BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312224 Length=1152 Score E Sequences producing significant alignments: (Bits) Value AT1G11940.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 1934 0.0 AT1G62305.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 774 0.0 > AT1G11940.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:4031574-4034078 REVERSE LENGTH=1478 Length=1478 Score = 1934 bits (1047), Expect = 0.0 Identities = 1117/1152 (97%), Gaps = 0/1152 (0%) Strand=Plus/Plus Query 1 ATGACGAGGAAATCGCAGCCGCAGATTCAGCCTCCATTGTCACGTCGCGGCGGCGTAGTG 60 ||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||| ||| Sbjct 133 ATGACGAAGAAATCACAGCCGCAGATTCCGCCTCCATTGTCCCGTCGCGGCGGCGTCGTG 192 Query 61 TGGCTAGGATGGAAGCTCGTAATCGCTTTCTCCGTCGCGCTTTGCCTTCTTGCTCTCCTC 120 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 193 TGGCTGGGATGGAAACTCGTAATCGCTTTCTCCGTCGCGCTTTGCCTTCTTGCTCTTCTT 252 Query 121 CGAATCCAACTACAGTACAATTCCGTCACGACATTGCCGTCGCCGCTCTCCGTCGCGAGA 180 |||||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||| Sbjct 253 CGAATCCAACTACAGTACAATTCCTTCACGACATTGTCGTTTCCACTCTCCGTCGCGAGA 312 Query 181 TCTCAGACACCGCTTCACAAATACTCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 313 TCTCAGACACCGCTTCACAAATACTCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTA 372 Query 241 GCTCGCCGTGACCTCCCACTTGATTTTATGTGGGATAGATTCTTCAAGGGTGTGGATCAT 300 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 373 GCTCGCCGTGATCTCCCACTTGATTTTATGTGGGATAGATTCTTCAAGGGAGTGGATCAT 432 Query 301 GCGAATTTCTCAATTTATATACATTCATTACCTGGTTTCGTGTTCAATGAAGACACTACA 360 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 433 GCGAATTTCTCAATTTATATACATTCAGTACCTGGTTTCGTGTTCAATGAAGAAACTACA 492 Query 361 CGATCACAGTATTTCTACAATCGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAA 420 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 493 CGATCACAGTATTTCTATAATCGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAA 552 Query 421 TCAAGCATGATTGCAGCAGAAAGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCCAAT 480 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 553 TCAAGCATGATTGAAGCAGAAAGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCCAAT 612 Query 481 CAAATATTTGTTCTTCTCTCTGACAGATGTGCTCCGTTATATGACTTTGGCTATATATAC 540 |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 613 CAAAGATTTGTTCTTCTCTCTGACAGATGTGCTCCATTATATGACTTTGGCTATATATAC 672 Query 541 AGATATCTTATCTCTTCACCAAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA 600 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 673 AAATATCTTATCTCTTCACCGAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA 732 Query 601 CGGTACAGTGTGAAAATGTCTCCTGTCATACCTGAAGAGAAATGGCGGAAAGGATCCCAG 660 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 733 CGGTACAGTGTGAAAATGTCTCCTGTCATACCTGAAGAGAAATGGCGAAAAGGATCCCAG 792 Query 661 TGGATAGATTTGATCAGAAGTCATGCAGAGGTCATTGTAAATGATGGTATCGTATTCCCA 720 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 793 TGGATAGCTTTGATCAGAAGTCATGCAGAGGTCATTGTAAATGATGGTATCGTATTCCCA 852 Query 721 GTTTTTAAGGAATTCTGCAAGAGATGTCCACCTTTAGGTACCAATGAGGCATGGTTGTTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 GTTTTTAAGGAATTCTGCAAGAGATGTCCACCTTTAGGTACCAATGAGGCATGGTTGTTT 912 Query 781 CTTAAACAGAAACGGCGCAACTGCATCCCCGATGAACACTATGTGCAAACATTGCTTACG 840 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 CTTAAACAGAAGCGACGCAACTGCATCCCCGATGAACACTATGTGCAAACATTGCTTACG 972 Query 841 ATGCAAGGGCTAGAGAGTGAAATGGAACGAAGAACAGTGACATACACTGCATGGAACGTT 900 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 973 ATGCAAGGACTAGAGAGTGAAATGGAACGAAGAACAGTGACATACACTGTATGGAACGTT 1032 Query 901 TCAGGTACAAAATATGAAGCCAAATCTTGGCATCCCGTCACTTTCACATTGGAAAACTCC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 TCAGGTACAAAATATGAAGCCAAATCTTGGCATCCCGTCACTTTCACATTGGAAAACTCC 1092 Query 961 GGTCCTGAGGAAATAAAAGAAATAAAGAAAATAGACCATGTCTATTACGAGTCTGAATCT 1020 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1093 GGCCCTGAGGAAATAAAAGAAATAAAGAAAATAGACCATGTCTATTACGAGTCTGAATCT 1152 Query 1021 CGAACGGAATGGTGTAAGGCGGATTCAAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAG 1080 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1153 CGAACGGAATGGTGTAAGGCGGATTCGAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAG 1212 Query 1081 TTCACAAATGAAGCTGCTATGCGCATTGTGAGTGAAGGACTAATAGGATCATCAACAAAC 1140 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1213 TTCACGAATGAAGCTGCTATGCGCATTGTGAGTGAAGGACTAATAGGATCATCAGCAAAC 1272 Query 1141 ACAACCTTATAA 1152 | |||||||||| Sbjct 1273 AAAACCTTATAA 1284 > AT1G62305.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:23026776-23029339 REVERSE LENGTH=1500 Length=1500 Score = 774 bits (419), Expect = 0.0 Identities = 833/1027 (81%), Gaps = 52/1027 (5%) Strand=Plus/Plus Query 148 ACGACATTGCCGTCGCCGCTCTCCGTCGCGAGATCTCAGACA-CCGCT-TC-ACAAATAC 204 |||||| || | ||| | ||||||||||||||||||| | | || || || |||||| Sbjct 283 ACGACACTGTCTTCGTCTCTCTCCGTCGCGAGATCTC-G-TATCC-CTCTCGTTAAATAC 339 Query 205 TCCGGTGATCGTCCCAAGCTCGCTTTCCTTTTCTTAGCTCGCCGTGACCTCCCACTTGAT 264 ||||| ||||||||||| ||||| ||||||||| | ||||| ||||| | ||||||||| Sbjct 340 TCCGGCGATCGTCCCAAACTCGCCTTCCTTTTCCTCGCTCGACGTGATTTGCCACTTGAT 399 Query 265 TTTATGTGGGATAGATTCTTCAAGGGTGTGGATCATG-CGAATTTCTCAATTTATATACA 323 ||| | ||||| |||||||||||| ||| ||||| | |||||||||||| ||| |||| Sbjct 400 TTTCTCTGGGACAGATTCTTCAAGAGTGCAGATCA-GAGGAATTTCTCAATCTATGTACA 458 Query 324 TTCATTACCTGGTTTCGTGTTCAATGAAGACA-CTACACGATCACAGTAT-TTCTACAAT 381 |||| ||||||||||||| ||| ||||| || | ||| ||||||| | | ||||||||| Sbjct 459 TTCAATACCTGGTTTCGTATTCGATGAA-TCATCCACAAGATCACA-TTTCTTCTACAAT 516 Query 382 CGCCAATTGAACAATAGCATTAAGGTAGTATGGGGAGAATCAAGCATGATTGCAGCAGAA 441 || |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 517 CGTCAATTGAAGAATAGCATTGAGGTAGTTTGGGGAGAATCAAGCATGATTGCAGCAGAA 576 Query 442 AGATTGTTGCTTGCATCTGCTTTAGAGGATCACTCC-AATCAAATATTTGTTCTTCTCTC 500 ||||||||||||||||||||||| || |||| || | ||||||| |||||||||| | || Sbjct 577 AGATTGTTGCTTGCATCTGCTTTGGAAGATC-CTTCTAATCAAAGATTTGTTCTTTTGTC 635 Query 501 TGACAGATGTGCTCCGTTATATGACTTTGGCTATATATACAGATATCTTA-TCTCTTCAC 559 ||| || |||| ||||||||| |||||||| || || ||||||||||| | | ||||||| Sbjct 636 TGATAGCTGTGTTCCGTTATACGACTTTGGTTACATTTACAGATATCT-AGTTTCTTCAC 694 Query 560 CAAGGAGTTTTGTGGATAGTTTTCTTCATACTAAAGAGACA-CGGTACAGTGTGAAAATG 618 ||| ||||||||| || || || ||| ||| || || | | || |||| | |||||||| Sbjct 695 CAAAGAGTTTTGTAGACAGCTTCCTTGATA--AA-GATA-ATCGCTACACTATGAAAATG 750 Query 619 TCTCCTGTCATACCTGAA-GAGAAATGGCGGAAAGGATCCCAGTGGATAG-ATTTGATCA 676 | |||||| |||| ||| || |||||||| |||||||| ||||||||| ||| ||||| Sbjct 751 TTTCCTGTTATACG-GAAAGAAAAATGGCGAAAAGGATCTCAGTGGATATCATT-GATCA 808 Query 677 GAAGTCATGCAGAGGTCATTGTAAATGATGGTA-TCGTATTCCCAGTTTTTAAGGAATTC 735 |||| ||||||||||||||||| ||||||| || | || ||||| |||||| || |||| Sbjct 809 GAAGCCATGCAGAGGTCATTGTTAATGATGATACT-GTGTTCCCTGTTTTTCAGAAATTT 867 Query 736 TGCAAGAGATGTCCACCTTTAGG-TACCA-ATGAGGCAT-GGTTGTTTCTTAAACAGAAA 792 |||||| ||| || |||| | || | ||| | || || || | | ||||||| ||| Sbjct 868 TGCAAGCGATCTCTACCTCT-GGATCCCAGAA-AGA-ATTGGCTATATCTTAAAAAGAGG 924 Query 793 CGGCGCAACTGCATCCCCGATGAACACTATGTGCAAACAT-TGCTTACGATGCAAGGGCT 851 || | |||||| ||||| ||||||||||| |||||||| | | || || |||| || || Sbjct 925 CGACACAACTGTATCCCTGATGAACACTACGTGCAAAC-TCTACTAACAATGCGTGG-CT 982 Query 852 AG-AGAGTGAAATGGAACGAAGAACAGTGACATACACTGCATGGAACGTTTCAGGTACAA 910 | | | |||||||||||| ||||||||||||||||| |||||||| | |||| | || Sbjct 983 TGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACATGGAACCTATCAGCAAAAA 1042 Query 911 AATATGAAGCCAAATCTTGGCATCC-CGTCACTTTCACAT-TGGAAAACTCCGGTCCTGA 968 || |||||| |||||||||||||| | |||||||||||| || | || | ||| || || Sbjct 1043 AAGCTGAAGCTAAATCTTGGCATCCTC-TCACTTTCACATCTG-ACAATTGCGGACCAGA 1100 Query 969 GGAAATAAAAGAAATAAAGAAAAT-AGACCATGTCTATTACGAGTCTGAATCTCGAACGG 1027 ||||||| ||| |||||||||||| | ||||||| ||||| || || || | |||||| | Sbjct 1101 GGAAATAGAAGGAATAAAGAAAATCA-ACCATGTATATTATGAATCGGAGTATCGAACAG 1159 Query 1028 AATGGTGTA-AGGCGGATTCAAAACCCGTCCCATGCTTTCTCTTTGCAAGGAAGTTCACA 1086 ||||||| | || || |||||||||||||||| |||||||| ||||| ||||||||||| Sbjct 1160 AATGGTGCAGAG-CGAATTCAAAACCCGTCCCGTGCTTTCTGTTTGCGAGGAAGTTCACT 1218 Query 1087 A-ATGAAGCTGCTATGCG-CATTGTGAGTGAAGGACTAATAGGATCATCAACA-A-ACA- 1141 | | || || || ||||| | || ||||||||||| |||||| ||| || | | | ||| Sbjct 1219 AGAGGA-GCCGCAATGCGTCTTT-TGAGTGAAGGATTAATAGAATCCTCTATAGATACAA 1276 Query 1142 CAACCTT 1148 ||||||| Sbjct 1277 CAACCTT 1283 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56525813670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5