BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312133
Length=1926
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10880.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2765 0.0
> AT1G10880.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:3624035-3627082
REVERSE LENGTH=2017
Length=2017
Score = 2765 bits (1497), Expect = 0.0
Identities = 1812/1958 (93%), Gaps = 45/1958 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAAGCAAAAGATTACAACCTTTG-TACGAGAACTCAACTTAC-G--G-A-T-GAA 53
|||||||||||||||||||||||||||| || |||||||||||||| | | | | |||
Sbjct 62 ATGAAGAAGCAAAAGATTACAACCTTTGTTA-AAGAACTCAACTTACGGATGAATTCGAA 120
Query 54 GAAAGAACCGATAAGTCTCCGATACATTCACATCCTCGGCACCGTCGTCTTCTTCTCTTC 113
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 121 GAAAGAACCGATAAGTCTCCGATACATTCACATCCTTGGCACCGTTGTCTTCTTCTCCTC 180
Query 114 CGTCTCATCTCTCGTCATCCTCCTCGCTCTTTACCTTAACCAACGCCTCCAAACATCACT 173
||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 181 TGTCTCCTCTCTCGTCATCCTCCTTGCTTTTTACCTTAACCAACGCCTCCAAACATCACT 240
Query 174 CTTCCTCGTCGAAGATTATCACActctctcctcaaatcctctcacttctcctt--c-c-c 229
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 241 CTTCCTCGTCGAAGATTATCACACTCTCTCCTCAAATCCTCTCACTTCTCCTTCCCTCTC 300
Query 230 t-ct-ct-c--gt-c--ctcctcGCAGCTCTGGTAATGACGTGGCAGACGAAGAGCTGAT 281
| || || | | | |||||||||||||||||| | | | |||||||||||||||||
Sbjct 301 TCCTCCTCCTTCTCCTTCTCCTCGCAGCTCTGGTAGTAATATTGCAGACGAAGAGCTGAT 360
Query 282 GTGGCGAGCAGCGATGGCCCCACGCAGCGCCATGATGAATGAGACCCATCCAAAGGTTGC 341
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 361 GTGGCGAGCAGCGATGGCCCCACGCAGCCCCATGAAGAATGAGACCCATCCAAAGGTTGC 420
Query 342 GTTCATGTTTCTAACGAGGTGGAATTTGCCGTTGTCCCCTCTTTGGGAAATGTTCTTCAA 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTCATGTTTCTAACGAGGTGGAATTTGCCGTTGTCCCCTCTTTGGGAAATGTTCTTCAA 480
Query 402 AGGTCATGAAGGGTTTTATTCCATCTATGTTCATACCTCCCCGGAGTTCACTGCA-GAGC 460
||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||
Sbjct 481 AGGTCATGAAGGGTTTTATTCCATCTACGTTCATACCTCGCCGGAGTTCACT-CAAGAGC 539
Query 461 CGCCGGAATCTTCAGTATTTTACAGGAAACGGATACCAAGCAAGGCCGTTGAATGGGGAA 520
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 CGCCGGAATCTTCAGTATTTTACAAGAAACGGATACCAAGCAAGGCCGTTGAATGGGGAA 599
Query 521 AATCGT-CGATGATGGATGCAGAGAAGCGTCTTTTATCTCATGCCCTACTAGAACCTTCC 579
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AAT-GTTCGATGATGGATGCAGAGAAGCGTCTTATATCTCATGCCCTACTAGAACCTTCC 658
Query 580 AACGCACGCTTCGTCCTCCTCTCCGAGACTTGTATCCCTCTCTTCAACTTCACTACAATC 639
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 AACGCACGCTTCGTCCTCCTCTCCGAGACTTGTATCCCTCTCTTCAACTTCACCACAATC 718
Query 640 TACACTTACCTCACGCGTTCCACTCGCTCTTTCCTCGGCTCATTTGACGACCCAAGGCCC 699
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 TACACTTACCTCACGCGCTCCACTCGCTCTTTCCTCGGCTCATTCGACGACCCAAGGCCC 778
Query 700 ATGGGACGAGGCCGTTACACCCCTAAAATGCTCCCACACGTGTCGCTCTCTGATTGGCGG 759
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 ATGGGCCGAGGCCGTTACACCCCTAAAATGCTCCCACACGTGTCGCTCTCTGACTGGCGG 838
Query 760 AAAGGAAACCAGTGGTTCGAAATTTCACGTAGAGTCGCCGCCGAGATTGTCTCCGATCGC 819
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 839 AAAGGAAACCAATGGTTCGAAATCTCACGTAGAGTCGCCGCCGAGATCGTCTCTGATCGC 898
Query 820 CGGTACTACGCAGTCTTTAAGGATCACTGCCGGCCGCCGTGTTACATCGACGAGCATTAC 879
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 899 CGGTACTACGCCGTCTTTAAGGATCACTGCCGACCGCCGTGTTATATCGACGAGCATTAT 958
Query 880 CTTCCGACGTTGGTTAACAAGATTTGTCCGGAGATGAATTCGAACCGGACAGTGACGTGG 939
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTTCCGACGTTAGTTAACAAGATTTGTCCGGAGATGAATTCGAACCGGACAGTGACGTGG 1018
Query 940 GTTGATTGGTCAAGGGGTGGGTCCCATCCAGCGAGGTTTGTGAGGAAAGATATTCGAGTC 999
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 GTTGATTGGTCAAGAGGTGGGTCCCATCCAGCGAGGTTTGTGAGGAAAGATATTCGGGTC 1078
Query 1000 GGGTTCTTGGACCGGATCCGGTTCGGGTCGAATTGTAGCTACGAAG---AGGCTATGGAG 1056
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1079 GGGTTCTTGGATCGGATCCGGTTCGGTTCGAATTGTAGCTACGAAGGTGAGGCTATGGAG 1138
Query 1057 GTTGCAAAGACCAGAAGAAAGAAAACTAGTCGAAATGTAGGACATCATGATCTTGTTGGA 1116
|| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 GTCGCAAAGATTGGAAGAAAGAAAACTAGTCGAAATGTAGGACATCATGATATTGTTGGA 1198
Query 1117 CCCAAGAGGAATCAATACCACTACGTGAAGTCAATAGAAGAGAATGAGAAGATGGTAGAA 1176
|||||||||||||||||||||| | |||||||||||||||||| ||||| |||||| ||
Sbjct 1199 TCCAAGAGGAATCAATACCACTATGCGAAGTCAATAGAAGAGAACGAGAATATGGTAAAA 1258
Query 1177 GAAATGCAACAACAAATGCTTCAAATCGACAAAGAACTCAGAGAGAAAACGTACATATCA 1236
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1259 GAGATGCAACAACAAATGCTTCAAATCGACAAAGAAATCAGAGAGAAAACGTACATATCA 1318
Query 1237 GGACTAGAATACAACTTGAATCATAGATGGAGACCAATTGAGGATTACGAGCCGGTGGTG 1296
|||||||||||||||||||| |||||||||||||| |||||||||||| ||||| | |||
Sbjct 1319 GGACTAGAATACAACTTGAACCATAGATGGAGACCGATTGAGGATTACCAGCCGATAGTG 1378
Query 1297 AATTTTGGATCAAATTTCCCCGATAAAATGGTGCTCGACAAACTAACTTTTGCTAACAAC 1356
| ||| ||||||| | ||| || || |||||||| ||||||||||||||||||||||||
Sbjct 1379 TACTTTCGATCAAAGTGCCCTGAGAAGATGGTGCTAGACAAACTAACTTTTGCTAACAAC 1438
Query 1357 GCATATCGTGATAAGAAGGCTGTTGTATCATTTTCGTCTGGGGAACGAGAAATTAATATC 1416
||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1439 GCATATCGTGACAAGAAGGCTGTTATATCATTTGCGTCTGGGGAACGAGAGATTAATATC 1498
Query 1417 CATAATCTAAACCATCAGATGTTACACAAGGCGCATTGCATGGAAGGTG---AGAGACGC 1473
||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||
Sbjct 1499 CATAATCTAAACCATCAGATGTTACACAATGCGCATTGTATGGATGGTGGTGAGAGACGC 1558
Query 1474 CTTCTTAAGATGCTGAATCCAAATAAGGATATCGACTCTGGTTTTTCGCTTGCACAAGTT 1533
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1559 CTTCTTAAGATGCTGAATCCAAATAAGGATATCGACTCTGGTTCATCGCTTGCACAAGTT 1618
Query 1534 GAAGTACAAGTTAAGAAATGGCCATATTTAAATAACACAAGCGCAAGCACAATCGATGAA 1593
|||| ||| | || | |||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 1619 GAAGAACA-G--AA-A--TGGCCATATTTAAATACCACAAGCACAATCACAATCGATGAA 1672
Query 1594 GAAACATATAGTAGGAAGCAAAGGGAACTTGAATGTGAGAGAGATAAAGTGTTTATTAAT 1653
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1673 GAAACATATAGTAGGAAGCAAAGGGAATTTGAATGTGAGAGAGATCAAGTGTTTGTTAAT 1732
Query 1654 TCTCCTTCTAAAGCTTCTCTATGGAAG-CTATTACCTTCTACTAAGGACTTACGCAACCA 1712
||||||||||||| ||||| ||||| | ||||||||||| |||||||||||| ||||
Sbjct 1733 GCTCCTTCTAAAGCCTCTCTGTGGAAATCG-TTACCTTCTACCAAGGACTTACGCGACCA 1791
Query 1713 GATTCAGGCAATGGAGGCaaaaggtgaacaaaagaaga-gaaaggttgtggaaagaagga 1771
|||||||||||||||| ||||||||||||||||| || ||||| |||||| ||||||||
Sbjct 1792 GATTCAGGCAATGGAGTTAAAAGGTGAACAAAAGAGGAAGAAAG-TTGTGGGAAGAAGGA 1850
Query 1772 agaagatagaatcaagggaaagaaagataaagaagacagagaatgagattaagTCTATGA 1831
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1851 AGAAGATAGAGTCAAGGGAAAGAAAGATAAAGAAAACAGAGAATGAGATTAAGTCTATGA 1910
Query 1832 GAAAAA-TGATGGAGAGGATTCACAACAAAAAACACAAAGCTTTGGAAACCATTTCACAT 1890
|||| | | ||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1911 GAAAGACT-ATGGAGAGGATTCTCAACAGAATGCACAAAGCTTTGGAAACCATTTCACAT 1969
Query 1891 GAGAGGTCTTGTTTAGAGAA-AA--TCACAATTCTATA 1925
|| ||| ||||||||||||| || |||||||||||||
Sbjct 1970 GAAAGGACTTGTTTAGAGAAGAAAATCACAATTCTATA 2007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95381035500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5