BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312180
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11480.1 | Symbols: | eukaryotic translation initiation fac... 2638 0.0
> AT1G11480.1 | Symbols: | eukaryotic translation initiation factor-related
| chr1:3864153-3866969 REVERSE LENGTH=2171
Length=2171
Score = 2638 bits (1428), Expect = 0.0
Identities = 1643/1746 (94%), Gaps = 18/1746 (1%)
Strand=Plus/Plus
Query 1 ATGTCAAAGAAGAAAGCGGCTGCCATGACGCTTAAGGACTTCCATGGCGGCTCTATACCA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 220 ATGTCAAAGAAGAAATCGGCTGCCATGACGCTTAAGGACTTCCATGGCGGCTCAATACCA 279
Query 61 TCTGATCTCCCTCTCCCTTCCGCTCCTGGAGTGACTCCGAAGGTTACTCCAGATCGACCT 120
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 280 TCTGATCTCCCTCTCCCTTCCGCTCCTGGAGTGACTCCGAAGGTTATTCCGGATCGACCT 339
Query 121 GTTTTCGATAGAGCGCCTT-GGGGAACTTCAATTGGCAGGCCAGATCAGAGGGCAAGGCC 179
||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||| ||
Sbjct 340 GTTTTTGATAGAGCGCCTTGGGGGAA-TTCAATTGGCAGGCCAGATCAGAGAGCAAGACC 398
Query 180 GAGTTCGTCTCATGCTATTAGAAATCTCGATGATAAATCACTGTTTCTGCCTCCCAACGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 399 GAGTTCGTCTCATGCTATTAGAAATCTCGATGATAAATCACTGTTTCTGCCTCACAATGT 458
Query 240 GAATATCGGACGTAATTTCAGTGAGGATGAACGGAAGCCTCTGGATGGTCACTCGGCTCC 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 459 CAATATCGGACGTAATTTCAGTGAAGATGAACGGAAGCCTCTGGATGGTCACTCTGCTCC 518
Query 300 TCGTAGAGTGGTCAGTGATGATGTTTTTCGGTTTGCGAATAACCGTTTGGAGGTGAAAGC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 519 TCGTAGAGTGGTCAGTGATGATGTTTTTCGGTTTGCGAATAACCGTTTGGAGATGAAAGC 578
Query 360 AGACTCGGTTTTAGCTGGGAGGCATAGTGGTTGGGCGGCTGGTCATTTGACTCATTCTGG 419
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 579 AGACTCGGTTTTAGCTGGGAGGCATAGTGGTTGGGCAGCTGGTCCTTTGACTCATTCTGG 638
Query 420 GACTTGTATTGTTGAGAACTCGGTGTCAGGAACTCACTCTAATGTTTGGAATGGGAGGAA 479
|||| ||| | |||||||||| |||||||||| |||||||||| ||||||||||||||||
Sbjct 639 GACTGGTAATATTGAGAACTCAGTGTCAGGAAATCACTCTAATATTTGGAATGGGAGGAA 698
Query 480 AGAGGTATCAGTTGCTAACAATGAGCCTGGACAGTCTCCATGGACTAAACAACCAGCTGT 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GGAGGTATCAGTTGCTAACAATGAGCCTGGACAGTCTCCATGGACTAAACAACCAGCTGT 758
Query 540 TTCTAATTTGGTCCATACAAATGCGCCTGACCAAGTGTCTTCAGGAATATTGCAGTCCAA 599
||| |||||||||||||||| ||||| ||||||||||||||||||| || |||||||||
Sbjct 759 TTCGAATTTGGTCCATACAAGTGCGCTTGACCAAGTGTCTTCAGGAGGATGGCAGTCCAA 818
Query 600 GCTTTGGGTTCCTCCTCAGATGGGATTTGATGTTGTTAAGCATTCAGAGATAGAGAGCAG 659
||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| | |||
Sbjct 819 GCTTTTGGTTCCTTCTCAGATGGGTTTTGATGTTGTTAAGCATTCAGAGATAGATACCAG 878
Query 660 AGTTTATAAGACTAATAGCCATGTGCTTGA-TCAAGGGGATGAGCCACATGGAACACATG 718
|||||||||||||||||||| |||| || | |||||||| ||||||||||||||||||||
Sbjct 879 AGTTTATAAGACTAATAGCCCTGTGATT-AGTCAAGGGGTTGAGCCACATGGAACACATG 937
Query 719 TAGAACGGGCACTGATTGCTGAAGATGGGATCCAGGGTGGGAAAAAATTCTCCCGTGAGT 778
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 938 TAGAACGGGCACTGATTGCTGAAGATGGGATCCAGCGTGGGAAAAAACTCTCCCGTGAGT 997
Query 779 TTGAGAAAACCCCTGGTCCAACTTATGTGGATGCTAAGGCAGCGAAAATTGCAGCAAACA 838
|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 998 ATGAGAAAATCCCTGGTCCAACTTATGTGGATGCTAAGGAAGCGAAAATTGTAGCAAACA 1057
Query 839 CCAACAATAAACCTCATCCAAATTATTCTGACGTTAGGCCTGCTGGACATTTGGTGCAGC 898
||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 1058 CCAACGATAAACCTCATCCAAAATACTCTGACGTTAAGCCTGCTGGACATTTGGTGCAGC 1117
Query 899 CAACTGCCCCTTCTGAAGTTGTGGAACGACCTAAGCTGAACCTGCTGCCTCGGAAAAAAC 958
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 1118 CAACTGCCCCTTCTGAAGTTGTGGAAAGACCTAAGCTGAACCTGCTTCCTCGGACAAAAC 1177
Query 959 CTCTTGAAAGCGTGGAGAAACCTGTGAATGATGGAAAACTGGAAAATGGTTCTTCAGTCC 1018
| |||||||| |||||||||||||||||||| | ||||||||||||| || |||||||||
Sbjct 1178 CACTTGAAAGTGTGGAGAAACCTGTGAATGACGAAAAACTGGAAAATAGTGCTTCAGTCC 1237
Query 1019 TTATTCAACGTGAAAGTGGTTATGCGACACAGAAAAGTGTGAACAATTCAAAATCTGGTT 1078
|||| |||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 1238 TTATACAACGTGAAA------ATGCGACACAGAAAAGTTTCAACAATTCAAAATCTGGTT 1291
Query 1079 TGTCTGCAGAT--G----CTTACCAACCGGCTGAGCGCCCCAAGTTGAATCTGAAGCCTG 1132
||||| ||||| | || |||| ||||||||||| ||||||||||||||||||||||
Sbjct 1292 TGTCTACAGATGAGATTCCTAACCAGCCGGCTGAGCGGCCCAAGTTGAATCTGAAGCCTG 1351
Query 1133 TGGCACAGTTGCTTGAGCAGCCAGAAGTTAAAACTGAAAAGGAAAGAAGTGCGGTTTTTG 1192
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1352 TGGCACAGTTGCTTGAGCAGCCAGAAGTTAAAACTGAAAAGGACAGAAGTGCGGTTTTTG 1411
Query 1193 GTGGTGCCAGACCACGAGAGCTGGTGTTGAAGGAGAGAGGCATTGATGAGACCGAGCATC 1252
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1412 GTGGTGCCAGACCACGAGAGCTGGTGTTGAAGGAGAGAGGCATTGATGAGCCCGAGCATC 1471
Query 1253 ACATATTGGAGCAACCGATAGACAGGATGGTCCTCAAACCGATTGAAAGAGCTCCAGAGC 1312
||| |||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1472 ACAAATTGGATCAACCGACAGATAGGATGGTCCTCAAACCGATTGAAAGAGTTCCAGAGC 1531
Query 1313 ATGCAATTCAAAGGCCAGTGAGTTCTCCCCGTGACTTGAGAACGAGGAAATTCGACCAAA 1372
|||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1532 ATGCAAGTCAAAGGCCAGTGAGTTCTCCACGTGACATGAGAACGAGGAAATTCGACCAAA 1591
Query 1373 AGGACGGGCGAAATGTAAGCGACGTTGCCAGATCCGAAACTCAGAGGAGAAACTGGCGTG 1432
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1592 AGGATGGGCGAAATGTAAGCGACATTGCCAGATCCGAAACTCAGAGGAGAAACTGGCGTG 1651
Query 1433 AAAATGAAAACAAGAGCTCAAGACAGCAACAGCAGACTCAGGAGAAGACAAGACATCCAT 1492
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 AAAATGAAAACAAGAGCGCAAGACAGCAACAGCAGACTCAGGAGAAGACAAGACATCCAT 1711
Query 1493 CACCGGTGACATGGCGAAAACCAGTTCCCCAGAAACCGGAATCACCAGATGGAACAGGGA 1552
|||| | |||||||||||| || ||||||||||||| ||| |||||| ||||||||||||
Sbjct 1712 CACCAGAGACATGGCGAAAGCCGGTTCCCCAGAAACTGGATTCACCAAATGGAACAGGGA 1771
Query 1553 TTCGTCACGGGAAAA-CAGCTTCTGCTCTTGAGCTAGCTCAAGCCTATTCTCCTTTCTCT 1611
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 TTCGTCAC-GGAAAAGCAGCTTCTGCTCTTGAGCTAGCTCAAGCCTATTCTCCTTTCTCT 1830
Query 1612 GACCCTAAATCTGGAATTGGAAGCAGCAACAGTTTTAACAAAAGCCGCAACAACCAAACG 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GACCCTAAATCTGGAATTGGAAGCAGCAACAGTTTTAACAAAAGCCGCAACAACCAAACG 1890
Query 1672 CAGCAGCAACCCTTCTCTCGGTTGGTAGGATCGACAACAACACCAAGACAGATTAATGGC 1731
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1891 CAGCAGCAACCCTTCTCTCGGTTGGTAGGATCGACAACAACAGGAAGACAGATTAATGGG 1950
Query 1732 TACTGA 1737
||||||
Sbjct 1951 TACTGA 1956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5