BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312135
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1003 0.0
AT3G14030.1 | Symbols: | F-box associated ubiquitination effec... 344 2e-93
AT3G15935.1 | Symbols: | pseudogene, hypothetical protein | ch... 333 4e-90
AT1G66490.1 | Symbols: | F-box and associated interaction doma... 104 3e-21
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 78.7 2e-13
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 75.0 2e-12
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 75.0 2e-12
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 65.8 1e-09
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 58.4 2e-07
> AT1G10890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: petal, flower, leaf;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G13340.1);
Has 11769 Blast hits to 8435 proteins in 698 species: Archae
- 22; Bacteria - 971; Metazoa - 5937; Fungi - 1065; Plants
- 592; Viruses - 101; Other Eukaryotes - 3081 (source:
NCBI BLink). | chr1:3627726-3630765 FORWARD LENGTH=1254
Length=1254
Score = 1003 bits (543), Expect = 0.0
Identities = 665/719 (92%), Gaps = 28/719 (4%)
Strand=Plus/Plus
Query 6 CAGGCGGAAAAGTCGCTCTATTTCTCCTAGGCGCCATCAAAGTCGATCTGTTACTCCTAA 65
|||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 314 CAGGCGAAAAAGTCGTTCTATTTCTCCTAGGCGCCATCGAAGTCGATCTGTTACTCCTAA 373
Query 66 GAGACGTTCTCCAACCCCAAAACGTTACAAAAGACAAAAGAATAGGAGTTCAACTCCATC 125
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 374 GAGACGTTCTCCAACCCCAAAACGTTACAAAAGACAAAAGAGTAGGAGTTCAACTCCATC 433
Query 126 TCCTGCAAAAGGATCTCCTGCCGCAACCCTTGAGTCAGCTAAACATAGAAATGGAGAAAA 185
|||||||||| ||||||| |||||||||||||||||||| ||| |||| |||||||||||
Sbjct 434 TCCTGCAAAAAGATCTCCCGCCGCAACCCTTGAGTCAGCCAAAAATAGGAATGGAGAAAA 493
Query 186 ACTTAAAAGAGAAGAGGAAGAGCGAAAAAGGCGACAGCAG-GAAGCAGAACTGAAGCTAA 244
||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 494 ACTTAAAAGAGAAGAGGAAGAACGAAAAAGGCGACAGC-GTGAAGCAGAACTGAAGCTAA 552
Query 245 TAGAGGAAGAAACTGTAAAACGGGTTGAAGAAGCTATTCGAAAAAAGGTCGTGGAAAGCT 304
|||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 553 TAGAGGAAGAAACTGTGAAACGGGTTGAAGAAGCTATTCGAAAGAAGGTCGAAGAAAGCT 612
Query 305 TACAGTCTGAGAAAAT-AAAATTGGAAATTCTAACGCTGTTGGAGGAAGGTCGAAAGAGA 363
|||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 613 TACAGTCTGAGAAAATCAAAAT-GGAAATTCTAACGCTGTTGGAGGAAGGGCGAAAGAGA 671
Query 364 CTTGATGAAGAAGTCGCGGCTCAACTTGAGAAGGAGAAAGAGGCTTCTCTTATTGAGGCT 423
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 672 CTTAATGAAGAAGTCGCGGCTCAACTTGAGGAGGAGAAAGAGGCTTCTCTTATTGAGGCT 731
Query 424 aaagaaaaagagg-----a-------------a-ag-a--gag--caacaagagaaagaa 459
||||||||||||| | | || | ||| |||||||||||||||
Sbjct 732 AAAGAAAAAGAGGGTGTTATGCGGTGTTTGTCACAGGAAAGAGAGCAACAAGAGAAAGAA 791
Query 460 gagagtgagagaatagcagaggagaaccttaagagagtggaagaagctcagagaaaagaa 519
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 792 GAGAGGGAGAGAATAGCAGAGGAGAACCTAAAGAGAGTGGAAGAAGCTCAGAGAAAAGAA 851
Query 520 gCAATGGAAAGGCAAAGGAAAGAGGAGGAACGGTATCGGGAGCTCGAGGAGCTGCAACGA 579
|||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 852 GCAATGGAGAGGCAAAGGAAAGAGGAGGAACGGTATCGAGAGCTAGAGGAGCTGCAACGA 911
Query 580 CagaaagaagaagcaatgcgaaggaagaaagcggaagaggaagaagaaCGTCTCAAACAG 639
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 912 CAGAAAGAAGAAGCGATGCGAAGGAAGAAAGCTGAAGAGGAAGAAGAACGTCTCAAACAG 971
Query 640 ATGAAACTGTTGGGTAAAAACAAATCACGCCCTAAATTATCTTTTGCCTTAAGCTCCAA 698
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 972 ATGAAACTGTTGGGTAAAAACAAATCACGGCCTAAATTATCCTTTGCCTTAAGCTCCAA 1030
> AT3G14030.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:4646272-4647124 REVERSE LENGTH=756
Length=756
Score = 344 bits (186), Expect = 2e-93
Identities = 562/734 (77%), Gaps = 64/734 (9%)
Strand=Plus/Plus
Query 1048 TGGAATCCTTATTTGGGGCAAACGAGGTGGATCCAACCCAGACAGAGTTTCCACAGATTA 1107
|||||||||| |||||| |||||||| ||||||||||||| | | | |||||| ||| ||
Sbjct 36 TGGAATCCTTGTTTGGGACAAACGAGATGGATCCAACCCAAAAACAATTTCCATAGACTA 95
Query 1108 GACAGTTATGCTCTTGGACATGACAACAA-C-GGTAAACACAAAATCTTGAGGTTTGTGG 1165
||| | |||||||||||| | |||||||| | |||| |||||||||||||||||||||
Sbjct 96 GAC-G-TATGCTCTTGGATACGACAACAACCTCGTAACCACAAAATCTTGAGGTTTGTGA 153
Query 1166 ATGA-TATCTTACCTGTC-AAA-AACG----T-GGGAAACACTTACTTTTTCGCTAAACA 1217
|||| || || | || || ||| || | | |||||| |||||||||| |||| || |
Sbjct 154 ATGATTACCTCA-CTTTCGAAACAAAGTTTTTGGGGAAATACTTACTTTTACGCTCAAGA 212
Query 1218 GAGATTAATATTTGAAGGAG-A-G---GG-ACCTGTAGACATAGATATAACAGAGA-C-- 1268
| | || | ||||||| | | || | || ||| |||||| ||| | | |
Sbjct 213 AAAAGCAACGGTGGAAGGAGAAGGAATGGAAGAGGTCGACGTAGATACAAC-G-TATCTT 270
Query 1269 CGAAGACTTTT-TACTCTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGTCTTCCTC 1327
| || |||| ||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 271 C-CAG-TTTTTCTACTCTGTTTTGATTTTACAGCAGAGAGATTTGGACCGCGTCTTCCTC 328
Query 1328 TTCCTTTTCACTCT--T-AT---T-TC-----GACGAGACTGTGACTCTA-TCTTGTGTT 1374
|||| ||||||||| | || | || || |||| |||| ||||| || |||||
Sbjct 329 TTCCGTTTCACTCTCATGATAACTCTCATGATGAAGAGATTGTGTCTCTATTC-TGTGTC 387
Query 1375 AAAGAAGATCAGCTCTCCATCTTATACCAGCCCTTGGTGCCATATGAGAT-CATGGAGAT 1433
||||| || |||||| | | ||| | || ||| || | | |||| | |||||||
Sbjct 388 AAAGAGGAGCAGCTCGCTGTGTTACATCAAAACTT--TG-C---T-AGATGCTTGGAGAT 440
Query 1434 TTGGGTTTCCACTAATATTGAGCCCAATGCTGTGTCGTGGAGCATGTTTTTGAAAGTGGA 1493
|||| || |||| || || ||||| | ||| ||||| |||||||||||||||||||||||
Sbjct 441 TTGGATTACCACCAAGATCGAGCCTAGTGCGGTGTCTTGGAGCATGTTTTTGAAAGTGGA 500
Query 1494 TATGAGACCACTCACTGGTTTTCAGTTTGACGTT-ATGGCTGGGAGTTTCTTCATTGACC 1552
|||||||||||||||||| ||| ||| | | ||| | | ||||||||||||| |||||
Sbjct 501 TATGAGACCACTCACTGGCTTTAAGTGTCATGTTGAAG-CTGGGAGTTTCTTTGTTGACG 559
Query 1553 AGGAGAACAAAGTCGCCGTGGTTTTTGATCTTGACCCATATCCACA-ATCCGTGACCCGT 1611
||||||| ||||||||| ||||||| ||||| ||| | | | | | ||| ||| |
Sbjct 560 AGGAGAAGAAAGTCGCCATGGTTTTCGATCTAGACGGACGTAAAAAGA-CCGAGACTTGC 618
Query 1612 CGCTACCAAACAGCTTACATCATTGGACAAGATGGTGGATACTTCAAATCTGTTGA-TAT 1670
|||||||| |||||| ||||||||||||||||||| ||||||||||||||| || |||
Sbjct 619 CGCTACCAGACAGCTCACATCATTGGACAAGATGG---ATACTTCAAATCTGT-GAATAT 674
Query 1671 CGGAGAAGCTCCA-AATATCATGACACGTGACAGCTACGGATATATTGGCC--CCATGTA 1727
| ||||||| | | ||| || || || ||||| | ||||| | | || |||| ||
Sbjct 675 CCGAGAAGCAC-AGAATCTCGGGAAACCTGACATATTTGGATACACT--CCTTCCATTTA 731
Query 1728 TTGTGTCCCGCTTG 1741
||||||||| ||||
Sbjct 732 TTGTGTCCCACTTG 745
> AT3G15935.1 | Symbols: | pseudogene, hypothetical protein |
chr3:5390599-5391763 REVERSE LENGTH=1165
Length=1165
Score = 333 bits (180), Expect = 4e-90
Identities = 345/422 (82%), Gaps = 21/422 (5%)
Strand=Plus/Plus
Query 1270 GAAGACTTTTTACTCTGTTTTGATTT-TACTGCTGAGAGATTTGGACCGCGTCTTCCTCT 1328
||||| |||||||||| ||||||||| | | | ||||| |||| |||||||||||||||
Sbjct 671 GAAGATTTTTTACTCTATTTTGATTTCT-CCACAGAGAGGTTTGAACCGCGTCTTCCTCT 729
Query 1329 TCCTTTTCACTCTTAT-TTCGACGAGACTGTGACTCTATCTTGTGTTAAAGAAGATCAGC 1387
|| || |||| |||| || | || || ||| |||| ||| |||||| ||| || ||||
Sbjct 730 GCCATTCCACTTTTATGTTTTA-GAAACCGTGTCTCTCTCTAGTGTTAGAGATGAGCAGC 788
Query 1388 TCT-CCATCTTATACCAGCCCTTGG-TGCCATATGAGATCATGGAGATTTGGGTTTCCAC 1445
| | || | ||||| |||| ||||| | |||| |||||| |||| || ||| || ||||
Sbjct 789 T-TGCCGTGTTATATCAGCGCTTGGAT-TCATACGAGATCTTGGATATCTGGCTTACCAC 846
Query 1446 TAATATTGAGCCCAATGCTGTGTCGTGGAGCATGTTTTTGAAAGTGGATATGAGACCACT 1505
||| |||||||| | ||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 847 TAAGATTGAGCCTAGTGCGGTTTCGTGGAGCATGTTTTTGAAACTGGATATGAGACCACT 906
Query 1506 CACTGGTTTTCAGTTTGA-CGT-TATGGCTGGGAGTTTCTTCATTGACCAGGAGAACAAA 1563
|||||||||||||||| | || | || ||| || |||||||| ||| ||||||| |||
Sbjct 907 CACTGGTTTTCAGTTT-ATGGTCGACGG-TGGAAGCTTCTTCATCGACGAGGAGAAGAAA 964
Query 1564 GTCGCCGTGGTTTTTGATCTTGACC-CATATCCACA-ATCCGTGACCCGTCGCTACCAAA 1621
||||| || |||||||||| | ||| | || ||| | |||||||||||||||||||||
Sbjct 965 GTCGCTGTCGTTTTTGATC-TAACCAAACATAAACAGA-CCGTGACCCGTCGCTACCAAA 1022
Query 1622 CAGCTTACATCATTGGACAAGATGGTGGATACTTCAAATCTGTT-GATATCGGAGAAGCT 1680
||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||
Sbjct 1023 CAGCTTACATCATTGGACAAGATGG---ATACTTCAAACCTGTTAGCC-TCGGAGAAGCT 1078
Query 1681 CC 1682
||
Sbjct 1079 CC 1080
> AT1G66490.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:24809421-24810549 REVERSE LENGTH=1083
Length=1083
Score = 104 bits (56), Expect = 3e-21
Identities = 321/440 (73%), Gaps = 54/440 (12%)
Strand=Plus/Plus
Query 1271 AAGACTTTTTACTCTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGTCTTCCTCTTC 1330
|||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 596 AAGATTTTTTAGTGTGTTTTGATTTTACTGCTGAGAGATTTGGACCGCGCCTTCCTCTGC 655
Query 1331 CTTTTCACTCTTA---TTTCGA---CGAGA-C-TGTGACTCTATCTTGTGTTAAAGAAGA 1382
| |||||||||| ||| | | ||| | ||||||| |||||||||| || || ||
Sbjct 656 CGTTTCACTCTTGCGGTTT-GTTTTC-AGAACATGTGACTTTATCTTGTGT-AA-GA-GA 710
Query 1383 TCAGCTCTC--CA-TCTTATACCAGCCCTTGGTGCCATATG-AGATCATGGAGATTTGGG 1438
| ||| || | ||||||| | | | ||| | | ||| || | |||||||| |
Sbjct 711 TGAGCACTTAGCTGTCTTATATC-GAC---GGTAC-A-ATGGAG-TAATGGAGATATATA 763
Query 1439 TTTCCACTAATATTGAGCCCAATGCTGTGT-CGTGGAGCATGTTT-TTGAAAGTGGATAT 1496
|| | ||||| |||||||| |||| || | | ||||||| ||| |||||||||||| |
Sbjct 764 TTACAACTAAGATTGAGCCGAATGAGGTATTC-TGGAGCAA-TTTCTTGAAAGTGGATCT 821
Query 1497 GAG-ACCACTC---ACTGGTTTTCA-GTTTGACGTTATGGCTGGGAGTTTCTTCATTGAC 1551
| || || || | |||| | | | || | | || | || ||||||||||
Sbjct 822 CACTACTTTTCCGGACAGATTTT-ATGGAAGTCGATCTCACT---ACTT-CTTCATTGAC 876
Query 1552 CAGGAGAACAAAGTCGCCGTGGTTTTTGATCTTGACCCAT-A-TCCACAATCCGTGACCC 1609
||||||| |||||||| |||||||| | ||| || | | | || || | ||
Sbjct 877 GAGGAGAAAAAAGTCGCTGTGGTTTTCAAGAATGAACC-TGAATGGACCAT--G-GATT- 931
Query 1610 GT-CGCTACCAAACAGCTTACATCATTGGACAAGATGGTGGATA-CTTCAAATCTGTTGA 1667
|| | |||||||||||||||||| |||||| || | || ||||| || ||||||||| ||
Sbjct 932 GTTC-CTACCAAACAGCTTACATTATTGGA-AA-A-GGAGGATATCT-CAAATCTGT-GA 985
Query 1668 TAT-CGGAGAAGCTCCAAAT 1686
|| ||||||| |||| |||
Sbjct 986 AATTCGGAGAAACTCCTAAT 1005
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 78.7 bits (42), Expect = 2e-13
Identities = 147/196 (75%), Gaps = 14/196 (7%)
Strand=Plus/Plus
Query 977 TATCTAAAATCTTTCACTGCGACGGTTTATTGTTATGCGT-A--ATCAAAGATGACACGA 1033
||||| || ||||||||||||||||||||||||||||| | | |||| | | || ||
Sbjct 146 TATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCCAAGCCAAGA 205
Query 1034 ATAAGCTCTTGGTCTGGAATCCTTATTTGGGGCAAACGAGGTGGATCCAACCCAGACAG- 1092
|| |||| |||| ||||| || |||| |||||| || ||| ||| | |||| |||
Sbjct 206 CTAGGCTCGTGGTTTGGAACCCGTATTGGGGGCATACCCGGTCAATCGAGCCCACACATC 265
Query 1093 AGTTTCCACAGATTAGACAG-T-T----ATGCTCTTGGACATGACAACAACGGTAAA-C- 1144
|||| | ||| ||| ||||| | | ||||||| ||| | ||||| | | | ||| |
Sbjct 266 AGTT-CAACAAATTCGACAGCTATTCTTATGCTCTCGGATACGACAAGAGCAGCAAATCC 324
Query 1145 -ACAAAATCTTGAGGT 1159
|||||||||||||||
Sbjct 325 CACAAAATCTTGAGGT 340
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 75.0 bits (40), Expect = 2e-12
Identities = 121/157 (77%), Gaps = 18/157 (11%)
Strand=Plus/Plus
Query 977 TATCTAAAATCTTTCACTGCGACGGTTTATTGTTATGCGTAATCAAAGAT-GACACGAAT 1035
||| |||| ||||||||||||||||||||||||||||| | ||| || | || |
Sbjct 323 TATGTAAAGTCTTTCACTGCGACGGTTTATTGTTATGC--A-TCACT-ATTGG---GA-T 374
Query 1036 AAG-CTCT-TGGTCTGGAATCCTTATT-TGGGGCAAACGAGGTGGATCCAACCCAGACAG 1092
|| || | |||| || |||||||||| |||| ||||| ||||| ||| || ||||| ||
Sbjct 375 CAGGCT-TGTGGTTTGTAATCCTTATTGTGGG-CAAACAAGGTGTATCAAAACCAGA-AG 431
Query 1093 AGTTTCCACAGATTA--GACAGTTATGCTCTTGGACA 1127
|| || | || || | |||| ||| |||||||||||
Sbjct 432 AGATTAC-CATATAACCGACAATTACGCTCTTGGACA 467
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 75.0 bits (40), Expect = 2e-12
Identities = 121/157 (77%), Gaps = 18/157 (11%)
Strand=Plus/Plus
Query 977 TATCTAAAATCTTTCACTGCGACGGTTTATTGTTATGCGTAATCAAAGAT-GACACGAAT 1035
||| |||| ||||||||||||||||||||||||||||| | ||| || | || |
Sbjct 323 TATGTAAAGTCTTTCACTGCGACGGTTTATTGTTATGC--A-TCACT-ATTGG---GA-T 374
Query 1036 AAG-CTCT-TGGTCTGGAATCCTTATT-TGGGGCAAACGAGGTGGATCCAACCCAGACAG 1092
|| || | |||| || |||||||||| |||| ||||| ||||| ||| || ||||| ||
Sbjct 375 CAGGCT-TGTGGTTTGTAATCCTTATTGTGGG-CAAACAAGGTGTATCAAAACCAGA-AG 431
Query 1093 AGTTTCCACAGATTA--GACAGTTATGCTCTTGGACA 1127
|| || | || || | |||| ||| |||||||||||
Sbjct 432 AGATTAC-CATATAACCGACAATTACGCTCTTGGACA 467
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 65.8 bits (35), Expect = 1e-09
Identities = 43/47 (91%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 785 TGAAAACAGTGCGATCTATTTGCAAAAAGTGGAATACTTTATCCAAA 831
||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 65 TGAGAACAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAA 111
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 58.4 bits (31), Expect = 2e-07
Identities = 37/40 (93%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 986 TCTTTCACTGCGACGGTTTATTGTTATGCGTAATCAAAGA 1025
||||||||||||||||||||||||||||| | || |||||
Sbjct 287 TCTTTCACTGCGACGGTTTATTGTTATGCATCATGAAAGA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5