCAAAAAGATTGCGAATCCAATCCCCGTTGTCCTCCTTTA  240
            |||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  181  CAAAGTATGTGTTCGAAAACCCAAAAAGAATGTGAATCCAATCCCCGTTGTCCTCCTTTA  240

Query  241  AAGTTATAA  249
            ||||| |||
Sbjct  241  AAGTTTTAA  249



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5