BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312224
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11940.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1934 0.0
AT1G62305.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 774 0.0
> AT1G11940.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:4031574-4034078
REVERSE LENGTH=1478
Length=1478
Score = 1934 bits (1047), Expect = 0.0
Identities = 1117/1152 (97%), Gaps = 0/1152 (0%)
Strand=Plus/Plus
Query 1 ATGACGAGGAAATCGCAGCCGCAGATTCAGCCTCCATTGTCACGTCGCGGCGGCGTAGTG 60
||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||| |||
Sbjct 133 ATGACGAAGAAATCACAGCCGCAGATTCCGCCTCCATTGTCCCGTCGCGGCGGCGTCGTG 192
Query 61 TGGCTAGGATGGAAGCTCGTAATCGCTTTCTCCGTCGCGCTTTGCCTTCTTGCTCTCCTC 120
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 193 TGGCTGGGATGGAAACTCGTAATCGCTTTCTCCGTCGCGCTTTGCCTTCTTGCTCTTCTT 252
Query 121 CGAATCCAACTACAGTACAATTCCGTCACGACATTGCCGTCGCCGCTCTCCGTCGCGAGA 180
|||||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||
Sbjct 253 CGAATCCAACTACAGTACAATTCCTTCACGACATTGTCGTTTCCACTCTCCGTCGCGAGA 312
Query 181 TCTCAGACACCGCTTCACAAATACTCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TCTCAGACACCGCTTCACAAATACTCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTA 372
Query 241 GCTCGCCGTGACCTCCCACTTGATTTTATGTGGGATAGATTCTTCAAGGGTGTGGATCAT 300
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 373 GCTCGCCGTGATCTCCCACTTGATTTTATGTGGGATAGATTCTTCAAGGGAGTGGATCAT 432
Query 301 GCGAATTTCTCAATTTATATACATTCATTACCTGGTTTCGTGTTCAATGAAGACACTACA 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 433 GCGAATTTCTCAATTTATATACATTCAGTACCTGGTTTCGTGTTCAATGAAGAAACTACA 492
Query 361 CGATCACAGTATTTCTACAATCGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAA 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CGATCACAGTATTTCTATAATCGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAA 552
Query 421 TCAAGCATGATTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCCAAT 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TCAAGCATGATTGAAGCAGAAAGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCCAAT 612
Query 481 CAAATATTTGTTCTTCTCTCTGACAGATGTGCTCCGTTATATGACTTTGGCTATATATAC 540
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 613 CAAAGATTTGTTCTTCTCTCTGACAGATGTGCTCCATTATATGACTTTGGCTATATATAC 672
Query 541 AGATATCTTATCTCTTCACCAAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA 600
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 673 AAATATCTTATCTCTTCACCGAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA 732
Query 601 CGGTACAGTGTGAAAATGTCTCCTGTCATACCTGAAGAGAAATGGCGGAAAGGATCCCAG 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 733 CGGTACAGTGTGAAAATGTCTCCTGTCATACCTGAAGAGAAATGGCGAAAAGGATCCCAG 792
Query 661 TGGATAGATTTGATCAGAAGTCATGCAGAGGTCATTGTAAATGATGGTATCGTATTCCCA 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGGATAGCTTTGATCAGAAGTCATGCAGAGGTCATTGTAAATGATGGTATCGTATTCCCA 852
Query 721 GTTTTTAAGGAATTCTGCAAGAGATGTCCACCTTTAGGTACCAATGAGGCATGGTTGTTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GTTTTTAAGGAATTCTGCAAGAGATGTCCACCTTTAGGTACCAATGAGGCATGGTTGTTT 912
Query 781 CTTAAACAGAAACGGCGCAACTGCATCCCCGATGAACACTATGTGCAAACATTGCTTACG 840
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 CTTAAACAGAAGCGACGCAACTGCATCCCCGATGAACACTATGTGCAAACATTGCTTACG 972
Query 841 ATGCAAGGGCTAGAGAGTGAAATGGAACGAAGAACAGTGACATACACTGCATGGAACGTT 900
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 973 ATGCAAGGACTAGAGAGTGAAATGGAACGAAGAACAGTGACATACACTGTATGGAACGTT 1032
Query 901 TCAGGTACAAAATATGAAGCCAAATCTTGGCATCCCGTCACTTTCACATTGGAAAACTCC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TCAGGTACAAAATATGAAGCCAAATCTTGGCATCCCGTCACTTTCACATTGGAAAACTCC 1092
Query 961 GGTCCTGAGGAAATAAAAGAAATAAAGAAAATAGACCATGTCTATTACGAGTCTGAATCT 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 GGCCCTGAGGAAATAAAAGAAATAAAGAAAATAGACCATGTCTATTACGAGTCTGAATCT 1152
Query 1021 CGAACGGAATGGTGTAAGGCGGATTCAAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAG 1080
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1153 CGAACGGAATGGTGTAAGGCGGATTCGAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAG 1212
Query 1081 TTCACAAATGAAGCTGCTATGCGCATTGTGAGTGAAGGACTAATAGGATCATCAACAAAC 1140
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1213 TTCACGAATGAAGCTGCTATGCGCATTGTGAGTGAAGGACTAATAGGATCATCAGCAAAC 1272
Query 1141 ACAACCTTATAA 1152
| ||||||||||
Sbjct 1273 AAAACCTTATAA 1284
> AT1G62305.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr1:23026776-23029339
REVERSE LENGTH=1500
Length=1500
Score = 774 bits (419), Expect = 0.0
Identities = 833/1027 (81%), Gaps = 52/1027 (5%)
Strand=Plus/Plus
Query 148 ACGACATTGCCGTCGCCGCTCTCCGTCGCGAGATCTCAGACA-CCGCT-TC-ACAAATAC 204
|||||| || | ||| | ||||||||||||||||||| | | || || || ||||||
Sbjct 283 ACGACACTGTCTTCGTCTCTCTCCGTCGCGAGATCTC-G-TATCC-CTCTCGTTAAATAC 339
Query 205 TCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTAGCTCGCCGTGACCTCCCACTTGAT 264
||||| ||||||||||| ||||| ||||||||| | ||||| ||||| | |||||||||
Sbjct 340 TCCGGCGATCGTCCCAAACTCGCCTTCCTTTTCCTCGCTCGACGTGATTTGCCACTTGAT 399
Query 265 TTTATGTGGGATAGATTCTTCAAGGGTGTGGATCATG-CGAATTTCTCAATTTATATACA 323
||| | ||||| |||||||||||| ||| ||||| | |||||||||||| ||| ||||
Sbjct 400 TTTCTCTGGGACAGATTCTTCAAGAGTGCAGATCA-GAGGAATTTCTCAATCTATGTACA 458
Query 324 TTCATTACCTGGTTTCGTGTTCAATGAAGACA-CTACACGATCACAGTAT-TTCTACAAT 381
|||| ||||||||||||| ||| ||||| || | ||| ||||||| | | |||||||||
Sbjct 459 TTCAATACCTGGTTTCGTATTCGATGAA-TCATCCACAAGATCACA-TTTCTTCTACAAT 516
Query 382 CGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAATCAAGCATGATTGCAGCAGAA 441
|| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 517 CGTCAATTGAAGAATAGCATTGAGGTAGTTTGGGGAGAATCAAGCATGATTGCAGCAGAA 576
Query 442 AGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCC-AATCAAATATTTGTTCTTCTCTC 500
||||||||||||||||||||||| || |||| || | ||||||| |||||||||| | ||
Sbjct 577 AGATTGTTGCTTGCATCTGCTTTGGAAGATC-CTTCTAATCAAAGATTTGTTCTTTTGTC 635
Query 501 TGACAGATGTGCTCCGTTATATGACTTTGGCTATATATACAGATATCTTA-TCTCTTCAC 559
||| || |||| ||||||||| |||||||| || || ||||||||||| | | |||||||
Sbjct 636 TGATAGCTGTGTTCCGTTATACGACTTTGGTTACATTTACAGATATCT-AGTTTCTTCAC 694
Query 560 CAAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA-CGGTACAGTGTGAAAATG 618
||| ||||||||| || || || ||| ||| || || | | || |||| | ||||||||
Sbjct 695 CAAAGAGTTTTGTAGACAGCTTCCTTGATA--AA-GATA-ATCGCTACACTATGAAAATG 750
Query 619 TCTCCTGTCATACCTGAA-GAGAAATGGCGGAAAGGATCCCAGTGGATAG-ATTTGATCA 676
| |||||| |||| ||| || |||||||| |||||||| ||||||||| ||| |||||
Sbjct 751 TTTCCTGTTATACG-GAAAGAAAAATGGCGAAAAGGATCTCAGTGGATATCATT-GATCA 808
Query 677 GAAGTCATGCAGAGGTCATTGTAAATGATGGTA-TCGTATTCCCAGTTTTTAAGGAATTC 735
|||| ||||||||||||||||| ||||||| || | || ||||| |||||| || ||||
Sbjct 809 GAAGCCATGCAGAGGTCATTGTTAATGATGATACT-GTGTTCCCTGTTTTTCAGAAATTT 867
Query 736 TGCAAGAGATGTCCACCTTTAGG-TACCA-ATGAGGCAT-GGTTGTTTCTTAAACAGAAA 792
|||||| ||| || |||| | || | ||| | || || || | | ||||||| |||
Sbjct 868 TGCAAGCGATCTCTACCTCT-GGATCCCAGAA-AGA-ATTGGCTATATCTTAAAAAGAGG 924
Query 793 CGGCGCAACTGCATCCCCGATGAACACTATGTGCAAACAT-TGCTTACGATGCAAGGGCT 851
|| | |||||| ||||| ||||||||||| |||||||| | | || || |||| || ||
Sbjct 925 CGACACAACTGTATCCCTGATGAACACTACGTGCAAAC-TCTACTAACAATGCGTGG-CT 982
Query 852 AG-AGAGTGAAATGGAACGAAGAACAGTGACATACACTGCATGGAACGTTTCAGGTACAA 910
| | | |||||||||||| ||||||||||||||||| |||||||| | |||| | ||
Sbjct 983 TGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCAAAAA 1042
Query 911 AATATGAAGCCAAATCTTGGCATCC-CGTCACTTTCACAT-TGGAAAACTCCGGTCCTGA 968
|| |||||| |||||||||||||| | |||||||||||| || | || | ||| || ||
Sbjct 1043 AAGCTGAAGCTAAATCTTGGCATCCTC-TCACTTTCACATCTG-ACAATTGCGGACCAGA 1100
Query 969 GGAAATAAAAGAAATAAAGAAAAT-AGACCATGTCTATTACGAGTCTGAATCTCGAACGG 1027
||||||| ||| |||||||||||| | ||||||| ||||| || || || | |||||| |
Sbjct 1101 GGAAATAGAAGGAATAAAGAAAATCA-ACCATGTATATTATGAATCGGAGTATCGAACAG 1159
Query 1028 AATGGTGTA-AGGCGGATTCAAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAGTTCACA 1086
||||||| | || || |||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1160 AATGGTGCAGAG-CGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACT 1218
Query 1087 A-ATGAAGCTGCTATGCG-CATTGTGAGTGAAGGACTAATAGGATCATCAACA-A-ACA- 1141
| | || || || ||||| | || ||||||||||| |||||| ||| || | | | |||
Sbjct 1219 AGAGGA-GCCGCAATGCGTCTTT-TGAGTGAAGGATTAATAGAATCCTCTATAGATACAA 1276
Query 1142 CAACCTT 1148
|||||||
Sbjct 1277 CAACCTT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5