BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312128
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13780.1 | Symbols: | methionine--tRNA ligase, putative / m... 2148 0.0
> AT4G13780.1 | Symbols: | methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993155-7998515
REVERSE LENGTH=2687
Length=2687
Score = 2148 bits (1163), Expect = 0.0
Identities = 1571/1763 (89%), Gaps = 47/1763 (3%)
Strand=Plus/Plus
Query 16 CCCAAGTTGCCGATCTCTGGCAAA-AGAAATATACTAATCACAAGTGCTCTGCCTTACGT 74
|||||||| |||||| |||| ||| ||||||||||||||||| |||||| ||||||||||
Sbjct 107 CCCAAGTTACCGATCCCTGG-AAAGAGAAATATACTAATCACCAGTGCTTTGCCTTACGT 165
Query 75 CAACAACGTCCCTCATCTCGGAAACATCATTGGATGTGTTCTAAGCGCTGATGTGTATGC 134
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 166 CAACAACGTTCCTCATCTCGGAAACATCATCGGATGTGTTCTGAGCGCTGATGTGTATGC 225
Query 135 TAGATACTGTCGTCTCCGTGGCTATAATGCCATATATATATGTGGGACTGATGAATATGG 194
|||||||||||||||||||||||||||||| || || |||||||| || |||||||||||
Sbjct 226 TAGATACTGTCGTCTCCGTGGCTATAATGCGATTTACATATGTGGAACCGATGAATATGG 285
Query 195 GACTGCTACTGAGACCAAAGCTCTT-GAGGAGAATCGCA-CCCCAAGAGAAATCTGTGAC 252
|||||| ||||||||||||||| || ||||||||| ||| ||||||| ||||||||||||
Sbjct 286 GACTGCAACTGAGACCAAAGCT-TTGGAGGAGAATTGCACCCCCAAG-GAAATCTGTGAC 343
Query 253 AAGTACCATGCTATTCATAAAGAAGTTTATGACTGGTTTGATATTAGTTTTGACCAGTTT 312
||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 344 AAGTACCATGCCATTCATAAAGAAGTTTATGACTGGTTTGGTATAAGTTTTGACAAGTTT 403
Query 313 GGCCGAACTTCAACTCCACAACATACACAAGTGTGCCAAGAAATTTTCAACAAATTGTGG 372
|| ||||||||||||||| |||| || | |||||||||| |||||||||||| ||||||
Sbjct 404 GGGCGAACTTCAACTCCAGAACAGACTGAGGTGTGCCAAGCAATTTTCAACAAGTTGTGG 463
Query 373 GAAAACAAGTTGATTTCAGAGAACACTATACAGCAGCTTTACTGCGATACATGCAACAAG 432
|| ||||||| | ||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 464 GACAACAAGTGGCTTTCAGAGAACACCATGCAGCAGCTTTACTGCGATACATGCAAGAAG 523
Query 433 TTCTTAGCTGACCGGCTTGTTGAGGGTTCCTGT-C---C--ACTATGTAACTATGACTCT 486
||||||||||||||||||||||||||||| ||| | | | |||||| ||||| |||
Sbjct 524 TTCTTAGCTGACCGGCTTGTTGAGGGTTCTTGTCCGTTCGAAGGATGTAATTATGATTCT 583
Query 487 GCTCGTGGAGATCAGTGCGAAAGCTGTGGAAAGCTCCTGAATCCTACTGAACTCATTGCT 546
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 584 GCTCGTGGAGATCAGTGCGAAAAATGTGGAAAGCTCCTGAATCCTACTGAACTTAAAGAT 643
Query 547 CCGAGGTGCAAGGTCTGTCAAACCACA-CCCGAAATTCGCGACACAGACCACCTATTTAT 605
|||| ||||||||||||||||| |||| |||| ||||||||||||||||||||| |||||
Sbjct 644 CCGAAGTGCAAGGTCTGTCAAAACACACCCCG-AATTCGCGACACAGACCACCTGTTTAT 702
Query 606 TGACCTTCCG-AAGCTGAAGGCTCA-GTTGGAAGCGTATATTAATGGGACATCTGTT-CG 662
||| |||||| | ||||| | | | |||||||||||||||||| ||| |||||| |
Sbjct 703 TGAGCTTCCGTTA-CTGAAAGAT-AGGTTGGAAGCGTATATTAAAAAGACCTCTGTTAC- 759
Query 663 TGGATCTTGGAGT-AGAAATGCTGTTCAAACGACAAATGCATGGATTAGGGAAGGGCTTC 721
||||||||||||| | ||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 760 TGGATCTTGGAGTCA-AAATGCTATTCAAACGACAAATGCATGGCTTAGGGATGGGCTT- 817
Query 722 A-ACAGAGATGCATTACAAGGGAT-TTAAAGTGGGGAGTTCCAGTCCCACATGAGAAATA 779
| ||||||||||||||| |||||| || ||||||||||| || |||||||||||||||||
Sbjct 818 AGACAGAGATGCATTACGAGGGATCTT-AAGTGGGGAGTGCCTGTCCCACATGAGAAATA 876
Query 780 TAAGGATAAAGTCTTCTATGTTTGGTTTGATGCTCCTATTGGATACGTCTCAATAACGTC 839
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CAAGGACAAAGTCTTCTATGTTTGGTTTGATGCTCCTATTGGATACGTCTCAATAACGTC 936
Query 840 ATGCTACACATCTGAATGGGAGCAGTGGTGGAAGAATCCTAAGAATGCT-GAGCTTTATC 898
||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||
Sbjct 937 TTGCTACACATCTGAATGGGAGAAGTGGTGGAAGAATCCTGAGAATG-TGGAGCTTTATC 995
Query 899 AGTTTATGGGGAAAGACAATGTGCCATTTCACACTGTGATGTTTCCTTCTACCCAGCTTG 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 996 AGTTTATGGGGAAAGACAATGTGCCATTTCACACTGTGATGTTTCCCTCTACCCAGCTTG 1055
Query 959 GAACTGGGGAAAATTGGACATTGATGAAGACAGTCAGTGTGACTGAATATTTGA-CATAC 1017
|||||| ||||||||||||| | ||||||||| ||||||||||||||||||| | | ||
Sbjct 1056 GAACTGAGGAAAATTGGACACTCATGAAGACAATCAGTGTGACTGAATATTTAAAC-TAT 1114
Query 1018 CAAGGCGGAAAGTTCTCCAAGAGTAAAGGTGTTGGATTGTTTGGTAATGATGTAAAAGAT 1077
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1115 GAAGACGGAAAGTTCTCCAAGAGTAAAGGTGTTGGAGTGTTTGGTAATGATGTAAAAGAT 1174
Query 1078 ACAAATATCCCTGTAGAAGTATGGAGATACTACTTGCTGATCAACAGGCCTGAGGTATCT 1137
|||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 1175 ACAAATATACCTGTCGAAGTGTGGAGATACTACTTGCTGACCAACAGGCCTGAGGTGTCT 1234
Query 1138 GACACATCGTTTGAATGGGAA-GATTTGCAAGCAAAACTGAATGACGAGTTGTTGAAAAA 1196
|||||||||||| |||| | |||||||||||||||||||||| ||||||| ||| ||
Sbjct 1235 GACACATCGTTTTCATGG-ACTGATTTGCAAGCAAAACTGAATGGCGAGTTGCTGAGCAA 1293
Query 1197 CCTAGGCAATTTTGTTAATCGAGTTGTGAGTTTTATAGCAAAGCCAGAAAATATAGGTTA 1256
||||||||| ||||||||||||||| ||||||||||||||||||| || ||| ||||||
Sbjct 1294 CCTAGGCAACTTTGTTAATCGAGTTCTGAGTTTTATAGCAAAGCCTGATAATGCAGGTTA 1353
Query 1257 TGGGTCTATCATTCCTGATGCTCCTGGTGCTGAATCTCAT-CAACTAACGATGTCACTAA 1315
|||||| ||||||||||||||| || ||||||||||||| | |||| | |||||
Sbjct 1354 CGGGTCTGTCATTCCTGATGCTCATGATGCTGAATCTCATTCTT-TAACAAAATCACTG- 1411
Query 1316 GTG-AAAAGGTTGGGAAA-TTGGTGG-AGGAGTATGTTGAAGCCATGGAAAAGGTTAAGC 1372
| | ||||||||| ||| || |||| || ||||||||||||||||||||||||||||||
Sbjct 1412 GCGGAAAAGGTTGA-AAAGTTTGTGGCAG-AGTATGTTGAAGCCATGGAAAAGGTTAAGC 1469
Query 1373 TCAAGCAGGGGCTGAAAACTGCTATGCTCATTTCGGGTGAAGGGAACGCAT-ACTTGCAG 1431
|||||||||| ||||||||||||||||| ||||| | ||||||||| || ||||||||
Sbjct 1470 TCAAGCAGGGACTGAAAACTGCTATGCTGATTTCAAGCGAAGGGAACT-ATTACTTGCAG 1528
Query 1432 ACCAGCGAATTTTGGAAACTTTACAAGGAAGATAAACCTTCCTGTGCAATTGTTGTAAGA 1491
| ||| ||||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 1529 GCAAGCCAATTTTGGAAACTTTACAAGGAAGATAAACCTTTGTGTGCAGTTGTTATAAGA 1588
Query 1492 AGTGCTGCTGGTTTAGTACACCTTCTTGCACGATTGTTAGAACCTTTCATGCCATCTTTT 1551
| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 1589 ACTGCTGCTGGTTTAGTACACCTTCTTGCTCAATTGTTAGAACCTTTCATGCCATCCTTT 1648
Query 1552 TCTCATGAGGTATTCAAACAGCTAAATTTGCCTCCACATTTTTCACTCTCCGACGAAAGA 1611
||| ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1649 TCTTGTGAGGTATTTAAACAGCTAAATTTGCCTCCACAATTTTCTCTCTCCGACGAGAGG 1708
Query 1612 GGAGAGGTATTACAAGCAAGTAGACCTTGGGAGATTCTGCCTCCAAGCCACAGGATAGGC 1671
||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 1709 GGAGAGGTATTACTAGCAAGTAGACCATGGGATATTCTGCCTCCTAGCCACAGGATAGGC 1768
Query 1672 ACTCCTCAACCATTGTTCAAGGAACTG-AAAGATGAAGAAGTG-CAACAGTACAAAGCAA 1729
|| |||||||| ||||||||||| || ||| | || |||||| || | ||||| || ||
Sbjct 1769 ACCCCTCAACCTTTGTTCAAGGAGTTGGAAA-ACGACGAAGTGGCA-CGGTACAGAGAAA 1826
Query 1730 GGTTCGCTGGAAGTCAAGTCTGA 1752
||| ||||||||||| ||||||
Sbjct 1827 AGTTTGCTGGAAGTCA-GTCTGA 1848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86646140670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5