BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312221 Length=1152 Score E Sequences producing significant alignments: (Bits) Value AT1G11920.1 | Symbols: | Pectin lyase-like superfamily protein... 1814 0.0 AT1G30350.1 | Symbols: | Pectin lyase-like superfamily protein... 575 3e-163 > AT1G11920.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:4023667-4025097 REVERSE LENGTH=1155 Length=1155 Score = 1814 bits (982), Expect = 0.0 Identities = 1100/1157 (95%), Gaps = 7/1157 (1%) Strand=Plus/Plus Query 1 ATGGcttctcttttcttaac-a--ctttcacttctctttgcagctttctcttcttttATT 57 |||||||||||||||||||| | |||||||||||||||||||||||||||||| | || Sbjct 1 ATGGCTTCTCTTTTCTTAACAATTATTTCACTTCTCTTTGCAGCTTTCTCTTCTTCTGTT 60 Query 58 GTAGAGGCGGCTTACGGTAATGGTTATACAATTCCCAAACTATTACTAAATCCTATCGAT 117 |||||||| |||||| ||||||||||||| |||||||||||||||| ||| ||||||||| Sbjct 61 GTAGAGGCTGCTTACAGTAATGGTTATACCATTCCCAAACTATTACCAAACCCTATCGAT 120 Query 118 TCTTGCTGGCGAAGAAACCC-TAGTTGGGCGTTTAACCGTCGTTCTCTAGCCGATTGCGC 176 |||||||||||||||||||| || |||||||| |||||||||| | |||||||||||||| Sbjct 121 TCTTGCTGGCGAAGAAACCCTTA-TTGGGCGTCTAACCGTCGTGCACTAGCCGATTGCGC 179 Query 177 GGTAGGGTTTGGGAAATCAGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 236 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GGTAGGGTTTGGAAAATCTGCGGTTGGGGGGAAATACGGGTCGATCTACGTGGTTACAAA 239 Query 237 CCCATCAGACGACCCTGAAAACCCTAGACCAGGAACTCTTAGACACGCCGTGATCCAATC 296 |||||||||||||||||||||||||||||| ||||| || ||| |||| ||||||||||| Sbjct 240 CCCATCAGACGACCCTGAAAACCCTAGACCCGGAACACTGAGATACGCAGTGATCCAATC 299 Query 297 TAAACCACTATGGATCACATTCGCACGTGACATGGTCATAGTGTTGCGAAACGAACTCAT 356 ||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 300 TAAACCATTATGGATCACATTTGCACGTGACATGGTCATAGTGTTGCGTAACGAGCTCAT 359 Query 357 CATGAACAGCTACAAGACGATCGATGGAAGAGGGGCAAAAGTGGAAATTGCCTATGGACC 416 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 360 CATGAACAGCTACAAGACGATTGATGGAAGAGGGGCTAAAGTGGAAATTGCCTATGGACC 419 Query 417 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ATGCATAACGATCCAACATGTGAGCCATGTCATTATACATGGGATAAGTATCCATGATTG 479 Query 477 TAAACCGGGTAAGTCGGGTCGGGTTCGGAGCAGCCCGACTCATGTTGGCAGCCGGAAAGG 536 |||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| Sbjct 480 TAAACCGGGTAAGTCGGGGCGGGTACGGAGCAGCCCGACCCATGTTGGTAGCCGGAAAGG 539 Query 537 ATCGGATGGTGACGCAATAGCCATTTTTGGTTCTTCACATATTTGGATTGATCATTGTTA 596 |||||| ||||| |||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 540 ATCGGACGGTGATGCAATAGCCATTTTTGATTCGTCACATATTTGGATTGATCATTGTTT 599 Query 597 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCGACGGCCGTCACTAT 656 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 600 CTTTTCTCGGTGTCAAGATGGTTTGATCGATGTACTTCATGCTTCTACGGCTGTCACTAT 659 Query 657 TTCTAATAACTACTTCACTCAGCATGATAAAGTGATGTTACTCGGACACAATGACAATAA 716 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 660 TTCTAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATAATGACAATAA 719 Query 717 TGTGGAAGATAAGAACATGAGAGTTACAATTGCATTCAACCATTTTGGACCGGGTCTTAT 776 |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 720 TGTGGAAGATAAGATCATGAGAGTTACAATTGCGTTCAACCATTTCGGACCGGGTCTTAT 779 Query 777 TGAGAGAATGCCTAGAGTGCGAAGAGGGTATGCGCATGTAGCAAACAATAGGTACGAGAA 836 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 780 TGAGAGAATGCCTAGAGTGCGAAGAGGATATGCGCATGTAGCAAACAATAGGTACGAGAA 839 Query 837 GTGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATCTTTAGTGAAGGCAACTA 896 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 840 ATGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATTTTTAGTGAAGGCAACTA 899 Query 897 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAGTGGATA 959 Query 957 TGATTGGAGGAGATGGAAATGGAGAACGTCCAAAGACGTTTTCAAGAATGGAGCTTACTT 1016 |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 960 TGATTGGAAGAGATGGAAATGGAGAACGTCCAAAGACGTTTTTAAGAACGGAGCTTACTT 1019 Query 1017 CGTGCCGTCTGGCTACGGAACCGTAACGCCGTTGTACGGAAGAGCAGAGTGGTTTCCGGT 1076 |||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1020 CGTGCCTTCTGGCTACGGAACCGTCACGCCGTTGTACGGAAGAGCAGAGCGGTTTCCGGT 1079 Query 1077 GTCTCACGGCTCTCTCGTCCCTTCT-CTTACTTCGTCCGCCGGTCCTCTCCATTGCTATT 1135 ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| Sbjct 1080 GTCTCACGGCTCTCTCGTCCCTT-TGCTTACTTCATCCGCCGGTCCTCTCCATTGCTATT 1138 Query 1136 CCGGCAGAATTTGCTAA 1152 ||||||||||||||||| Sbjct 1139 CCGGCAGAATTTGCTAA 1155 > AT1G30350.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:10710079-10711664 REVERSE LENGTH=1222 Length=1222 Score = 575 bits (311), Expect = 3e-163 Identities = 520/620 (84%), Gaps = 17/620 (3%) Strand=Plus/Plus Query 540 GGATGGTGACGCAATAGC-CATTTTTGGTTCTTCACATATTTGGATTGATCATTGTTACT 598 ||||||||| | |||| | | ||||| ||| ||||| ||||||| |||||||||| | Sbjct 498 GGATGGTGATGGAATA-CGCGTTTTTCAATCTACACATGTTTGGATCGATCATTGTTTCC 556 Query 599 TTTCTCGGTGTCAAGATGGTTTGATCGATGT-ACTTCATGCTTCGACGGCCGTCACTATT 657 |||||||||| || ||||||||||||||||| | || | |||| ||||| ||||| ||| Sbjct 557 TTTCTCGGTGCCATGATGGTTTGATCGATGTGA-TTGTTTCTTCTACGGCTGTCACGATT 615 Query 658 TCTAATAACTACTTCACTCAGCATGATAAAGTGATGTTACTCGGACACAATGACAATAAT 717 || |||||||||||||| ||||||||||||||||||||||||||||| |||||| | || Sbjct 616 TCAAATAACTACTTCACGCAGCATGATAAAGTGATGTTACTCGGACATGATGACAGTTAT 675 Query 718 GTGGAAGATAAGAACATGAGAGTTACAATTGCATTCAACCA-TTTTGGACCGGGTCTTAT 776 ||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||| || Sbjct 676 ATGGGAGATAAGGACATGAGAGTTACAATTGCATTCAA-TACTTTTGGACCGGGTCTCAT 734 Query 777 TGAGAGAATGCCTAGAGTGCGAAGAGGGTATGCGCATGTAGCAAACAATAGGTACGAGAA 836 ||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||| Sbjct 735 TGAGAGAATGCCTAGGGTGAGGAGAGGGTATGCACATGTAGCAAACAATAGGTACGAGAA 794 Query 837 GTGGCAAATGTATGCGATCGGAGGAAGTGCTGATCCAACCATCTTTAGTGAAGGCAACTA 896 ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 795 ATGGCAAATGTACGCGATCGGAGGAAGTGCTAATCCAATTATCTTTAGTGAAGGCAACTA 854 Query 897 CTTCGTTGCTTCTGATGACCCTAGCAAAAAACAGGTGACAAAAAGAATAGATAG-TGGAT 955 |||||||||| | || | | ||||| ||||||||||| || ||||| ||| | |||| Sbjct 855 CTTCGTTGCTCCCGAAAAACGTAGCAGCAAACAGGTGACGAAGAGAAT-GATGGCTGGAC 913 Query 956 ATGATTGGAGGAGATGGAAATGGAGAACGTCCAAAGACGTTTTCAAGAATGGAGCTTACT 1015 ||||| | |||||||||||| | ||||| | ||| ||||||| ||| ||||||| || Sbjct 914 CTGATTCTAAAAGATGGAAATGGGGTACGTCTAGAGATGTTTTCATGAACGGAGCTTTCT 973 Query 1016 TCGTG-CCGTCTGGCTACGGAACCGTAACGCCGTTGTACGGAAG-AGCAGAGTGGTTTCC 1073 ||| | ||| | || | | || || | |||||||||| ||| || |||| |||||| Sbjct 974 TCG-GACCGCCAGG--A-GTAATAGTCAGGCCGTTGTACA-AAGGAGGAGAGGGGTTTCG 1028 Query 1074 GGTGTCTCACGGCTCTCTCGTCCCTTCTCTTACTTCGTCCGCCGGTCCTCTCCATTGCTA 1133 |||| | || |||||||||||||||||||||||||| || ||||||||||||| |||||| Sbjct 1029 GGTGGCACATGGCTCTCTCGTCCCTTCTCTTACTTCCTCTGCCGGTCCTCTCCGTTGCTA 1088 Query 1134 T-TCCGGCAGAATTTGCTAA 1152 || ||||| ||||||||| Sbjct 1089 CGTC-GGCAGGATTTGCTAA 1107 Score = 377 bits (204), Expect = 1e-103 Identities = 396/488 (81%), Gaps = 16/488 (3%) Strand=Plus/Plus Query 1 ATGGcttctcttttcttaacactttcacttctctttgcagctttctcttcttttATTGTA 60 ||||||||||| | ||| | ||||||||||||| ||||||||| ||||| | || || Sbjct 1 ATGGCTTCTCTCGTGGTAATAGTTTCACTTCTCTTGGCAGCTTTCGCTTCTCCTCTTTTA 60 Query 61 GAGGCGGCTTACGGTAATGGT-TATACAATTCCCAAACTATTACTAAATCCTATCGATTC 119 ||| | ||| | || || | || || |||| ||| ||||||||| || ||| | Sbjct 61 GAGACTGCTCATAGTTATAATGTA-ACCGCCCCCAGGGTATCACTAAATCCAATTGATGC 119 Query 120 TTGCTGGCGAAGAAACCCTAGTTGGGCGTTTAACCGTCGTTCTCTAGC-CGATTGCGCGG 178 |||||||||||||||||||| |||||| ||| |||| | ||||| | ||||||||| Sbjct 120 TTGCTGGCGAAGAAACCCTAAATGGGCGACTAATCGTCAAGCCCTAGCAC-ATTGCGCGG 178 Query 179 TAGGGTTTGGGAAATCAGCGGTTGGGGGGAAATACGGGT-CGATCTACGTGGTTACAAAC 237 |||||| |||||| |||| | ||||| ||| || ||| |||||||||||||||||||| Sbjct 179 TAGGGTACGGGAAAGCAGCAATAGGGGGAAAAAAC-GGTCCGATCTACGTGGTTACAAAC 237 Query 238 CCATCAGACGACCCTGA-AAACCCTAGACCAGGAACTCTT-AGACACGCCGTGATCCAAT 295 ||||||||| ||||| | | |||||| || ||||| ||| ||| | || |||| |||| Sbjct 238 CCATCAGACAACCCT-ACACGCCCTAGCCCCGGAAC-CTTAAGATATGCGGTGAGCCAAC 295 Query 296 CTAAACCACTATGGATCACATTCGCACGTGACATGGTCATAGTGTTGCGAAA-CGAACTC 354 ||||||| || ||||||||||| |||||||||||||| ||||||||| ||| | | ||| Sbjct 296 CTAAACCGCTGTGGATCACATTTGCACGTGACATGGTGATAGTGTTG-AAAAGCCAGCTC 354 Query 355 ATCATGAACAGCTACAAGACGATCGATGGAAGAGGGGCAAAAGTGGAAATTGCCTATGGA 414 || || |||||||||||||| ||||| |||||||||||||| || ||||||||| | ||| Sbjct 355 ATGATTAACAGCTACAAGACAATCGACGGAAGAGGGGCAAAGGTTGAAATTGCCAACGGA 414 Query 415 CCATGCATAACGATCCA-ACATGTG-AGCCATGTCATTATACATGGGATAAGTATCCATG 472 |||||| ||| ||| || ||| ||| || ||||||||||||||||||||||||||||||| Sbjct 415 CCATGCTTAAGGAT-CAGACAAGTGAAG-CATGTCATTATACATGGGATAAGTATCCATG 472 Query 473 ATTGTAAA 480 |||||||| Sbjct 473 ATTGTAAA 480 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56525813670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5