BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312202
Length=1887
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11740.1 | Symbols: | ankyrin repeat family protein | chr1:... 2379 0.0
AT1G62050.1 | Symbols: | Ankyrin repeat family protein | chr1:... 470 3e-131
> AT1G11740.1 | Symbols: | ankyrin repeat family protein | chr1:3963054-3966824
REVERSE LENGTH=2198
Length=2198
Score = 2379 bits (1288), Expect = 0.0
Identities = 1507/1612 (93%), Gaps = 18/1612 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAGGTCATCGCCGGCGAATATTCCGGCCACTACTATAGATGATTATGCTCACAGT 60
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAAGGTCTTCGCCGGCAAATATTCCGGCCACTACTATAGATGATTATGCTCACAGT 60
Query 61 CCCGTCCACTACGCCGTCGTTGTAGGAGATCACGCCGGTTTGTCTCGTCTTGTTTCGTCT 120
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 61 CCCGTCCACTACGCCGTCGTTGTAGGAGATCACGCCGGTTTGACTCGTCTGGTTTCGTCT 120
Query 121 TTGCCTAAACTAACCGACCCGGAACAAATCCACACTGAGTCCGATTCAATGAGCCAAGAG 180
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 TTGCCTAAACTAACCGACCCGGAACAAATCCACACCGAGTCCGACTCAATGAGCCAAGAG 180
Query 181 CGAGTCGCGGAGCAAATCTCCACCGTCCTCGACCGCCGTGACGTTCCCTTTGGAGAGACG 240
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CGAGTCGCGGAGAAAATCTCCACCGTCATCGACCGCCGTGACGTTCCCTTTGGAGAGACG 240
Query 241 CCTCTCCATTTAGCGGTACGGATAGGCGACTTTTTGGCAGCGAAGACGATTTCTTCCGCC 300
|||||||||||||| ||||| | |||||| |||| || || ||||| || |||||||||
Sbjct 241 CCTCTCCATTTAGCCGTACGTCTCGGCGACGTTTTCGCGGCAAAGACTATATCTTCCGCC 300
Query 301 GGAGCTGATATCACGCTCCAAAACGCCGCCGGTTGGAA-TCCTTTGCACGAGGCTTTGTG 359
|| ||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||
Sbjct 301 GGTGCTGATATCACGCTCCAAAACGCCGCCGGGTGGAACTCCTT-GCATGAGGCTTTGTG 359
Query 360 TCGTCGAAACTCAGAGATCACGGAGACGATTCTCCGGAACCACCACCGTTCGGCGTGGAA 419
|||||| |||||||||||||||||| | ||||||||| |||| |||||||||||||||
Sbjct 360 TCGTCGGAACTCAGAGATCACGGAGGCAATTCTCCGGGACCATCACCGTTCGGCGTGGTG 419
Query 420 CAAATGGAGACGGAGACTTCCTCATCTCATCGCCGTGCTCAGCCGCATGAGAGATTTCTA 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 CAAATGGAGACGGAGACTTCCTCATCTCATCGCCGTACTCAGCCGCATGAGAGATTTCTA 479
Query 480 CATGGAGATATCGTTTCACTTCGAGAGCTCCGTGATTCCATTCGTCGGAAAAATCGCTCC 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATGGAGATATCATTTCACTTCGAGAGCTCCGTGATTCCATTCGTCGGAAAAATCGCTCC 539
Query 540 TTCCGATACTTACAAGATCTGGAAACGCGGCGGAGATTTACGCGCCGATACTTCATTAGC 599
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 TTCCGATACTTACAAGATATGGAAACGCGGTGGAGATTTACGCGCCGATACTTCATTAGC 599
Query 600 CGGATTCGACGGTTTCAAGATCCGCCGCGCGAATCAGAGCTTTCTCTTTCTTAGTGATGG 659
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 600 CGGATTCGACGGTTTCAAGATACGCCGCGCCAATCAGAGCTTTCTCTTTCTTAGTGATGG 659
Query 660 AGATGAGTTTCTTGATGTGTCTCCTGGTACATTGCTTGTGTTAAACAGAGACGATAAAAC 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 AGATGAGTTTCTTGATGTGTCTCCTGGTACGTTGCTTGTGTTAAACAGAGACGATAAAAC 719
Query 720 GATCTTGAACGCTTTCGAAAACGCTAAAGATCCGATTAGCGATAACGATATCGCCGGCTT 779
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 720 GATCTTGAACGCTTTCGAAAACGCTAAAGATCCGATTAGCGATAGCGATATAGCTGGCTT 779
Query 780 TTGTGGTCAATCTAGCTTGTACCGTCCTGGAATGGATGTTACTAAAGCAGAGCTCGTTGA 839
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 780 TTGTGGTCAATCTAGCTTGTACCGTCCGGGGATGGATGTTACTAAAGCAAAGCTCGTTGA 839
Query 840 GATAACGAATTGGCGACGGCAAGGGAAGGTTGAAACTGTCGGAGAATGGAAGGCTAAAGC 899
||| ||||||||||||||||||| |||| |||||||||||||||| ||||| ||||||||
Sbjct 840 GATTACGAATTGGCGACGGCAAGCGAAGATTGAAACTGTCGGAGAGTGGAAAGCTAAAGC 899
Query 900 TTACGATATCGAAAACGTAAGTTTTAGTTTCAAATCGAGAAAAGTCG-AAACAGAGCAGA 958
||||||| |||||||||| ||||||||||| ||||| |||||||||| ||| |||||||
Sbjct 900 TTACGATGTCGAAAACGTTAGTTTTAGTTTTAAATCAAGAAAAGTCGGAAA-AGAGCAGG 958
Query 959 GTTTGCCTTTGGACGAGAATCATTGGAGTGTATCAGAACCGTTACGGCGGCAGCCACAGC 1018
|||||| ||||||||||| || | ||||||| |||||||||||||||| |||| | ||
Sbjct 959 GTTTGCGTTTGGACGAGACTCGTCGGAGTGTGTCAGAACCGTTACGGCCGCAG--AG-GC 1015
Query 1019 GGCGATCTTCGCGGAGGAGGAGATCGGTTTCTTTACCGGAAGCGGCGATTCCGGTGGC-- 1076
|| || || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1016 GG-GA-----GCAGAGGAGGAGATCGGTTTCTTTACCGGAAGCGGCGATTCTGGTGGCGA 1069
Query 1077 -TTCTTCTGTGGCGCAGATCAAAGAAAAGGAGTTTGTGAAGAGTTTGAGTCCTTCGGTTT 1135
||||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1070 ATTCTTCTGTGGGGCGGATCAAAGAAAAGGAGATTGTGAAGAGTTTGCGTCCTTCGGTTT 1129
Query 1136 GGTTAACGGATCAGTTTCCTTTGAAAACAGAGGAGCTGCTTCCGTTGCTTGATATTTTAG 1195
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1130 GGTTAACGGATCAGTTTCCTTTGAAAACAGAGGAGTTGCTTCCGTTGCTTGATATTTTAG 1189
Query 1196 CCAACCATGTCAAGGCTGTTCGGAGAATGCGAGAGCTACTTACCACTAAGTTGCCGACGG 1255
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||
Sbjct 1190 CCAACCATGTCAAGGCTGTTCGGAGAATGCGAGAGCTGCTTACCACCAAGTTCCCGGCGG 1249
Query 1256 GAACTTTTCCGGTCAAGTTGTCCATACCGGTGATTCCAACAGTAAAAGTAGTCATGACAT 1315
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1250 GAACTTTTCCGGTCAAGTTGTCCATACCGGTGATCCCAACAGTAAAAGTAGTCATGACAT 1309
Query 1316 TCACCAAGTTCGTGGCTCTTCCACCGTTGGATGAATTCTACACACCGCTCTCAAGTCCAA 1375
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCAGCAAGTTCGTGGCTCTTCCACCGTTGGATGAATTCTACACACCGCTCTCAAGTCCAA 1369
Query 1376 ATCATCTTTTAGCTGCAGTGGAAGACCAACACGACGTGGACGATAATGAAAAATCAGATA 1435
| ||||| ||||||||| ||||||||||||| |||||| ||||| ||||||||| |||||
Sbjct 1370 AACATCTATTAGCTGCAATGGAAGACCAACATGACGTGCACGATGATGAAAAATTAGATA 1429
Query 1436 GAAGAATCTCAACTTCACGGCCATCGTTTTCAACACCTTCTTGGTTGAGACTAAACATCA 1495
|||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 1430 GAAGAATCTCAAGTTCACGTCCATCGTTTTCAACGCCTTCTTGGTTGAGACTGAACATCA 1489
Query 1496 ATGCCATCGGCAAGAGCTCACGGCGGCGTTTGGAGGATGAGGAACAAATGGTGGATCCAT 1555
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1490 ATGCCACCGGCAAGAGCTCACGGCGGCGTTTGGTGGATGAGGAACAAGTGGTGGATCCAT 1549
Query 1556 TCACGATACCAACAGGATATAAGTGGACTAGCTA-CTCAGATAAATCAGTCT 1606
|||||||||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct 1550 TCACGATACCAACAGGGTATAAGTGGACTAG-TAACTCAGATAATTCAGTCT 1600
Score = 451 bits (244), Expect = 1e-125
Identities = 273/287 (95%), Gaps = 2/287 (1%)
Strand=Plus/Plus
Query 1602 AGTCTTTACCGAGAAGAGCTCCAAGAATCAGAGACACATAAGATATTGGGAT-AGTTGTA 1660
|||||||||| |||||||||||||||||||||| ||||||||||||||||| | || ||
Sbjct 1656 AGTCTTTACCAAGAAGAGCTCCAAGAATCAGAGGTACATAAGATATTGGGATCA-TTATA 1714
Query 1661 ATATGGCGAGTGATGCACCTAGTTGGGCGGATCAATGGGGGACCGGAGGAATTGGGGTGA 1720
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 AAATGGCGAGTGAAGCACCTAGTTGGGCGGATCAATGGGGGACCGGAGGAATTGGGGTGA 1774
Query 1721 TGGCTGCGGAGGAGACAACTGACGGCAAAAAAGACGTCACCGGGAAAAAGTCTGGCAAGA 1780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1775 TGGCTGCGGAGGAGACAACTGACGGCAAAAAAGACGTCACCGGGAAAAAGTCCGGCAAGA 1834
Query 1781 CCAAAGCAGGCATCAACAAAGCCAAGATTGTTGTATTCATTGGTGTCAATTGGATGAAGA 1840
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1835 CCAAAGCAGGGATTAACAAAGCCAAGATTGTTGTATTTATTGGTGTCAATTGGATGAAGA 1894
Query 1841 ATCTTGTGCAGAGGAAGAAGAAGGACTCTACTTCTTCACAGATATAA 1887
||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1895 ATCTTGTGCAGAGGAAGAAGAAGGATTCTACTTCTTCATAGATATAA 1941
> AT1G62050.1 | Symbols: | Ankyrin repeat family protein | chr1:22936127-22939024
REVERSE LENGTH=2221
Length=2221
Score = 470 bits (254), Expect = 3e-131
Identities = 697/909 (77%), Gaps = 38/909 (4%)
Strand=Plus/Plus
Query 46 GATTA-TGCTCACAGTCCCGTCCACTACGCCGTCGTTGTAGGAGATCACGCCGGTTTGTC 104
||||| | |||||||||| || || |||||||||||| | |||||||||| | || |
Sbjct 199 GATTACT-CTCACAGTCCAGTTCATTACGCCGTCGTTTTGGGAGATCACGGTGCACTGAC 257
Query 105 TCGTCTTGTTTCGTCTTTGCCTAAACTAACCGACCCGGAACAAATCC-ACACTGAGTCCG 163
||||||| | || || ||||| || ||| || || ||||| |||| | || || ||||
Sbjct 258 TCGTCTTCTCTCTTCCTTGCCGAAGCTAGGAGATCCTGAACAGATCCGA-ACAGAATCCG 316
Query 164 ATTCAATGAGCCAAGAGCGAGTCGCGGAGCAAATCTCCACCGTCCTCGACCGCCGTGACG 223
| ||| |||| ||||||||||||||||| || |||||| |||| || ||||| || ||||
Sbjct 317 ACTCACTGAGTCAAGAGCGAGTCGCGGATCAGATCTCCGCCGTGCTTGACCGTCGCGACG 376
Query 224 TTCCCTT-TGGAGAGACGCCTCTCCATTTAGCGG-TACGGA-TAGGCGACTTT-TTGGCA 279
|| |||| | || |||||||| ||| | |||| || || | | ||| ||| || ||
Sbjct 377 TT-CCTTCACGCGAAACGCCTCTTCATCTGGCGGTTA--GACTCGACGA-TTTGTTCGCG 432
Query 280 GCGAAGACGATTTCTTCCGCCGGAGCTGATATCACGCTCCAAAACGCCGCCGGTTGGAAT 339
|||| | ||||||| || ||||| | |||||| || | || || || | || ||||||
Sbjct 433 GCGAGGGCGATTTCGTCGGCCGGTGGTGATATTTCGTTACAGAATGCTTCTGGATGGAAT 492
Query 340 CCTTTGCACGAGGC-TTTGTGTCGTCGAAACTCAGAGATCACGGAGA-CGATTCTCCGGA 397
|| || || ||||| ||| ||||| || || || ||| | | || | | || | |||
Sbjct 493 CCGTTACAAGAGGCGTTT-TGTCGCCGGAATTCTGAGGTTA-TGAAAGTGCTTTTACGGC 550
Query 398 ACCACCACCGTTCGGCGTGGAACAAATGGAGACGGAGACTT-CCTCATCTCATCGCCGTG 456
| |||||||||| || ||| |||||| | |||||| || |||| | | || || ||
Sbjct 551 ATCACCACCGTTTAGCTTGGTGTAAATGGCGGCGGAGA-TTACCTCGTTTGATAGCTGTT 609
Query 457 CTCAGCCGCATGAGAGATTTCTACATGGAGATATCGTTTCACTTCGAGAGCTCCGTGATT 516
||| | || ||||||||||| ||||||||||| || ||||| ||||||||||| ||||||
Sbjct 610 CTCCGTCGTATGAGAGATTTTTACATGGAGATCTCTTTTCATTTCGAGAGCTCTGTGATT 669
Query 517 CCATTCGTCGGAAAAATCGCTCCTTCCGATACTTACAAGATCTGGAAACGCGGCGG-AGA 575
|| |||||||||||||||||||| || ||||||||||||||||||||||||| ||| | |
Sbjct 670 CCGTTCGTCGGAAAAATCGCTCCCTCTGATACTTACAAGATCTGGAAACGCGACGGTA-A 728
Query 576 TTTACGCGCCGATACTTCATTAGCCGGATTCGACGGTTTCAAGATCCGCCGCGCGAATCA 635
| || || |||||| ||||||||||||| || ||||| || || | | ||| ||||
Sbjct 729 CCTCCGTGCTGATACTACATTAGCCGGATTTGATGGTTTAAAAATTCAAAGAGCGGATCA 788
Query 636 GAGCTTTCTCTTTCTTAGTGATGGAGATGAGTTTCTTGATGTGTCTCCTGGTA-CATTGC 694
|||||| | || || ||||||| ||||| | ||| ||| | |||||||| | | ||||
Sbjct 789 AAGCTTTTTATTCCTCGGTGATGGTGATGAATCTCTAGATATTTCTCCTGG-ATCTTTGC 847
Query 695 TTGT-GTTAAACAGAGACGAT---AAAACGATCTTGAACGCTTTCGAAAACGCTAAAGAT 750
|||| | || | |||||||| |||| ||| | ||||||| |||| || || |
Sbjct 848 TTGTACTGAATC-GAGACGATCGGAAAA--TTCTCG-ACGCTTTTGAAAGTGCCGGAGCT 903
Query 751 CCGATTAGCGA-TAACGATATCGCCGGCTTTTGTGGTCAATCTAGCTTGTACCGTCCTGG 809
|||||||| || | ||| |||||||| || ||| ||| || ||||| || ||||| ||
Sbjct 904 CCGATTAGTGACT-CCGACATCGCCGGATTCTGTTCTCAGTCAAGCTTATATCGTCCGGG 962
Query 810 AATGGATGTTACTAAAGCAGAGCTCGTTGAGAT-AACGAATTGGCGACGGCAAGGGAAGG 868
||||||||||||||||||||||||||| | || |||||||||||| ||||||| ||||
Sbjct 963 AATGGATGTTACTAAAGCAGAGCTCGTCG-GACGAACGAATTGGCGGCGGCAAGAGAAGA 1021
Query 869 TTGA-AACTGTCGGAGAATGGAAGGCTAAAGCTTACGATATCGA-AAACGTAAGTTTTAG 926
| || ||| |||||||||||||| |||| | |||||| ||| | ||| || | |||||
Sbjct 1022 TGGAGAAC-GTCGGAGAATGGAAAGCTAGGGTTTACGAAATCCAGAAA-GTGACATTTAG 1079
Query 927 TTTCAAATC 935
||||| |||
Sbjct 1080 TTTCAGATC 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93423214245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5