BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg312231
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12040.1 | Symbols: LRX1 | leucine-rich repeat/extensin 1 | ... 1694 0.0
> AT1G12040.1 | Symbols: LRX1 | leucine-rich repeat/extensin 1
| chr1:4070124-4072567 FORWARD LENGTH=2444
Length=2444
Score = 1694 bits (917), Expect = 0.0
Identities = 1028/1083 (95%), Gaps = 2/1083 (0%)
Strand=Plus/Plus
Query 1 ATGTTGttccctcctctccgttccctctttttcctcaccctcttgctctcctccttttgt 60
||||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||
Sbjct 37 ATGTTGTTCCCTCCTCTTCGTTCCCTCTTTCTCTTCACCCTCTTGCTCTCCTCCGTTTGT 96
Query 61 ttcttACAGATCAAAGCAGATCACGGCGATGAAAGCGACTTAGACAGTCATATCAAAGTA 120
|||||||| ||||||||||| |||| ||||||||||||||| | |||| |||||||||||
Sbjct 97 TTCTTACAAATCAAAGCAGACCACGACGATGAAAGCGACTTGGGCAGTGATATCAAAGTA 156
Query 121 GACAAACGTCTCAAGTTCGAGAACCCGAAGCTACGTCAAGCCTACATTGCTCTCCAATCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 157 GACAAACGTCTCAAGTTCGAGAACCCGAAGCTACGTCAAGCCTACATTGCTCTTCAATCA 216
Query 181 TGGAAACAAGCAATCTTCTCTGATCCTTTCAACTTTACAGCTAATTGGAACGGCTCAGAT 240
|||||| |||||||||| ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 217 TGGAAAAAAGCAATCTTTTCTGATCCTTTCAACTTCACAGCTAATTGGAATGGTTCAGAT 276
Query 241 GTTTGCTCCTACAATGGAATCTATTGTGCTCCTTCACCTTCATACCCGAAAACCCGAGTC 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 277 GTTTGCTCCTACAATGGAATCTATTGTGCTCCTTCTCCTTCATACCCGAAAACCCGAGTC 336
Query 301 GTTGCTGGCATTGACCTCAACCACGCTGACATGGCTGGTTACTTGGCTTCCGAGCTTGGT 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 337 GTTGCTGGCATTGACCTCAACCACGCTGACATGGCCGGTTACTTGGCTTCCGAGCTAGGT 396
Query 361 CTCCTCTCCGATCTCGCTCTATTCCACATTAACTCAAACCGTTTCTGCGGTGAAGTCCCT 420
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 397 CTCCTCTCTGATCTCGCTCTGTTCCACATTAACTCAAACCGTTTCTGCGGTGAAGTCCCT 456
Query 421 CTCACGTTTAACCGCATGAAGCTTCTTTACGAGCTTGATCTTAGTAACAACCGATTCGTC 480
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 457 CTCACGTTTAACCGCATGAAGCTTCTCTACGAGCTTGATCTTAGCAACAACCGATTCGTC 516
Query 481 GGTAAGTTCCCTAAGGTTGTCCTCTCGTTGCCTTCCCTCAAATTCTTGGATCTCCGCTAC 540
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 517 GGTAAGTTCCCTAAGGTTGTCCTCTCTTTGCCTTCCCTTAAATTCTTGGATCTCCGCTAC 576
Query 541 AACGAGTTTGAAGGCAAGATCCCATCAAAGCTCTTCGATAGAGAGCTCGATGCTATATTC 600
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 577 AACGAGTTTGAAGGCAAGATCCCATCAAAGCTCTTCGATAGAGAGCTTGACGCTATATTC 636
Query 601 TTGAACCATAACCGGTTCCGGTTCGGGATTCCCAAGAACATGGGGAATTCCCCTGTTTCC 660
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 637 TTGAACCATAACCGGTTCCGGTTCGGGATTCCCAAAAACATGGGAAATTCCCCTGTTTCT 696
Query 661 GCTCTGGTTCTTGCGGACAATAATCTGGGAGGATGCATACCGGGAAGTATCGGTCAAATG 720
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 697 GCTCTGGTTCTTGCGGACAACAATCTCGGAGGATGCATACCGGGAAGTATCGGTCAAATG 756
Query 721 GGGAAGACACTCAACGAGCTAATCCTCTCCAACGACAACTTAACCGGTTGTTTACCTCCT 780
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 757 GGGAAAACACTCAACGAGCTTATCCTCTCCAACGACAACTTAACCGGTTGTTTACCTCCT 816
Query 781 CAGATCGGAAACCTCAAGAAAGTGACGGTTTTCGACATCAGTTCAAACCGTCTACAAGGT 840
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 817 CAGATCGGAAACCTCAAGAAAGTGACGGTTTTCGACATCACTTCAAACCGTCTACAAGGT 876
Query 841 CCATTACCATCTAGCATCGGAAACATGAAGAGCTTAGAAGAGCTTCACGTGGCTAACAAT 900
|| |||||||||||| | || |||||||||||| ||||||||||||||||||||||||||
Sbjct 877 CCGTTACCATCTAGCGTTGGTAACATGAAGAGCCTAGAAGAGCTTCACGTGGCTAACAAT 936
Query 901 GGCTTCACAGGAGTTATTCCTCCAAGTATCTGCCAGCTTTCTAATCTTGAGAACTTCACT 960
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 937 GCCTTCACAGGAGTTATTCCTCCAAGTATCTGCCAGCTTTCTAACCTTGAGAACTTTACT 996
Query 961 TACTCTTCCAACTTCTTCTCCGGTCGTCCTCCTGTGTGCGCAGCTAGTTCGTTGGCCGAT 1020
||||||||||||| ||||||||||||||||||| | ||||||||||||| ||| |||||
Sbjct 997 TACTCTTCCAACTACTTCTCCGGTCGTCCTCCTATATGCGCAGCTAGTTTGTTAGCCGAC 1056
Query 1021 GCTGTGGTGAACGGTACCATGAACTGTC-TAACCGGTTTGGCTCGTCAAAGATCGGCTAA 1079
|||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||
Sbjct 1057 ATTGTGGTGAACGGTACCATGAACTG-CATCACCGGTTTGGCTCGTCAAAGATCGGATAA 1115
Query 1080 ACA 1082
|||
Sbjct 1116 ACA 1118
Score = 632 bits (342), Expect = 3e-180
Identities = 494/564 (88%), Gaps = 24/564 (4%)
Strand=Plus/Plus
Query 1168 ACACAAAGCCCGCCACCACCATCACCGGTATACTATCCACCAGTAACACAA-AGCCCTCC 1226
||||||||||| ||||||||||| || |||||||| ||||| || ||| || || || ||
Sbjct 1726 ACACAAAGCCCTCCACCACCATCGCCAGTATACTACCCACCGGTGACA-AACAGTCCACC 1784
Query 1227 ACCACCATCGCCAGTATACTA-CCCACCGGTGACAAACAGTCCACCACCACAATCACCGG 1285
||||||||| || |||||||| ||| || || ||| ||||||||||||||| |||||| |
Sbjct 1785 ACCACCATCACCGGTATACTATCCC-CCAGTAACATACAGTCCACCACCACCATCACCAG 1843
Query 1286 TATACTATCCGCC-AGAAACATAC-AGTCCACCACCACCGTCACCGGTTTACTATCCGTG 1343
| |||||||| || || |||| | ||||| |||||||| || ||| | ||||||||
Sbjct 1844 TTTACTATCC-CCAAGTAACA-CCAAGTCCTCCACCACCATCGCCGCTATACTATCCCCC 1901
Query 1344 GGAAACACCAAGTCCTCCACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGTCC 1403
| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1902 AGTAACACCAAGTCCACCACCACCATCACCAGTTTACTATCCCCCAGTAACACCAAGTCC 1961
Query 1404 TCCACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGCCCTCCACCACCATCACC 1463
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1962 TCCACCACCATCACCAGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCACC 2021
Query 1464 GGTATATTATCCATCGGAAACACCAAGTCCTCCACCACCCACTGAGTACTATTATTCACC 1523
|| || |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 2022 AGTTTACTATCCATCGGAAACACAAAGTCCTCCACCACCTACTGAGTACTACTATTCACC 2081
Query 1524 AAGCCAGTCTCCGCCACCAACAAAACCATGTAACGAAGGCCATCCACCACAAGCAACACC 1583
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2082 AAGCCAGTCTCCGCCACCAACAAAAGCATGTAAAGAAGGCCATCCACCACAAGCAACACC 2141
Query 1584 AAGTTACGAACCAACTCCTGAATATACATACTCATCATCACCACCACCATCTCCTCCGTC 1643
||||||||||||| |||| |||||| ||||||||||||||||||||||| | | || ||
Sbjct 2142 AAGTTACGAACCACCTCCAGAATATTCATACTCATCATCACCACCACCA-C-CATC--TC 2197
Query 1644 CTAC-TC-TGACTCGTTTGTTCCACCGATTCCAAGTGTCTCATATGATGCATctcctcct 1701
|||| || | ||| || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 2198 CTACGTCCT-ACT--TT----CCACCGATGCCAAGCGTCTCATATGATGCATCTCCTCCT 2250
Query 1702 cctcctcctccGTCTTACTACTAG 1725
|||||||| |||||||||||||
Sbjct 2251 CCTCCTCC---GTCTTACTACTAG 2271
Score = 481 bits (260), Expect = 1e-134
Identities = 311/336 (93%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 1168 ACACAAAGCCCGCCACCACCATCACCGGTATACTATCCACCAGTAACACAAAGCCCTCCA 1227
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 ACACAAAGCCCTCCACCACCATCACCGGTATACTATCCACCAGTAACACAAAGCCCTCCA 1740
Query 1228 CCACCATCGCCAGTATACTACCCACCGGTGACAAACAGTCCACCACCACAATCACCGGTA 1287
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1741 CCACCATCGCCAGTATACTACCCACCGGTGACAAACAGTCCACCACCACCATCACCGGTA 1800
Query 1288 TACTATCCGCCAGAAACATACAGTCCACCACCACCGTCACCGGTTTACTATCCGTGGGAA 1347
|||||||| |||| ||||||||||||||||||||| ||||| ||||||||||| | |
Sbjct 1801 TACTATCCCCCAGTAACATACAGTCCACCACCACCATCACCAGTTTACTATCCCCAAGTA 1860
Query 1348 ACACCAAGTCCTCCACCACCATCACCCGTT-TACTATCCCCCAGTAACACCAAGTCCTCC 1406
||||||||||||||||||||||| || | | |||||||||||||||||||||||||| ||
Sbjct 1861 ACACCAAGTCCTCCACCACCATCGCC-GCTATACTATCCCCCAGTAACACCAAGTCCACC 1919
Query 1407 ACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGCCCTCCACCACCATCACCGGT 1466
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1920 ACCACCATCACCAGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCACCAGT 1979
Query 1467 ATATTATCCATCGGAAACACCAAGTCCTCCACCACC 1502
|| ||||| | | |||||||||||||||||||||
Sbjct 1980 TTACTATCCCCCAGTAACACCAAGTCCTCCACCACC 2015
Score = 298 bits (161), Expect = 1e-79
Identities = 242/281 (86%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 1180 CCACCACCATCACCGGTATACTATCCACCAGTAACACAAAGCCCTCCACCACCATCGCCA 1239
|||||||||||||||||||||||||| ||||||||| | || || ||||||||||| |||
Sbjct 1783 CCACCACCATCACCGGTATACTATCCCCCAGTAACATACAGTCCACCACCACCATCACCA 1842
Query 1240 GTATACTA-CCCACCGGTGACAAAC-AGTCCACCACCACAATCACCGGTATACTATCCGC 1297
|| ||||| ||| | || || | | ||||| ||||||| ||| ||| |||||||||| |
Sbjct 1843 GTTTACTATCCC-CAAGTAAC-ACCAAGTCCTCCACCACCATCGCCGCTATACTATCCCC 1900
Query 1298 CAGAAACATAC-AGTCCACCACCACCGTCACCGGTTTACTATCCGTGGGAAACACCAAGT 1356
||| |||| | |||||||||||||| ||||| ||||||||||| | ||||||||||
Sbjct 1901 CAGTAACA-CCAAGTCCACCACCACCATCACCAGTTTACTATCCCCCAGTAACACCAAGT 1959
Query 1357 CCTCCACCACCATCACCCGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCA 1416
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 CCTCCACCACCATCACCAGTTTACTATCCCCCAGTAACACCAAGTCCTCCACCACCATCA 2019
Query 1417 CCCGTTTACTATCCCCCAGTAACACCAAGCCCTCCACCACC 1457
|| ||||||||||| | | ||||| ||| |||||||||||
Sbjct 2020 CCAGTTTACTATCCATCGGAAACACAAAGTCCTCCACCACC 2060
Score = 110 bits (59), Expect = 6e-23
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1083 TTTGGATGTTACAACATCTTCTCTCCACCACCACCAACGTTCAAGATGTCACCTGAGGAC 1142
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
Sbjct 1159 TTTGGATGTTACAACATCTTCTCTCCACCACCACCGACGTTTAAGATGTCACCTGAAGTC 1218
Query 1143 CGGAAACTTCCTCC 1156
|||| |||||||||
Sbjct 1219 CGGACACTTCCTCC 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85290725955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5