BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312165 Length=900 Score E Sequences producing significant alignments: (Bits) Value AT1G11250.1 | Symbols: SYP125, ATSYP125 | syntaxin of plants 12... 1469 0.0 > AT1G11250.1 | Symbols: SYP125, ATSYP125 | syntaxin of plants 125 | chr1:3768724-3769706 FORWARD LENGTH=897 Length=897 Score = 1469 bits (795), Expect = 0.0 Identities = 861/894 (96%), Gaps = 0/894 (0%) Strand=Plus/Plus Query 1 ATGAACGATTTATTCTCTAATTCATTCAAGAAGAACCAGGCTCAACTGCGCGATGTTGAG 60 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1 ATGAACGATTTATTCTCTAATTCATTCAAGAAGAACCAGGCTCAACTGGGGGATGTTGAG 60 Query 61 GCAGGTCAAGAAACGATGAACCTCGACAAATTCTTCGAGGATGTCGAGAATGTGAAGGAC 120 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 61 GCAGGTCAAGAAACGATGAACCTCGATAAATTCTTCGAGGATGTCGAGAATGTGAAGGAC 120 Query 121 GACATGAAAGGAGTCGAGACTCTTTATAAGAAGCTTCAAGACTCGAATGAAGAGTGCAAG 180 |||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||| Sbjct 121 GACATGAAAGGAGTCGAGGCTCTTTATAAGAAGCTTCAAGACTCAAACGAGGAGTGCAAG 180 Query 181 ACGGTTCACAATGCCAAGAAAGTAAAAGAGCTACGAGCTAAGATGGATGGGGACGTAGGA 240 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| | Sbjct 181 ACGGTTCACAATGCCAAGAAGGTTAAAGAGCTACGAGCTAAGATGGATGGAGACGTAGCA 240 Query 241 ATGGTCCTGAAAAGGGTTAAAATCATTAAGCAGAAGCTCGAAGCCTTAGAGAAAGCGAAT 300 |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 ATGGTCCTTAAGAGGGTTAAAATCATCAAGCAGAAGCTCGAAGCCTTAGAGAAAGCGAAT 300 Query 301 GCTAATAGCCGTAATGTCCCGGGTTGTGGGCCCGGTTCGTCTACGGATAGGACTCGATCT 360 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 301 GCTAATAGCCGTAATGTCCCTGGTTGTGGGCCTGGTTCGTCTACGGATAGGACTCGATCT 360 Query 361 TCTGTGGTTAGCGGTCTCGGGAAGAAGCTCAAAGACTTGATGGATAGTTTCCAAGGTCTG 420 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 361 TCTGTGGTTAGCGGTCTCGGGAAGAAGCTCAAAGACTTGATGGATAGTTTTCAAGGTCTA 420 Query 421 CGTGCTCGTATGAACAATGAGTATAAGGAAACCGTAGAGCGCAGGTACTTCACAATAACA 480 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 421 CGTGCTCGTATGAACAATGAGTATAAGGAAACCGTAGAGCGCAGGTATTTCACAATAACA 480 Query 481 GGAGAAAAAGCAGACGAGCAAACAATCGATAACTTGATAGCAAGCGGTGAGAGCGAGAAT 540 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 GGAGAAAAAGCAGACGAGCAAACAATCGATAACTTGATAGCGAGCGGTGAGAGCGAGAAT 540 Query 541 TTCCTCCAGAAAGCGATTCAAGAGCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAG 600 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTTCTCCAAAAAGCGATTCAAGAGCAAGGAAGAGGTCAAATCCTAGACACGATATCTGAG 600 Query 601 ATCCAAGAGAGACATGATGCAGTGAAGGAGATAGAGAAAAATCTACTAGAGCTGCACCAA 660 ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 601 ATCCAGGAGAGACATGATGCAGTGAAGGAGATAGAGAAGAATCTACTGGAGCTGCACCAG 660 Query 661 GTTTTCTTGGACATGGCAGCTCTAGTGGAAGCGCAAGGGCAACAATTAAACAACATAGAG 720 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 661 GTTTTCTTGGACATGGCAGCTCTAGTAGAAGCGCAAGGGCAACAATTAAACAACATAGAG 720 Query 721 AGCCATGTAGCGAAAGCGAGCTCGTTTGTTAGAAGAGGGACTGATCAGCTCCAAGACGCG 780 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 721 AGCCATGTGGCGAAAGCGAGCTCGTTTGTGAGAAGAGGGACTGATCAGCTCCAAGATGCG 780 Query 781 AGGGAGTACCAAAAGAGCTCCAGGAAATGGACTTGTTATGCCATCATCCTCTTCATCGTC 840 ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 781 AGGGAATACCAAAAGAGCTCGAGGAAATGGACTTGTTACGCCATCATCCTCTTCATCGTC 840 Query 841 ATCTTTATCCTCCTTCTCATTCCCCTTCTACCTCACATAATGCTCATGTTGAAG 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 ATCTTTATCCTCCTTCTCATTCCCCTTCTACCTCACATAATGCTCATGTTGAAG 894 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43954878625 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5