BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312123
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10790.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1439 0.0
> AT1G10790.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2);
Has 78 Blast hits to 78 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:3596360-3597847 FORWARD LENGTH=1011
Length=1011
Score = 1439 bits (779), Expect = 0.0
Identities = 929/1000 (93%), Gaps = 16/1000 (2%)
Strand=Plus/Plus
Query 1 ATGAAAAAGCAGTCGAAGGAGAACGCTCTCGCTCTTCAGCAGGAGAATCTCGACCTTGAG 60
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGAAAAAGCACTCAAAGGAGAACGCTCTCGCTCTTCAGCAGGAGACTCTCGACCTTGAG 60
Query 61 AACCCTGAA-CCT-T-CTCGATCCTCCGGTGGTCGGAGCTGTTCCTCTGCTTTCTCTCGT 117
||||||||| ||| | |||| |||||| || ||||||||||||||||||||||| |||
Sbjct 61 AACCCTGAATCCTCTCCTCGTTCCTCC---GGCCGGAGCTGTTCCTCTGCTTTCTCGCGT 117
Query 118 CTCGTTGGTTTCCGATGTCTCATCGTTTTGGTCCTAAGCTGTGCGATTCTTCTCTCTGCG 177
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTGGTTGGTCTCCGATGTCTCATCGTTTTGGTCCTAAGCTGTGCGATTCTTCTCTCTGCG 177
Query 178 ATCTTCTGGCTGTTTCCGCGTCGATCGGTGTCTGAATTCAAAGCTGATGGGACAGTTAAA 237
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCTTCTGGCTATTCCCTCGTCGATCGGTGTCTGAATTCAAAGCTGATGGGACAGTTAAA 237
Query 238 CTCAATGCTTCAGTACAAGCTTCCTTTAGACTTAAAAAACCAGTTTCTGAAGTTGTTTC- 296
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 238 CTCAATGCTTCAGTACAAGCATCCTTTAGACTTCAAAAACCAGTTTCTGAAGTTGTT-CG 296
Query 297 CCATAAAGGAAA-ACTAGAGCATGATATCCTTCGGAGCATAGGTCTTTCGAACAGCAGCA 355
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 297 CCATAAAGGAAAGA-TAGAGCATGATATCCTTCGGAGCATAGGTCTTTCGAACAACAGCA 355
Query 356 AGGTGACTATACTGTCTCTGAATCAATCAGGTGCATCAAACTACACAGATGTGGAGTTTG 415
|||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 356 AGGTGACTGTTCTGTCTCTGAATCAATCAGGTGCATCTAACTACACAGACGTGGAGTTTG 415
Query 416 CAGTTCTTCCTGTCCCTCCTGACCATGAAATAAGCAATCACTCGTTAAGCTTACTGCGAT 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 416 CAGTTCTTCCTGTCCCTCCTGACCATGAAATAAGCAAACACTCGTTAAGCTTACTGCGAT 475
Query 476 CATCTTTTGTTAAGCTGTTTGCTAAAAGATCGAAGCTGAAACTCACCACAAAAGGTTTCG 535
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 476 CGTCTTTTGTTAAGCTGTTTGCTAAAAGATCGAAGCTGAAACTCACCACATCAGGTTTCG 535
Query 536 GGAAGCCAACTTCTTTTCAGGTTTTGAAATTTCCTGGGGGAATAACTGTAGATCCACTGG 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 GGAAGCCAACTTCTTTTCAGGTTTTGAAATTTCCTGGAGGAATAACTGTAGATCCACTGG 595
Query 596 AGCCTATC-CCTGCCTCTGGACTAGCAATGGTTCTGTTTACCGGTACTATCAAAATTTCG 654
| ||| | |||| ||||||| ||||| |||||||||||| | ||||||||||| ||||
Sbjct 596 AACCTG-CACCTGTCTCTGGAGTAGCACTGGTTCTGTTTAGTGTTACTATCAAAACTTCG 654
Query 655 ATATCTA-AGGTACAAGATAGAG-TGGATCAGCTAAATGGTCAACTTGAGCATATGTTGA 712
||||| | || |||||||||| | |||||| ||||||||||| | ||||||||||||||
Sbjct 655 ATATCAACAG-TACAAGATAG-GCTGGATCTGCTAAATGGTCTATTTGAGCATATGTTGT 712
Query 713 GTTTGGGGCTATATGAGAGTATTCATTTCCAATTCACAAATAAACAAGGATCTACCATAT 772
||||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 713 CTTTGGAGCCATATGAGAGTGTTCATTTCCAACTCACAAATAAACAAGGATCTACCATAT 772
Query 773 CACCACCGGTAACTCTTCAGGTTTGTGTTGCTTTCACCATGAGAAGACATCTTCAGCAGA 832
|||||||| ||||| ||||||||| |||||||||||||||||||| | ||||||| ||||
Sbjct 773 CACCACCGCTAACTTTTCAGGTTTATGTTGCTTTCACCATGAGAAAATATCTTCATCAGA 832
Query 833 GATTGGACCATTTTGCTCAGATCATTCAAACATCCCGTGCTAAAAATCTCGGTCTAGACG 892
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GATTGAACCATTTTACTCAGATCATTCAAACATCCCGTGCTAAAAATCTCGGTCTAGACG 892
Query 893 AGGCAGTTTTTGGAGAAGTCAAGAATATAACTTTCTCAACATACCCGGATGGCAAAGTTC 952
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 893 AGGCAGTTTTTGGTGAAGTCAAGGATATAACTTTCTCAACATACCTGGATGGCAAAGTTC 952
Query 953 TTGATTCTGATTTGGAATTGGCACCAGCGCCAAATCCTTG 992
|||||||||||||||||||||||||||||||| ||||||
Sbjct 953 CTGATTCTGATTTGGAATTGGCACCAGCGCCAACTCCTTG 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5