BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312221
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11920.1 | Symbols: | Pectin lyase-like superfamily protein... 1814 0.0
AT1G30350.1 | Symbols: | Pectin lyase-like superfamily protein... 575 3e-163
> AT1G11920.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:4023667-4025097 REVERSE LENGTH=1155
Length=1155
Score = 1814 bits (982), Expect = 0.0
Identities = 1100/1157 (95%), Gaps = 7/1157 (1%)
Strand=Plus/Plus
Query 1 ATGGcttctcttttcttaac-a--ctttcacttctctttgcagctttctcttcttttATT 57
|||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGGCTTCTCTTTTCTTAACAATTATTTCACTTCTCTTTGCAGCTTTCTCTTCTTCTGTT 60
Query 58 GTAGAGGCGGCTTACGGTAATGGTTATACAATTCCCAAACTATTACTAAATCCTATCGAT 117
|||||||| |||||| ||||||||||||| |||||||||||||||| ||| |||||||||
Sbjct 61 GTAGAGGCTGCTTACAGTAATGGTTATACCATTCCCAAACTATTACCAAACCCTATCGAT 120
Query 118 TCTTGCTGGCGAAGAAACCC-TAGTTGGGCGTTTAACCGTCGTTCTCTAGCCGATTGCGC 176
|||||||||||||||||||| || |||||||| |||||||||| | ||||||||||||||
Sbjct 121 TCTTGCTGGCGAAGAAACCCTTA-TTGGGCGTCTAACCGTCGTGCACTAGCCGATTGCGC 179
Query 177 GGTAGGGTTTGGGAAATCAGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 236
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGTAGGGTTTGGAAAATCTGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 239
Query 237 CCCATCAGACGACCCTGAAAACCCTAGACCAGGAACTCTTAGACACGCCGTGATCCAATC 296
|||||||||||||||||||||||||||||| ||||| || ||| |||| |||||||||||
Sbjct 240 CCCATCAGACGACCCTGAAAACCCTAGACCCGGAACACTGAGATACGCAGTGATCCAATC 299
Query 297 TAAACCACTATGGATCACATTCGCACGTGACATGGTCATAGTGTTGCGAAACGAACTCAT 356
||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 300 TAAACCATTATGGATCACATTTGCACGTGACATGGTCATAGTGTTGCGTAACGAGCTCAT 359
Query 357 CATGAACAGCTACAAGACGATCGATGGAAGAGGGGCAAAAGTGGAAATTGCCTATGGACC 416
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 360 CATGAACAGCTACAAGACGATTGATGGAAGAGGGGCTAAAGTGGAAATTGCCTATGGACC 419
Query 417 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 479
Query 477 TAAACCGGGTAAGTCGGGTCGGGTTCGGAGCAGCCCGACTCATGTTGGCAGCCGGAAAGG 536
|||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 480 TAAACCGGGTAAGTCGGGGCGGGTACGGAGCAGCCCGACCCATGTTGGTAGCCGGAAAGG 539
Query 537 ATCGGATGGTGACGCAATAGCCATTTTTGGTTCTTCACATATTTGGATTGATCATTGTTA 596
|||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 540 ATCGGACGGTGATGCAATAGCCATTTTTGATTCGTCACATATTTGGATTGATCATTGTTT 599
Query 597 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCGACGGCCGTCACTAT 656
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 600 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCTACGGCTGTCACTAT 659
Query 657 TTCTAATAACTACTTCACTCAGCATGATAAAGTGATGTTACTCGGACACAATGACAATAA 716
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 TTCTAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATAATGACAATAA 719
Query 717 TGTGGAAGATAAGAACATGAGAGTTACAATTGCATTCAACCATTTTGGACCGGGTCTTAT 776
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 720 TGTGGAAGATAAGATCATGAGAGTTACAATTGCGTTCAACCATTTCGGACCGGGTCTTAT 779
Query 777 TGAGAGAATGCCTAGAGTGCGAAGAGGGTATGCGCATGTAGCAAACAATAGGTACGAGAA 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 TGAGAGAATGCCTAGAGTGCGAAGAGGATATGCGCATGTAGCAAACAATAGGTACGAGAA 839
Query 837 GTGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATCTTTAGTGAAGGCAACTA 896
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 ATGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATTTTTAGTGAAGGCAACTA 899
Query 897 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 959
Query 957 TGATTGGAGGAGATGGAAATGGAGAACGTCCAAAGACGTTTTCAAGAATGGAGCTTACTT 1016
|||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 960 TGATTGGAAGAGATGGAAATGGAGAACGTCCAAAGACGTTTTTAAGAACGGAGCTTACTT 1019
Query 1017 CGTGCCGTCTGGCTACGGAACCGTAACGCCGTTGTACGGAAGAGCAGAGTGGTTTCCGGT 1076
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1020 CGTGCCTTCTGGCTACGGAACCGTCACGCCGTTGTACGGAAGAGCAGAGCGGTTTCCGGT 1079
Query 1077 GTCTCACGGCTCTCTCGTCCCTTCT-CTTACTTCGTCCGCCGGTCCTCTCCATTGCTATT 1135
||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 1080 GTCTCACGGCTCTCTCGTCCCTT-TGCTTACTTCATCCGCCGGTCCTCTCCATTGCTATT 1138
Query 1136 CCGGCAGAATTTGCTAA 1152
|||||||||||||||||
Sbjct 1139 CCGGCAGAATTTGCTAA 1155
> AT1G30350.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:10710079-10711664 REVERSE LENGTH=1222
Length=1222
Score = 575 bits (311), Expect = 3e-163
Identities = 520/620 (84%), Gaps = 17/620 (3%)
Strand=Plus/Plus
Query 540 GGATGGTGACGCAATAGC-CATTTTTGGTTCTTCACATATTTGGATTGATCATTGTTACT 598
||||||||| | |||| | | ||||| ||| ||||| ||||||| |||||||||| |
Sbjct 498 GGATGGTGATGGAATA-CGCGTTTTTCAATCTACACATGTTTGGATCGATCATTGTTTCC 556
Query 599 TTTCTCGGTGTCAAGATGGTTTGATCGATGT-ACTTCATGCTTCGACGGCCGTCACTATT 657
|||||||||| || ||||||||||||||||| | || | |||| ||||| ||||| |||
Sbjct 557 TTTCTCGGTGCCATGATGGTTTGATCGATGTGA-TTGTTTCTTCTACGGCTGTCACGATT 615
Query 658 TCTAATAACTACTTCACTCAGCATGATAAAGTGATGTTACTCGGACACAATGACAATAAT 717
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||| | ||
Sbjct 616 TCAAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATGATGACAGTTAT 675
Query 718 GTGGAAGATAAGAACATGAGAGTTACAATTGCATTCAACCA-TTTTGGACCGGGTCTTAT 776
||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 676 ATGGGAGATAAGGACATGAGAGTTACAATTGCATTCAA-TACTTTTGGACCGGGTCTCAT 734
Query 777 TGAGAGAATGCCTAGAGTGCGAAGAGGGTATGCGCATGTAGCAAACAATAGGTACGAGAA 836
||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||
Sbjct 735 TGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCACATGTAGCAAACAATAGGTACGAGAA 794
Query 837 GTGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATCTTTAGTGAAGGCAACTA 896
||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 795 ATGGCAAATGTACGCGATCGGAGGAAGTGCTAATCCAATTATCTTTAGTGAAGGCAACTA 854
Query 897 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAG-TGGAT 955
|||||||||| | || | | ||||| ||||||||||| || ||||| ||| | ||||
Sbjct 855 CTTCGTTGCTCCCGAAAAACGTAGCAGCAAACAGGTGACGAAGAGAAT-GATGGCTGGAC 913
Query 956 ATGATTGGAGGAGATGGAAATGGAGAACGTCCAAAGACGTTTTCAAGAATGGAGCTTACT 1015
||||| | |||||||||||| | ||||| | ||| ||||||| ||| ||||||| ||
Sbjct 914 CTGATTCTAAAAGATGGAAATGGGGTACGTCTAGAGATGTTTTCATGAACGGAGCTTTCT 973
Query 1016 TCGTG-CCGTCTGGCTACGGAACCGTAACGCCGTTGTACGGAAG-AGCAGAGTGGTTTCC 1073
||| | ||| | || | | || || | |||||||||| ||| || |||| ||||||
Sbjct 974 TCG-GACCGCCAGG--A-GTAATAGTCAGGCCGTTGTACA-AAGGAGGAGAGGGGTTTCG 1028
Query 1074 GGTGTCTCACGGCTCTCTCGTCCCTTCTCTTACTTCGTCCGCCGGTCCTCTCCATTGCTA 1133
|||| | || |||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1029 GGTGGCACATGGCTCTCTCGTCCCTTCTCTTACTTCCTCTGCCGGTCCTCTCCGTTGCTA 1088
Query 1134 T-TCCGGCAGAATTTGCTAA 1152
|| ||||| |||||||||
Sbjct 1089 CGTC-GGCAGGATTTGCTAA 1107
Score = 377 bits (204), Expect = 1e-103
Identities = 396/488 (81%), Gaps = 16/488 (3%)
Strand=Plus/Plus
Query 1 ATGGcttctcttttcttaacactttcacttctctttgcagctttctcttcttttATTGTA 60
||||||||||| | ||| | ||||||||||||| ||||||||| ||||| | || ||
Sbjct 1 ATGGCTTCTCTCGTGGTAATAGTTTCACTTCTCTTGGCAGCTTTCGCTTCTCCTCTTTTA 60
Query 61 GAGGCGGCTTACGGTAATGGT-TATACAATTCCCAAACTATTACTAAATCCTATCGATTC 119
||| | ||| | || || | || || |||| ||| ||||||||| || ||| |
Sbjct 61 GAGACTGCTCATAGTTATAATGTA-ACCGCCCCCAGGGTATCACTAAATCCAATTGATGC 119
Query 120 TTGCTGGCGAAGAAACCCTAGTTGGGCGTTTAACCGTCGTTCTCTAGC-CGATTGCGCGG 178
|||||||||||||||||||| |||||| ||| |||| | ||||| | |||||||||
Sbjct 120 TTGCTGGCGAAGAAACCCTAAATGGGCGACTAATCGTCAAGCCCTAGCAC-ATTGCGCGG 178
Query 179 TAGGGTTTGGGAAATCAGCGGTTGGGGGGAAATACGGGT-CGATCTACGTGGTTACAAAC 237
|||||| |||||| |||| | ||||| ||| || ||| ||||||||||||||||||||
Sbjct 179 TAGGGTACGGGAAAGCAGCAATAGGGGGAAAAAAC-GGTCCGATCTACGTGGTTACAAAC 237
Query 238 CCATCAGACGACCCTGA-AAACCCTAGACCAGGAACTCTT-AGACACGCCGTGATCCAAT 295
||||||||| ||||| | | |||||| || ||||| ||| ||| | || |||| ||||
Sbjct 238 CCATCAGACAACCCT-ACACGCCCTAGCCCCGGAAC-CTTAAGATATGCGGTGAGCCAAC 295
Query 296 CTAAACCACTATGGATCACATTCGCACGTGACATGGTCATAGTGTTGCGAAA-CGAACTC 354
||||||| || ||||||||||| |||||||||||||| ||||||||| ||| | | |||
Sbjct 296 CTAAACCGCTGTGGATCACATTTGCACGTGACATGGTGATAGTGTTG-AAAAGCCAGCTC 354
Query 355 ATCATGAACAGCTACAAGACGATCGATGGAAGAGGGGCAAAAGTGGAAATTGCCTATGGA 414
|| || |||||||||||||| ||||| |||||||||||||| || ||||||||| | |||
Sbjct 355 ATGATTAACAGCTACAAGACAATCGACGGAAGAGGGGCAAAGGTTGAAATTGCCAACGGA 414
Query 415 CCATGCATAACGATCCA-ACATGTG-AGCCATGTCATTATACATGGGATAAGTATCCATG 472
|||||| ||| ||| || ||| ||| || |||||||||||||||||||||||||||||||
Sbjct 415 CCATGCTTAAGGAT-CAGACAAGTGAAG-CATGTCATTATACATGGGATAAGTATCCATG 472
Query 473 ATTGTAAA 480
||||||||
Sbjct 473 ATTGTAAA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5