BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312181
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11490.1 | Symbols: | zinc finger (C2H2 type) family protei... 1498 0.0
> AT1G11490.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr1:3868884-3870065 REVERSE LENGTH=1098
Length=1098
Score = 1498 bits (811), Expect = 0.0
Identities = 1009/1103 (91%), Gaps = 19/1103 (2%)
Strand=Plus/Plus
Query 1 ATGCGTGGAGTTTGGCTTTATCTCAAGAAGTCTCTTAGCTGCTGC-AGTGCACAGAAGTC 59
|||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1 ATGCGTGGGGTTTGGCTTTATCTCAAGAAGTCTCTTAGCTGCTGCAAG-GCACAGAAGTC 59
Query 60 AACTGTCGCTTGTGATCGAGACAAGAACCAAATTC---AG-A--AGAATCCATCTGGATC 113
|||||| |||||||||| |||||||| |||||||| || | |||||||||||||||
Sbjct 60 AACTGTAGCTTGTGATCCAGACAAGATCCAAATTCAGAAGAAGGAGAATCCATCTGGATG 119
Query 114 CTC---AAGATCAATGTCAAATCTGAGAGATGTTTTTGGAACTAATGAAGATGAAGGAGC 170
||| |||||||||||| |||||||||||||| |||| |||||||| ||||||||||||
Sbjct 120 CTCAAGAAGATCAATGTCGAATCTGAGAGATGTCTTTGTAACTAATGGAGATGAAGGAGC 179
Query 171 TATGCAGAATCCAAGCTGCTGCAGCTCACGGTCTCTGGAGAGCTCCAGGTTTACAAACAC 230
|||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 180 TATGCAGAATGTAAGCTGCTGCAGCTCACGGTCTCTTGAGAGCTCCAGGTTTGTAAACAC 239
Query 231 TA-TGAAGTTTGAGGGGAATGCCA-GTTATTCAGACAGATTCAAAGGTTTGATCAGCGGA 288
| |||| ||||||| ||||| || |||||||||||||||||||||||||| | ||||||
Sbjct 240 -AGTGAAATTTGAGGAGAATG-CAGGTTATTCAGACAGATTCAAAGGTTTGCTTAGCGGA 297
Query 289 GCATCTTCATCTGATTTACTTCCCGGTCGTTGTTCAGAGAGATTTGATGTTGTTGGCTCT 348
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCATCTTCTTCTGATTTACTTCCCGGTCGTTGTTCAGAGAGATTTGATGTTGTTGGCTCT 357
Query 349 GACATCTGCGGTTTCGGAGTTCTTGCTTGTCGAAAATGTCATGAGAGAGTCAGAGATCTT 408
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 358 GACATCTGCGGTTTCGGAGTTCTTGCTTGTCAAAAATGTCATGAGAGAGTCAGAGATCTT 417
Query 409 GACGCGTTTGAGGCCCATTACCTCTCTAACCACTCTGTTATTAGACTCTTAGCAGGAGAT 468
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 GACGCGTTTGAAGCACATTACCTCTCTAACCACTCTGTCGTTAGACTCTTAGCAGGAGAT 477
Query 469 TTCTCAAGAACAACTGTTGAGTTAATCTGCAATACAGGCTTTTCTCACAAGCTTGGCAAA 528
||||||||||||||||| || |||||||||| ||||||| |||||||||||| ||||||
Sbjct 478 TTCTCAAGAACAACTGTGGAACTAATCTGCAACACAGGCTATTCTCACAAGCTAGGCAAA 537
Query 529 ACAAAAGGGAACAACATTTCGGCGATCTTGAAAATACA-AAGTTTGCAAAGAGTTGTTGC 587
| ||||||||||||||||| |||||||| ||||| || || || ||| |||||||||||
Sbjct 538 ATGAAAGGGAACAACATTTCAGCGATCTTTAAAATCCAGAACTT-GCAGAGAGTTGTTGC 596
Query 588 AGAGTTTGAAGATTACAGAGAACTTGTGAAAATAAGAGCGAACAAGCTTTCAAAGAAACA 647
||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 597 AGACTTTGAAGATTACAGAGAGCTCGTGAAAATAAGAGCAAACAAGCTTTCAAAGAAGCA 656
Query 648 CTCTCGATGTATGGCTGATGGGAACGAGTTTCTTGGGTTCCACGGTACAAGTCTTTCTTG 707
|||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 657 CTCTCGTTGTATGGCTGATGGCAACGAGTTTCTTGGGTTCCACGGTACAACTCTTTCTTG 716
Query 708 CGCTCTCGGTTTGAGAAACAGCTCTTCAAACCTCTGTTTCTCAGATCAATGTGGAGTTTG 767
| |||||||||| || |||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 717 CACTCTCGGTTTCAGTAACAGCTCTTCAAACCTCTGTTTCTCGGATCACTGTGAAGTTTG 776
Query 768 TCATATTCTAAGACATGGATTCAGTCCTAAAACAAGACCAGATGGGATTAAAGGGGTTCT 827
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 777 TCATATTCTAAGACATGGTTTCAGTCCTAAAACAAGACCAGATGGGATAAAAGGAGTTCT 836
Query 828 CACAGCATCATCAAGCTCTGCAGCTCTTAAAACTATCGAAACCGATCAAGGAAGAAACAG 887
|||||||||| | |||||| |||||||| || ||||||||||||||||||||||||| ||
Sbjct 837 CACAGCATCAACTAGCTCTACAGCTCTTGAATCTATCGAAACCGATCAAGGAAGAAATAG 896
Query 888 AGGTTCATTGAAAGCTGTTGTGCTATGTAGAGTTATTGCAGGTAGGGTTCATAAACCTAT 947
||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 897 AGGTTCATTGATAGCTGTTGTGCTATGTAGAGTGATTGCAGGGAGGGTTCATAAACCTAT 956
Query 948 GCAGAAGTTTGAAGATCCTTTAGGGTTTTCTGAGTTTGATTCATTGGCTTTGAAAGTGGG 1007
||||| ||||||| || |||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 957 GCAGACGTTTGAAAATTCTTTAGGGTTTTCTGAGTTTGATTCACTAGCTTTGAAAGTTGG 1016
Query 1008 ACCAAATTCTAGAATTGAAGAGCTTTATCTATTGAGTA-ATAAAGCTTTGTTACCTTGCT 1066
|| |||||| ||||||||||||||||| || ||||||| | |||||||||||||||||||
Sbjct 1017 ACAAAATTCAAGAATTGAAGAGCTTTACCTGTTGAGTACA-AAAGCTTTGTTACCTTGCT 1075
Query 1067 TTGTTATAATCTTCAAGCCTTGA 1089
|||| |||||||||||||| |||
Sbjct 1076 TTGTGATAATCTTCAAGCCATGA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5