BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312165
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11250.1 | Symbols: SYP125, ATSYP125 | syntaxin of plants 12... 1469 0.0
> AT1G11250.1 | Symbols: SYP125, ATSYP125 | syntaxin of plants
125 | chr1:3768724-3769706 FORWARD LENGTH=897
Length=897
Score = 1469 bits (795), Expect = 0.0
Identities = 861/894 (96%), Gaps = 0/894 (0%)
Strand=Plus/Plus
Query 1 ATGAACGATTTATTCTCTAATTCATTCAAGAAGAACCAGGCTCAACTGCGCGATGTTGAG 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGAACGATTTATTCTCTAATTCATTCAAGAAGAACCAGGCTCAACTGGGGGATGTTGAG 60
Query 61 GCAGGTCAAGAAACGATGAACCTCGACAAATTCTTCGAGGATGTCGAGAATGTGAAGGAC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GCAGGTCAAGAAACGATGAACCTCGATAAATTCTTCGAGGATGTCGAGAATGTGAAGGAC 120
Query 121 GACATGAAAGGAGTCGAGACTCTTTATAAGAAGCTTCAAGACTCGAATGAAGAGTGCAAG 180
|||||||||||||||||| ||||||||||||||||||||||||| || || |||||||||
Sbjct 121 GACATGAAAGGAGTCGAGGCTCTTTATAAGAAGCTTCAAGACTCAAACGAGGAGTGCAAG 180
Query 181 ACGGTTCACAATGCCAAGAAAGTAAAAGAGCTACGAGCTAAGATGGATGGGGACGTAGGA 240
|||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| |
Sbjct 181 ACGGTTCACAATGCCAAGAAGGTTAAAGAGCTACGAGCTAAGATGGATGGAGACGTAGCA 240
Query 241 ATGGTCCTGAAAAGGGTTAAAATCATTAAGCAGAAGCTCGAAGCCTTAGAGAAAGCGAAT 300
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ATGGTCCTTAAGAGGGTTAAAATCATCAAGCAGAAGCTCGAAGCCTTAGAGAAAGCGAAT 300
Query 301 GCTAATAGCCGTAATGTCCCGGGTTGTGGGCCCGGTTCGTCTACGGATAGGACTCGATCT 360
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GCTAATAGCCGTAATGTCCCTGGTTGTGGGCCTGGTTCGTCTACGGATAGGACTCGATCT 360
Query 361 TCTGTGGTTAGCGGTCTCGGGAAGAAGCTCAAAGACTTGATGGATAGTTTCCAAGGTCTG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TCTGTGGTTAGCGGTCTCGGGAAGAAGCTCAAAGACTTGATGGATAGTTTTCAAGGTCTA 420
Query 421 CGTGCTCGTATGAACAATGAGTATAAGGAAACCGTAGAGCGCAGGTACTTCACAATAACA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CGTGCTCGTATGAACAATGAGTATAAGGAAACCGTAGAGCGCAGGTATTTCACAATAACA 480
Query 481 GGAGAAAAAGCAGACGAGCAAACAATCGATAACTTGATAGCAAGCGGTGAGAGCGAGAAT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGAGAAAAAGCAGACGAGCAAACAATCGATAACTTGATAGCGAGCGGTGAGAGCGAGAAT 540
Query 541 TTCCTCCAGAAAGCGATTCAAGAGCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAG 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTCTCCAAAAAGCGATTCAAGAGCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAG 600
Query 601 ATCCAAGAGAGACATGATGCAGTGAAGGAGATAGAGAAAAATCTACTAGAGCTGCACCAA 660
||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 601 ATCCAGGAGAGACATGATGCAGTGAAGGAGATAGAGAAGAATCTACTGGAGCTGCACCAG 660
Query 661 GTTTTCTTGGACATGGCAGCTCTAGTGGAAGCGCAAGGGCAACAATTAAACAACATAGAG 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GTTTTCTTGGACATGGCAGCTCTAGTAGAAGCGCAAGGGCAACAATTAAACAACATAGAG 720
Query 721 AGCCATGTAGCGAAAGCGAGCTCGTTTGTTAGAAGAGGGACTGATCAGCTCCAAGACGCG 780
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 721 AGCCATGTGGCGAAAGCGAGCTCGTTTGTGAGAAGAGGGACTGATCAGCTCCAAGATGCG 780
Query 781 AGGGAGTACCAAAAGAGCTCCAGGAAATGGACTTGTTATGCCATCATCCTCTTCATCGTC 840
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AGGGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTACGCCATCATCCTCTTCATCGTC 840
Query 841 ATCTTTATCCTCCTTCTCATTCCCCTTCTACCTCACATAATGCTCATGTTGAAG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCTTTATCCTCCTTCTCATTCCCCTTCTACCTCACATAATGCTCATGTTGAAG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5